View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6914_low_72 (Length: 202)
Name: NF6914_low_72
Description: NF6914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6914_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 29638629 - 29638802
Alignment:
| Q |
19 |
aaaaccttatctatcatccaacccgccaaacacttctcaatcttttttccaattacctcccccttatgagatgtgattggacaaaaattaagaattcttt |
118 |
Q |
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| T |
29638629 |
aaaaccttatctatcatccaaccctccaaacacttctcaatcttttttccaattacctcccccttatgagatgtgattggacaaaaattaagaattcttt |
29638728 |
T |
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| Q |
119 |
tatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcactgatgtccat |
192 |
Q |
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| T |
29638729 |
tatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcacagatgtccat |
29638802 |
T |
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Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 38336418 - 38336245
Alignment:
| Q |
19 |
aaaaccttatctatcatccaacccgccaaacacttctcaatcttttttccaattacctcccccttatgagatgtgattggacaaaaattaagaattcttt |
118 |
Q |
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| T |
38336418 |
aaaaccttatctatcatccaaccctccaaacacttctcaaacttttttccaattacctcccccttatgagatgtgattggacaaaaattaagaattcttt |
38336319 |
T |
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| Q |
119 |
tatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcactgatgtccat |
192 |
Q |
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| T |
38336318 |
tatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcacagatgtccat |
38336245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 20418635 - 20418808
Alignment:
| Q |
19 |
aaaaccttatctatcatccaacccgccaaacacttctcaatcttttttccaattacctcccccttatgagatgtgattggacaaaaattaagaattcttt |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418635 |
aaaaccttatctatcatccaaccctccaaacacttctcaaacttttttccaattacctcccccttatgagatgtgattggacaaaaattaagaattcttt |
20418734 |
T |
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| Q |
119 |
tatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcactgatgtccat |
192 |
Q |
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| T |
20418735 |
tatgcatcttccaatcttgatcaatgaaatgtgcagttagaaccatataattaatattttgcacagatgtccat |
20418808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 11217576 - 11217723
Alignment:
| Q |
37 |
caacccgccaaacacttctcaatctttt-ttccaattacctcccccttatgagatgtgattggacaaaaattaagaattcttttatgca---tcttccaa |
132 |
Q |
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|||||| | ||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||| || ||||| |
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| T |
11217576 |
caaccctctaaacacttctcaatctttttttccaattacctcctccctatgagatgtaattggacaaaaaacaagaattcttttatgcatcctcctccaa |
11217675 |
T |
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| Q |
133 |
tcttgatcaatgaaatgtgcagttagaaccatataattaatattttgc |
180 |
Q |
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|||||||||||||||| ||| || ||||||||||||||||| |||||| |
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| T |
11217676 |
tcttgatcaatgaaatttgcggtaagaaccatataattaatgttttgc |
11217723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 18348232 - 18348167
Alignment:
| Q |
94 |
attggacaaaaattaagaattcttttatgcatcttccaatcttgatcaatgaaatgtgcagttaga |
159 |
Q |
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| T |
18348232 |
attggacaaaaattaagaattcttttgtgcatcttccaatcttgatcaaagaaatgtgcagttaga |
18348167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 25345941 - 25345876
Alignment:
| Q |
94 |
attggacaaaaattaagaattcttttatgcatcttccaatcttgatcaatgaaatgtgcagttaga |
159 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |
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| T |
25345941 |
attggacaaaaattaagaattcttttgtgcaacttccaatcttgatcaataaaatgtgcagttaga |
25345876 |
T |
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