View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_59 (Length: 239)
Name: NF6914_low_59
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_59 |
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| [»] scaffold0999 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 13153811 - 13153917
Alignment:
| Q |
1 |
catgtcctctcttcatgcagtaagatcaaactacatcttctatatattcaataccttttagtttcttctttcttacaccataaatcataaatgttatttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
13153811 |
catgtcctctcttcatgcagtaagatcaaactacatcttctatatattcaataccttttagtttcttctttcttacaccataaatcatagatgtaatttt |
13153910 |
T |
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| Q |
101 |
gattctt |
107 |
Q |
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||||||| |
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| T |
13153911 |
gattctt |
13153917 |
T |
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Target: scaffold0999 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0999
Description:
Target: scaffold0999; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 3074 - 3180
Alignment:
| Q |
1 |
catgtcctctcttcatgcagtaagatcaaactacatcttctatatattcaataccttttagtttcttctttcttacaccataaatcataaatgttatttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
3074 |
catgtcctctcttcatgcagtaagatcaaactacatcttctatatattcaataacttttagtatcttctttcttacaccataaatcatagatgtaatttt |
3173 |
T |
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| Q |
101 |
gattctt |
107 |
Q |
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||||||| |
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| T |
3174 |
gattctt |
3180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 3762228 - 3762163
Alignment:
| Q |
159 |
gggaggtgtgatgggg--taagaaggtttgttgggtaaagtggttgacggtatgcctacttcgatc |
222 |
Q |
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| T |
3762228 |
gggaggtgtgatggggggtaagaaggtttgttgggtaaagtggtcgacggtatgcctacctcgatc |
3762163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 11474492 - 11474405
Alignment:
| Q |
34 |
catcttctatatattcaataccttttagtttcttctttcttacaccataaatcataaatgttattttgattctttctataccattaga |
121 |
Q |
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|||||||| |||| |||||||||||||||| || | |||||||||||||||||| |||| ||||| | |||||||| ||||||| |
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| T |
11474492 |
catcttctgtatacccaataccttttagtttgctcatacttacaccataaatcatagatgtcatttttcatttttctatatcattaga |
11474405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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