View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6914_low_57 (Length: 241)

Name: NF6914_low_57
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6914_low_57
NF6914_low_57
[»] chr5 (2 HSPs)
chr5 (1-234)||(7817156-7817389)
chr5 (33-124)||(23945052-23945143)
[»] chr2 (4 HSPs)
chr2 (21-232)||(40328219-40328430)
chr2 (21-232)||(35135114-35135325)
chr2 (33-130)||(177552-177649)
chr2 (30-232)||(3778943-3779145)
[»] scaffold0036 (1 HSPs)
scaffold0036 (21-234)||(75949-76161)
[»] chr8 (2 HSPs)
chr8 (3-229)||(14759948-14760174)
chr8 (3-229)||(26973479-26973705)
[»] chr3 (5 HSPs)
chr3 (1-234)||(26432588-26432821)
chr3 (23-124)||(53608303-53608404)
chr3 (16-127)||(15473446-15473557)
chr3 (23-92)||(17718393-17718462)
chr3 (23-92)||(19019622-19019691)
[»] chr6 (2 HSPs)
chr6 (23-130)||(27852952-27853059)
chr6 (24-130)||(24990663-24990769)
[»] chr4 (2 HSPs)
chr4 (33-232)||(54477303-54477501)
chr4 (55-127)||(46784475-46784547)
[»] chr1 (1 HSPs)
chr1 (21-112)||(50236580-50236671)
[»] chr7 (1 HSPs)
chr7 (3-76)||(16770016-16770089)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 7817156 - 7817389
Alignment:
Q  1 attgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctcc 100  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  7817156 attgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctcagacagggtgaccctttatctcc 7817255  T
Q  101 ataccttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatccgatccaaatcataaatacggggcct 200  Q
     |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||| | |||| ||||||||||||||||| ||||| |||||||    
T  7817256 ttaccttttcattctttgcatggaaaagctatatgttgctattagtgccgccgtcaatcaaaggagatgggatccgatccaaatcacaaatagggggcct 7817355  T
Q  201 cagatatctcacttactttttgcagatgatgtcc 234  Q
    | |||||||||  || |||||| |||||||||||    
T  7817356 cggatatctcatctattttttgtagatgatgtcc 7817389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 23945052 - 23945143
Alignment:
Q  33 tggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgcatgga 124  Q
    |||||||| |||||| ||||| ||||||||||| | || ||||| ||| ||||||||||| |||| ||||| || || ||| |||| |||||    
T  23945052 tggaatggaaacaaaattcctcctttcaagccttcacacggtctcagacagggtgatcctctatcaccatatctctttattctttgtatgga 23945143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 40328219 - 40328430
Alignment:
Q  21 tactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgca 120  Q
    ||||| |||||||||||||| ||||| ||| || ||||||||||||||||||| ||  |  | ||||| || || ||||| || ||||||||  | || |    
T  40328219 tactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggacttcgtcaaggtgacccgttgtctccttatcttttcatcctatgta 40328318  T
Q  121 tggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatccgatccaaatcataaatacggggcctcagatatctcacttactttt 220  Q
    ||||||| || | |||||| || | | |||| ||||||||||| |||| ||| ||||| ||||||| |||||||||| |  || |||||||| |||| ||    
T  40328319 tggaaaaactctctgttgcaatcaattccgctgtcaaccaagggagatgggaaccgatacaaatcacaaatacgggggccaaggtatctcacctactctt 40328418  T
Q  221 tgcagatgatgt 232  Q
    ||||||||||||    
T  40328419 tgcagatgatgt 40328430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 35135325 - 35135114
Alignment:
Q  21 tactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgca 120  Q
    ||||| |||||||||||||| ||||| ||  || ||||||||||||||||||| ||  |  | ||||| || || ||||| || ||||||||  | || |    
T  35135325 tactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgttgtctccttatcttttcatcctatgta 35135226  T
Q  121 tggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatccgatccaaatcataaatacggggcctcagatatctcacttactttt 220  Q
    ||||||| || | |||||| || | | |||| ||||||||||| |||| ||| ||||| ||||||| |||||||||| |  || |||||||| |||| ||    
T  35135225 tggaaaaactctctgttgcaatcaattccgctgtcaaccaagggagatgggaaccgatacaaatcacaaatacgggggccaaggtatctcacctactctt 35135126  T
Q  221 tgcagatgatgt 232  Q
    ||||||||||||    
T  35135125 tgcagatgatgt 35135114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 177552 - 177649
Alignment:
Q  33 tggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgcatggaaaagct 130  Q
    |||||||| ||||||   ||| || ||||||||||||||||||||||| | ||||| ||||| ||||| ||||| ||||| || ||||||||||||||    
T  177552 tggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaaggtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 3779145 - 3778943
Alignment:
Q  30 ttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgcatggaaaagc 129  Q
    ||||||||||| ||||| ||  || ||||||||||||||||||| ||  |  | ||||| ||  | ||||| || ||||||||  | || |||||||| |    
T  3779145 ttatggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaaac 3779046  T
Q  130 tatttgttgccattagtgccgccgtcaaccaaggaagataggatccgatccaaatcataaatacggggcctcagatatctcacttactttttgcagatga 229  Q
    | | |||||| || | | |||| ||||| ||||| |||| ||| || || ||||||| |||||||||| |  || ||||||| ||||| |||||||||||    
T  3779045 tctctgttgcaatcaattccgctgtcaatcaagggagatgggaaccaatacaaatcacaaatacgggggccaaggtatctcatttactctttgcagatga 3778946  T
Q  230 tgt 232  Q
    |||    
T  3778945 tgt 3778943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 75949 - 76161
Alignment:
Q  21 tactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgca 120  Q
    ||||| |||||||||||||| ||||| || ||||| |||||||||||||||||||| ||| | ||||| |  || || || || ||||||||  ||||||    
T  75949 tactcaattttatggaatgg-aacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgca 76047  T
Q  121 tggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatccgatccaaatcataaatacggggcctcagatatctcacttactttt 220  Q
    |||||||||| | |||||| || | |  |||  |||||||||| | || |||   ||||||||||| ||||| |||||| ||| |||||||| |  | ||    
T  76048 tggaaaagctctctgttgctatcaatctcgctatcaaccaagggacatgggaagtgatccaaatcacaaatagggggccccaggtatctcacctcttctt 76147  T
Q  221 tgcagatgatgtcc 234  Q
    ||||||||||||||    
T  76148 tgcagatgatgtcc 76161  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 14759948 - 14760174
Alignment:
Q  3 tgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccat 102  Q
    ||||| ||||| ||||| ||||| || ||||||||||| |||||||| ||||  ||||| || || | ||| ||  |  | || ||||| || || ||||    
T  14759948 tgtgtttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggccttcgccaaggagatccgttgtccccat 14760047  T
Q  103 accttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatccgatccaaatcataaatacggggcctca 202  Q
    |||| |||||| |||| ||||||||||| | | |||| || | | | || ||||| |||||||| | ||| ||| | ||||||| |||||||||||| ||    
T  14760048 acctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgggaaccggttcaaatcacaaatacggggcccca 14760147  T
Q  203 gatatctcacttactttttgcagatga 229  Q
    |||||||||| |||| |||||||||||    
T  14760148 gatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 26973479 - 26973705
Alignment:
Q  3 tgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccat 102  Q
    ||||| ||||| ||||| ||||| || ||||||||||| |||||||||||||  ||||| || || | ||| ||  |  | || ||||| || || ||||    
T  26973479 tgtgtttcttcatccaactactccatcttatggaatggaaacaaacttccttacttcaaacccacacgtggccttcgccaaggagatccgttgtcaccat 26973578  T
Q  103 accttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatccgatccaaatcataaatacggggcctca 202  Q
    |||| |||||| |||| ||||||||||| | | |||| || | | | || ||||| |||||||| | ||| ||| | ||||||| |||||||||||| ||    
T  26973579 acctcttcattctttgtatggaaaagctctctattgctataaattcagctgtcaatcaaggaagttgggaaccggttcaaatcacaaatacggggcccca 26973678  T
Q  203 gatatctcacttactttttgcagatga 229  Q
     ||||||||| |||| ||||| |||||    
T  26973679 aatatctcacctactatttgccgatga 26973705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 26432821 - 26432588
Alignment:
Q  1 attgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctcc 100  Q
    ||||||| ||||| || || ||||||||  | ||||||||||||||  | || |||||||| ||| ||||||||||  || | |||||||| || || ||    
T  26432821 attgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtctccgacaaggtgatccattgtcccc 26432722  T
Q  101 ataccttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatccgatccaaatcataaatacggggcct 200  Q
     || || ||||| |||||||||||||||||||  | ||| || |   ||||||||| ||||||||||| ||| ||||| |||||||    |||||||||     
T  26432721 ttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaaccgattcaaatcactcctacggggccg 26432622  T
Q  201 cagatatctcacttactttttgcagatgatgtcc 234  Q
    ||  |||| ||| | ||||||||| |||||||||    
T  26432621 catttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 53608404 - 53608303
Alignment:
Q  23 ctctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgcatg 122  Q
    ||||||| | |||||||| |||||| | |||||||||| |||| | |||||||| ||| ||||||||||| |||| |||||||| || ||| |||| |||    
T  53608404 ctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtctcagacagggtgatcctctatccccatacctctttattctttgtatg 53608305  T
Q  123 ga 124  Q
    ||    
T  53608304 ga 53608303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 15473557 - 15473446
Alignment:
Q  16 ccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattat 115  Q
    ||||||||||| | ||||||||||| |||||| | ||| |||||||||| |||||||| ||  || | ||||| ||  | ||||||||||  |||||  |    
T  15473557 ccaattactctctcttatggaatggaaacaaaatgcctcctttcaagcccactcatggcctccgacaaggtgacccactttctccataccaattcatact 15473458  T
Q  116 ttgcatggaaaa 127  Q
    ||||||||||||    
T  15473457 ttgcatggaaaa 15473446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 17718462 - 17718393
Alignment:
Q  23 ctctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcct 92  Q
    ||||||||| |||||||| |||||| | ||| | ||||||||| ||||||||||  || |||||||||||    
T  17718462 ctctattttgtggaatggaaacaaaatgcctcccttcaagccttctcatggtctctgacagggtgatcct 17718393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 19019691 - 19019622
Alignment:
Q  23 ctctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcct 92  Q
    ||||||||| |||||||| |||||| | ||| | ||||||||| ||||||||||  || |||||||||||    
T  19019691 ctctattttgtggaatggaaacaaaatgcctcccttcaagccttctcatggtctctgacagggtgatcct 19019622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 27853059 - 27852952
Alignment:
Q  23 ctctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgcatg 122  Q
    ||||||| | ||||| || |||||| | ||||||||||||||| |||||||||||||| | || || ||||||||||| ||| | |||||  |||| |||    
T  27853059 ctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttattcatcctttgtatg 27852960  T
Q  123 gaaaagct 130  Q
    ||||||||    
T  27852959 gaaaagct 27852952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 24990769 - 24990663
Alignment:
Q  24 tctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgcatgg 123  Q
    |||||||||||||| || |||||| | ||  |||||||||| || |||||||| ||| | ||||| ||  | ||||| || ||||||||| |||||||||    
T  24990769 tctattttatggaacggtaacaaaatgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatgg 24990670  T
Q  124 aaaagct 130  Q
    | |||||    
T  24990669 agaagct 24990663  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 54477501 - 54477303
Alignment:
Q  33 tggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgcatggaaaagctat 132  Q
    |||||||| ||||| ||||| |||||||||||||| ||||||||  |  | ||||||||||| || || || || |||||| ||||||||||||| || |    
T  54477501 tggaatggaaacaagcttccatctttcaagcctacacatggtctgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaatctct 54477402  T
Q  133 ttgttgccattagtgccgccgtcaaccaaggaagataggatccgatccaaatcataaatacggggcctcagatatctcacttactttttgcagatgatgt 232  Q
     | |||| || | | | | |||||| ||||| |  | ||| || |||||||||| ||||| |||||| || ||||||||| | || ||||||||||||||    
T  54477401 ctattgctatcaattcagtcgtcaatcaagggaattgggaaccaatccaaatcacaaata-ggggccccaaatatctcacctcctctttgcagatgatgt 54477303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 46784547 - 46784475
Alignment:
Q  55 ctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgcatggaaaa 127  Q
    ||||||| ||||||||||| || ||| | ||||||||| ||||||| ||||| |||||  |||||||| ||||    
T  46784547 ctttcaaacctactcatggccttagacaaggtgatcctctatctccctacctcttcatcctttgcatgaaaaa 46784475  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 50236671 - 50236580
Alignment:
Q  21 tactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcat 112  Q
    |||||||| |||||||| ||||||||  | ||  ||||||||||||||||||| || ||||| ||||||||  | || || |||||||||||    
T  50236671 tactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggcctcagataaggtgatccgctttccccttaccttttcat 50236580  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 16770089 - 16770016
Alignment:
Q  3 tgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtct 76  Q
    ||||| ||||| |||| || |||||||||||||||||| |||||| | ||   |||||| ||||||||||||||    
T  16770089 tgtgtttcttcttccactttctctattttatggaatggtaacaaattgccgcatttcaaacctactcatggtct 16770016  T

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