View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_6 (Length: 598)
Name: NF6914_low_6
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Complemental strand, 4179271 - 4178690
Alignment:
| Q |
1 |
agaaatcgatgatgattctaagaacgatgaacaaaaggttccactcctgcggaatgcggaggttccagaagcagagaggagcctgatacagaaagctata |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4179271 |
agaaatcgatgatgattctaagaacgatgaacaaaaggttccactcctgcggaatgcggaggttccagaagcagagaggagcctggtacagaaagctata |
4179172 |
T |
|
| Q |
101 |
agttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaacttttgtcaccaatttttacaaatgttggca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179171 |
agttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaacttttgtcaccaatttttacaaatgttggca |
4179072 |
T |
|
| Q |
201 |
actgtgactctgtcagcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaa |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179071 |
actgtgactctgtctgcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaa |
4178972 |
T |
|
| Q |
301 |
ggggaatatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaag |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178971 |
ggggaatatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaag |
4178872 |
T |
|
| Q |
401 |
tttatagatttcatgcatgcaatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaa |
500 |
Q |
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| T |
4178871 |
tttatagatttcatgcatgcgatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaa |
4178772 |
T |
|
| Q |
501 |
aagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttgcatttcctactga |
582 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178771 |
aagagatacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttgcatttcctactga |
4178690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 579
Target Start/End: Complemental strand, 4168339 - 4167766
Alignment:
| Q |
9 |
atgatgattctaagaac---gatgaacaaaaggttccactcctgcggaatgcggaggttccagaagcagagaggagcctgatacagaaagctataagttc |
105 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||| |||| ||||| ||||||||||||||| |||| | | ||||||| | ||||||||||| |
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| T |
4168339 |
atgatgattctaagaacaaggatgaacacaaggttccactactgctaaatgcagaggttccagaagcaaagagaaacttgatacaaacagctataagttt |
4168240 |
T |
|
| Q |
106 |
gacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaacttttgtcaccaatttttacaaatgttggcaactgt |
205 |
Q |
| |
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||||||||| |||||||| ||||| |||||||||||||||||||||||||| || || || |||||||| |||||||| ||||||||| |||||| |||| |
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| T |
4168239 |
gacatttcagagcacggcacatttagcaaaccttctacctacaggcactgtccttgcattacaacttttatcaccaatctttacaaatattggcagctgt |
4168140 |
T |
|
| Q |
206 |
gactctgtcagcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaagggga |
305 |
Q |
| |
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|||||||||||||||| |||||| ||| |||||||||||| ||||||||||||||||| ||||||| |||||| |||||| | |||||||||||||| | |
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| T |
4168139 |
gactctgtcagcaagtggatgactgctgcacttgtgactctctgtggtgcatcatgctttctgctaagctttactgatagctttagagacagcaagggta |
4168040 |
T |
|
| Q |
306 |
atatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttat |
405 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |
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| T |
4168039 |
atattatttatgggtttgccacctttaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgctaaataccgcatacggtttat |
4167940 |
T |
|
| Q |
406 |
agatttcatgcatgcaatgatgtcaattctggtgtttgcagcaattgcattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaaaagag |
505 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4167939 |
agattttatgcatgcagtaatgtcaattctggtgtttgcagcaattgcattgtttgatcggaatgtggtgaattgcttttttccagaaccatcaaaagag |
4167840 |
T |
|
| Q |
506 |
atacaagaaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttgcatttcctac |
579 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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|
| T |
4167839 |
atacaagaaatcctcacggcgttgcctgtggcaattggcgatttttgcagcatgcttttcgttacatttcctac |
4167766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 245 - 580
Target Start/End: Original strand, 34944370 - 34944705
Alignment:
| Q |
245 |
ctatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtggg |
344 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||| || |||||| | | ||||| || ||||| || |||||||| |||||||| || || ||||| ||| |
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| T |
34944370 |
ctatgtggtgcctcatgcttcctactatgcttcactgatagcttcaaagacaataaagggaacatatgttatggatttgccacatttaaaggcttatgga |
34944469 |
T |
|
| Q |
345 |
ttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgc |
444 |
Q |
| |
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| T |
34944470 |
tcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggttcattgatttcatgcatgcaattatgtcaattttggttttttc |
34944569 |
T |
|
| Q |
445 |
agcaattgcattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggc |
544 |
Q |
| |
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||| |||||| |||||||||| |||||||| || || || |||||| ||| ||| | ||||| | ||||||| || || |||||||| | |||||| |
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| T |
34944570 |
agctattgcaatgtttgatcataatgtggttaactgtttctttccatcaccttcatatgagatgcgtcaaatccttactgcattgcctgttggaattggt |
34944669 |
T |
|
| Q |
545 |
gttttttgcagcatgcttttcgttgcatttcctact |
580 |
Q |
| |
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||||| || |||||||| || ||||||||||||||| |
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| T |
34944670 |
gttttctgtagcatgctgtttgttgcatttcctact |
34944705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 423
Target Start/End: Original strand, 34947771 - 34947880
Alignment:
| Q |
314 |
tatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttca |
413 |
Q |
| |
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||||| |||||||| || || ||||| ||| | |||||||||||| | | |||||||| | || ||| ||||||||||| ||| ||| || ||||||| |
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| T |
34947771 |
tatggatttgccacatttaaaggcttatggatcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggttgattgatttca |
34947870 |
T |
|
| Q |
414 |
tgcatgcaat |
423 |
Q |
| |
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|||||||||| |
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|
| T |
34947871 |
tgcatgcaat |
34947880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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