View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6914_low_60 (Length: 236)

Name: NF6914_low_60
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6914_low_60
NF6914_low_60
[»] scaffold0031 (1 HSPs)
scaffold0031 (16-222)||(106021-106227)
[»] chr2 (3 HSPs)
chr2 (18-223)||(6944428-6944633)
chr2 (20-222)||(32455013-32455214)
chr2 (77-221)||(36133323-36133467)
[»] chr6 (6 HSPs)
chr6 (16-180)||(35122145-35122309)
chr6 (16-180)||(33344580-33344744)
chr6 (25-222)||(13419530-13419733)
chr6 (99-223)||(2804979-2805104)
chr6 (171-223)||(33345033-33345085)
chr6 (171-223)||(35121813-35121865)
[»] chr7 (4 HSPs)
chr7 (18-213)||(1273868-1274063)
chr7 (21-208)||(34422809-34422996)
chr7 (16-89)||(15582070-15582143)
chr7 (74-127)||(8062243-8062296)
[»] chr1 (5 HSPs)
chr1 (18-212)||(44559763-44559956)
chr1 (18-223)||(35388926-35389131)
chr1 (36-124)||(27086385-27086472)
chr1 (18-204)||(9127161-9127347)
chr1 (97-177)||(38889713-38889792)
[»] chr5 (3 HSPs)
chr5 (18-223)||(35148108-35148313)
chr5 (97-193)||(12041663-12041759)
chr5 (101-223)||(25822333-25822455)
[»] chr3 (3 HSPs)
chr3 (18-222)||(13881278-13881482)
chr3 (22-120)||(24183609-24183707)
chr3 (91-177)||(29826251-29826336)
[»] scaffold0007 (1 HSPs)
scaffold0007 (20-223)||(243618-243821)
[»] chr8 (4 HSPs)
chr8 (50-223)||(34215592-34215771)
chr8 (48-146)||(27490608-27490706)
chr8 (18-76)||(40038620-40038678)
chr8 (145-193)||(23762015-23762063)
[»] chr4 (6 HSPs)
chr4 (24-187)||(6102624-6102780)
chr4 (40-179)||(51599582-51599721)
chr4 (95-161)||(41748939-41749005)
chr4 (145-207)||(38261214-38261276)
chr4 (21-124)||(38261102-38261206)
chr4 (102-153)||(3975995-3976046)


Alignment Details
Target: scaffold0031 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 106227 - 106021
Alignment:
Q  16 catcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatatt 115  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||| |    
T  106227 catcattattagagaatccagctatccaatttcccttgttatcactaagtaaacctctagaaccaatatcaccagaagcaccacaacttccatcaatact 106128  T
Q  116 caacttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggtcggtacac 215  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||||||||||||||||    
T  106127 caacttaacacatccatctgaaggtggggtccaattaaccatgtgacgattaatgtggtgctcaaaagagtgaatattaatagaagttaggtcggtacac 106028  T
Q  216 atgatgt 222  Q
    || ||||    
T  106027 ataatgt 106021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 6944633 - 6944428
Alignment:
Q  18 tcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattca 117  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  6944633 tcattagaagagaatccagccatccaatttcccttgttatcatgaagtaaacctccagaaccaatgtcaccagaagcaccacaacttccaacaatattca 6944534  T
Q  118 acttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggtcggtacacat 217  Q
    ||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| || ||||    
T  6944533 acttaacacatccatctagtggtggggtccatttaaccatgtgacaattaatgtggtgctcagaggagtgaatattaacagaagttaggtcgatatacat 6944434  T
Q  218 gatgtc 223  Q
     |||||    
T  6944433 aatgtc 6944428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 32455013 - 32455214
Alignment:
Q  20 attagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattcaac 119  Q
    |||||||||||| |||||||| ||||  |||||||| ||||||| |||||| ||| ||||||| || | | | |||||||||||||||||||||||||||    
T  32455013 attagaagagaaaccagctattcaatcgcccttgttgtcacgaagtaaaccgccataaccaatgtcccta-aggcaccacaacttccatcaatattcaac 32455111  T
Q  120 ttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggtcggtacacatga 219  Q
    ||||||| ||||||| |||| ||||| || ||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  32455112 ttaacacttccatcttgaggcggggttcacttaacaatgttacgattaatgtggtgctcagaggagtgaatattaacagaagttaggtcagtacacatga 32455211  T
Q  220 tgt 222  Q
    |||    
T  32455212 tgt 32455214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 36133323 - 36133467
Alignment:
Q  77 accaatatcaccataagcaccacaacttccatcaatattcaacttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgc 176  Q
    |||||| |||| | || ||| |||||||  ||||| |||||||||||||||||||||| || |  ||||||| | ||| ||||||| | |||| ||||||    
T  36133323 accaatgtcactacaatcacaacaacttatatcaaaattcaacttaacacatccatcttgatgaagggtccactcaacaatgtgacaaataatatggtgc 36133422  T
Q  177 tcagaggagtgaatattgagagaagttaggtcggtacacatgatg 221  Q
    ||  ||||||||||||  | ||| |||| | | ||||||||||||    
T  36133423 tccaaggagtgaatatcaacagatgttacgccagtacacatgatg 36133467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 35122309 - 35122145
Alignment:
Q  16 catcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatatt 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  35122309 catcattagaagagaatccaactatccaatttcccttgttatcacgaattaaacctccagaaccaatattgccagaagcaccacaacttccatcaatatt 35122210  T
Q  116 caacttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcag 180  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  35122209 caacttaacacatccatctgaaggtggggtccaattaaccatgtgacaattaatgtggtgctcag 35122145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 33344580 - 33344744
Alignment:
Q  16 catcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatatt 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||    
T  33344580 catcattagaagagaatccaactatccaatttcccttgttatcacgaattaaacctccataaccaatatcgccagaagcaccacaacttccatcaatatt 33344679  T
Q  116 caacttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcag 180  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||  ||||||||    
T  33344680 caacttaacacatccatctgaaggtggggtccaattaaccatgtgacaattaatgccgtgctcag 33344744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 13419530 - 13419733
Alignment:
Q  25 aagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccat------aagcaccacaacttccatcaatattcaa 118  Q
    ||||||||||| ||||||||||| |||||||| |||||| |||||||  | ||||||| | |||        |||||||||||||||| |||||||||||    
T  13419530 aagagaatccaactatccaattttccttgttaccacgaagtaaaccttgacaaccaatgttaccgggtccggaagcaccacaacttccgtcaatattcaa 13419629  T
Q  119 cttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggtcggtacacatg 218  Q
    |||||||||||||| | ||||||||||| | ||||||||||||| ||| ||||||||||||||| |||||||||| | | ||| ||||||||||| |||     
T  13419630 cttaacacatccatattgaggtggggtctatttaaccatgtgacaattgatgtggtgctcagagaagtgaatattaataaaagctaggtcggtacgcata 13419729  T
Q  219 atgt 222  Q
    ||||    
T  13419730 atgt 13419733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 2805104 - 2804979
Alignment:
Q  99 caacttccatcaatattcaacttaacacatccatctggaggtgggg--tccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgag 196  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||  |||  | ||| |||||||||||||||||||||||||| ||||||||||| |     
T  2805104 caacttccgtcaatattcaacttaacacatccatcttgaggtggggggtcccct-aacaatgtgacgattaatgtggtgctcagaagagtgaatattaac 2805006  T
Q  197 agaagttaggtcggtacacatgatgtc 223  Q
    | ||||||||||||||| |||||||||    
T  2805005 ataagttaggtcggtacgcatgatgtc 2804979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 33345033 - 33345085
Alignment:
Q  171 tggtgctcagaggagtgaatattgagagaagttaggtcggtacacatgatgtc 223  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||| |||||    
T  33345033 tggtgcttagaggagtgaatattgatagaagttaggtcggtaaacataatgtc 33345085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 35121865 - 35121813
Alignment:
Q  171 tggtgctcagaggagtgaatattgagagaagttaggtcggtacacatgatgtc 223  Q
    |||||||||||| |||||||||| | |||||||||||||||| |||| |||||    
T  35121865 tggtgctcagagtagtgaatatttatagaagttaggtcggtaaacataatgtc 35121813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 1274063 - 1273868
Alignment:
Q  18 tcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattca 117  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  1274063 tcattagaagagattccagctatccaacttcccttgttatcacgaagtaaacctccagaaccaatatcaccgaaagcaccacaactttcatcaatattca 1273964  T
Q  118 acttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggtcggtac 213  Q
    |||||| |||||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||| | | |||||||||||||||    
T  1273963 acttaaaacatccatcttgaggtggggttcatttaaccatgtgacgattaatgtggtgttcagaggagtggatattaacataagttaggtcggtac 1273868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 34422996 - 34422809
Alignment:
Q  21 ttagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattcaact 120  Q
    ||||||||||| ||||||||||||||| |||| |||||||||| |||||||  ||||||||| || ||| |||||||| |||||||||||||||||||||    
T  34422996 ttagaagagaaaccagctatccaattttcctttttatcacgaagtaaacctttagaaccaatgtcgccagaagcaccaaaacttccatcaatattcaact 34422897  T
Q  121 taacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggtc 208  Q
    |||||||||||| |  | ||| |||||| ||||||||||||||||| |||||||| | | ||||||||||||| | ||||||||||||    
T  34422896 taacacatccatattaaagtgtggtccatttaaccatgtgacgattgatgtggtgtttaaaggagtgaatattaaaagaagttaggtc 34422809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 15582143 - 15582070
Alignment:
Q  16 catcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcacca 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  15582143 catcattagaagagaatccagctatccaatttcccttgttatcacgaagtaaacctccaaaaccaatatcacca 15582070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 8062296 - 8062243
Alignment:
Q  74 agaaccaatatcaccataagcaccacaacttccatcaatattcaacttaacaca 127  Q
    ||||| ||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  8062296 agaactaatgtcaccataggcaccacaactttcatcaatattcaacttaacaca 8062243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 44559956 - 44559763
Alignment:
Q  18 tcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattca 117  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||| |||||||| ||||| ||| |||||  ||||||||||| || ||||||||||||    
T  44559956 tcattagaagagaatccagctatcctatttttcttgttatcacgaagtaaacctctagaac-aatgtcaccggaagcaccacaattttcatcaatattca 44559858  T
Q  118 acttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggtcggta 212  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||| |||||| | ||||||||||||||||    
T  44559857 acttaacacatccatctggaggtggggtccatttaaccatgtgataattaatgtggtgctcagaggagttaatattaacagaagttaggtcggta 44559763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 35388926 - 35389131
Alignment:
Q  18 tcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattca 117  Q
    |||||||||||||| |||| ||||||||  |||||||| ||||||| ||||||  |||||||||| |||||| | |||||||||||||||||||||||||    
T  35388926 tcattagaagagaaaccagttatccaatcacccttgttgtcacgaagtaaaccgtcagaaccaatgtcaccagaggcaccacaacttccatcaatattca 35389025  T
Q  118 acttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggtcggtacacat 217  Q
    |||||||||| |||||| ||||| ||||| | |||||  ||| | |||||||||||||| |||| ||| ||||||| | ||||||||||||  ||| |||    
T  35389026 acttaacacacccatcttgaggtagggtctacttaacattgttatgattaatgtggtgcacagaagagagaatattaacagaagttaggtcaatacgcat 35389125  T
Q  218 gatgtc 223  Q
    ||||||    
T  35389126 gatgtc 35389131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 27086472 - 27086385
Alignment:
Q  36 gctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattcaacttaac 124  Q
    |||||||||||||||||| |||||| || ||||| |||| ||||||| |||||  ||| | |||||||||||||||||||||| |||||    
T  27086472 gctatccaatttcccttgctatcacaaaataaac-tccataaccaatgtcaccggaagaatcacaacttccatcaatattcaatttaac 27086385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 9127161 - 9127347
Alignment:
Q  18 tcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattca 117  Q
    |||||| |||||||  || |||||||||   ||||||| ||||||| |||||| ||| ||||| | | | || ||||||||| ||||||||||||||| |    
T  9127161 tcattaaaagagaaatcaactatccaatcgaccttgttgtcacgaaataaaccgccataaccattgttatcaaaagcaccactacttccatcaatattta 9127260  T
Q  118 acttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagtta 204  Q
    || ||| |||||   ||  | |||||||||| ||||| |||| || ||||||||  |||||| | |||  |||||| | ||||||||    
T  9127261 acataagacatcagccttaaagtggggtccagttaacaatgttacaattaatgtcttgctcacatgagcaaatattaacagaagtta 9127347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 38889713 - 38889792
Alignment:
Q  97 cacaacttccatcaatattcaacttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgct 177  Q
    |||||||| |||||||||||||||||||||||  |||| || | || ||||| || || || ||||||||||| |||||||    
T  38889713 cacaactttcatcaatattcaacttaacacatttatcttga-gaggagtccattttacgatatgacgattaatttggtgct 38889792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 35148108 - 35148313
Alignment:
Q  18 tcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattca 117  Q
    ||||||||||| |||||| ||||||||| |||  |||| |||| || |||||| | |||| |||| ||||| ||| ||||||||||||||||||||||||    
T  35148108 tcattagaagaaaatccatctatccaatctcctatgttgtcactaagtaaaccactagaatcaatgtcaccgtaatcaccacaacttccatcaatattca 35148207  T
Q  118 acttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggtcggtacacat 217  Q
    ||||||| ||||||| | ||||||||||| | ||||| |||||||||||| |||||||||| ||||||| |||||| | |||||||||||||||||||||    
T  35148208 acttaacgcatccatattgaggtggggtctatttaacaatgtgacgattagtgtggtgctcggaggagtaaatattaacagaagttaggtcggtacacat 35148307  T
Q  218 gatgtc 223  Q
     |||||    
T  35148308 aatgtc 35148313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 12041759 - 12041663
Alignment:
Q  97 cacaacttccatcaatattcaacttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatatt 193  Q
    ||||||||||||||||||||||||| ||||||||||||  ||||||| |||| ||||| |||| |||||||||||||||||||  |||| |||||||    
T  12041759 cacaacttccatcaatattcaacttcacacatccatcttcaggtgggatccacttaacaatgttacgattaatgtggtgctcaacggagcgaatatt 12041663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 25822333 - 25822455
Alignment:
Q  101 acttccatcaatattcaacttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaa 200  Q
    |||| ||| ||||||||||||||  ||||||||| ||||||| ||||| ||||  ||||||| |||||||||||| | | ||||||||||||| | ||||    
T  25822333 actttcatgaatattcaacttaatgcatccatcttgaggtggagtccacttaataatgtgacaattaatgtggtgtttataggagtgaatattaatagaa 25822432  T
Q  201 gttaggtcggtacacatgatgtc 223  Q
    |||| || ||||  |||||||||    
T  25822433 gttaagttggtatgcatgatgtc 25822455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 13881278 - 13881482
Alignment:
Q  18 tcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattca 117  Q
    |||||||||||||||||| ||||||| |||| |||||| |||| || |||||| ||| ||||||| |||||  |||||||||||||||||||||||||||    
T  13881278 tcattagaagagaatccaactatccactttctcttgttgtcacaaagtaaaccaccaaaaccaatgtcaccggaagcaccacaacttccatcaatattca 13881377  T
Q  118 acttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggtcggtacacat 217  Q
    ||||| ||||||||||| ||||| ||||||   |||| ||||  |||||||||||||||| ||||||||||||||| | |||||||| || |||||||||    
T  13881378 acttagcacatccatcttgaggtagggtccttctaacaatgtttcgattaatgtggtgcttagaggagtgaatattaatagaagttatgtgggtacacat 13881477  T
Q  218 gatgt 222  Q
     ||||    
T  13881478 aatgt 13881482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 24183609 - 24183707
Alignment:
Q  22 tagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattcaact 120  Q
    ||||||||||||| |||||||||| ||| ||||||||||||| |||| ||| | ||||||| | |||   |  || |||||||||||||||||| ||||    
T  24183609 tagaagagaatcctgctatccaatctcctttgttatcacgaattaaatctctaaaaccaatgttaccggtaatactacaacttccatcaatatttaact 24183707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 29826251 - 29826336
Alignment:
Q  91 aagcaccacaacttccatcaatattcaacttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgct 177  Q
    |||||||||||||  ||||||||||||| || || ||||||||| || | |||||||| ||||| |||||| |||||||||| ||||    
T  29826251 aagcaccacaactatcatcaatattcaattttacgcatccatcttgaag-ggggtccacttaacaatgtgaagattaatgtgatgct 29826336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 243821 - 243618
Alignment:
Q  20 attagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattcaac 119  Q
    ||||||||||||  |  ||||||||| ||| ||||| ||| ||| |||||| | |||| |||| || ||  ||| |||||||||||||||||||||||||    
T  243821 attagaagagaagtctactatccaatctcctttgttgtcaagaagtaaaccgctagaaacaatgtcgccggaagtaccacaacttccatcaatattcaac 243722  T
Q  120 ttaacacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggtcggtacacatga 219  Q
    ||||||||||||||| |||| |||||||| ||||| ||||||| |||| ||||||||||||| ||||||||||| | ||||||||||| ||||||||| |    
T  243721 ttaacacatccatcttgaggaggggtccacttaacaatgtgacaattagtgtggtgctcagaagagtgaatattaacagaagttaggttggtacacataa 243622  T
Q  220 tgtc 223  Q
    ||||    
T  243621 tgtc 243618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 34215592 - 34215771
Alignment:
Q  50 cttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattcaacttaacacatccatctggaggtggggt-cca 148  Q
    |||||| | ||||| |||||| ||| || |||| |||||| ||| |||||||||||||||||| ||||||| ||||||||||||| |||||| ||| |||    
T  34215592 cttgttgttacgaagtaaaccgccaaaatcaatgtcaccagaagtaccacaacttccatcaatcttcaactcaacacatccatcttgaggtgtggtccca 34215691  T
Q  149 attaaccatgtgac-----gattaatgtggtgctcagaggagtgaatattgagagaagttaggtcggtacacatgatgtc 223  Q
     ||||| |||||||      |||||||||||||||| | ||||||||||| | |||||||||||| |||||||| |||||    
T  34215692 cttaactatgtgactattaaattaatgtggtgctcataagagtgaatattaacagaagttaggtcagtacacataatgtc 34215771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 27490608 - 27490706
Alignment:
Q  48 cccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattcaacttaacacatccatctggaggtggggtc 146  Q
    |||||||| ||||||| |||||||||||| ||||| |||||| | | ||| |||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  27490608 cccttgttctcacgaagtaaacctccagagccaatgtcaccagaggtaccgcaacttccatcaatattcaacttaacgcatccatcttgaggtgaggtc 27490706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 40038620 - 40038678
Alignment:
Q  18 tcattagaagagaatccagctatccaatttcccttgttatcacgaactaaacctccaga 76  Q
    |||||||||||||| |||||||| ||||  |||||||| ||| ||| ||||||||||||    
T  40038620 tcattagaagagaaaccagctattcaatcgcccttgttgtcatgaagtaaacctccaga 40038678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 23762063 - 23762015
Alignment:
Q  145 tccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatatt 193  Q
    |||| ||||| || |||| |||||||||||||||| |||||||||||||    
T  23762063 tccatttaacaatatgacaattaatgtggtgctcataggagtgaatatt 23762015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 6102780 - 6102624
Alignment:
Q  24 gaagagaatccagctatccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattcaacttaa 123  Q
    ||||||||  ||| |||||||| ||||||||||||||||| |||||  |||||| ||||||| ||| | |||||||||||||||||||||       |||    
T  6102780 gaagagaagtcaggtatccaatctcccttgttatcacgaagtaaactgccagaatcaatatccccagaggcaccacaacttccatcaata-------taa 6102688  T
Q  124 cacatccatctggaggtggggtccaattaaccatgtgacgattaatgtggtgctcagaggagtg 187  Q
      |||| ||||  || | ||||||| |||||  |||||||||||||||||||||||||||||||    
T  6102687 tgcatcgatcttaagatagggtccacttaacattgtgacgattaatgtggtgctcagaggagtg 6102624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 51599582 - 51599721
Alignment:
Q  40 tccaatttcccttgttatcacgaactaaacctccagaaccaatatcaccataagcaccacaacttccatcaatattcaacttaacacatccatctggagg 139  Q
    |||||||| ||||||| ||||||| |||| |  || ||||||| |||||| ||| |||||||||| ||||||| |||||||||   ||||||||| ||||    
T  51599582 tccaattttccttgttgtcacgaaataaatcgtcataaccaatgtcaccaaaagtaccacaactttcatcaatgttcaacttattgcatccatcttgagg 51599681  T
Q  140 tggggtccaattaaccatgtgacgattaatgtggtgctca 179  Q
    ||||||||| ||||| ||||  |  |||||||||||||||    
T  51599682 tggggtccacttaacaatgtagcagttaatgtggtgctca 51599721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 41749005 - 41748939
Alignment:
Q  95 accacaacttccatcaatattcaacttaacacatccatctggaggtggggtccaattaaccatgtga 161  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||| |||||| ||||| ||||||    
T  41749005 accacaacttccatcaatattcaacttaatacatccattttgaggtgtggtccacttaacaatgtga 41748939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 38261214 - 38261276
Alignment:
Q  145 tccaattaaccatgtgacgattaatgtggtgctcagaggagtgaatattgagagaagttaggt 207  Q
    |||| ||||| |||||||||||||||||||||||| || |||||||||| | | |||||||||    
T  38261214 tccatttaacaatgtgacgattaatgtggtgctcaaagaagtgaatattaacaaaagttaggt 38261276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 38261102 - 38261206
Alignment:
Q  21 ttagaagagaatccagctatccaatttcccttgttatcacgaactaaacctcca-gaaccaatatcaccataagcaccacaacttccatcaatattcaac 119  Q
    ||||||||||||||||| || |||||| | ||||| ||||||| |||||| |||  || |||| ||| |  ||||||||||||||  || ||||||||||    
T  38261102 ttagaagagaatccagccattcaattttcattgttgtcacgaagtaaaccaccataaatcaatgtcatcggaagcaccacaactttaattaatattcaac 38261201  T
Q  120 ttaac 124  Q
    |||||    
T  38261202 ttaac 38261206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 3976046 - 3975995
Alignment:
Q  102 cttccatcaatattcaacttaacacatccatctggaggtggggtccaattaa 153  Q
    |||| |||||||||||||||||||||||||| | ||||||| ||||| ||||    
T  3976046 cttcaatcaatattcaacttaacacatccattttgaggtggagtccacttaa 3975995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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