View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6915_low_4 (Length: 243)
Name: NF6915_low_4
Description: NF6915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6915_low_4 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 25207326 - 25207558
Alignment:
| Q |
11 |
gatggacatcatttggttttcagggtggataatgtgcggcaagtcatcttatcgtccatacttttcagagcatgtgctgaggcaatttagatatgttcag |
110 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || |||||||||| |||||||||||||||||||||| |
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| T |
25207326 |
gatggacatcatttggttttcagggtggacaatgtgcggcaagtcatgttatcgtccatacttgtcggagcatgtgcagaggcaatttagatatgttcag |
25207425 |
T |
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| Q |
111 |
aacattcctagaccttctactattagcgcaccatacacgttgagtacttatcagatggaacaggctttttaggattataatatgcatccgatatctaaag |
210 |
Q |
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|||||||||||| || || ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25207426 |
aacattcctagatctcctgctattagcgcaccatacacattgagtatttatcagatggaacatgctttttaggattataatatgcatccgatatctaaag |
25207525 |
T |
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| Q |
211 |
aagatcgtgggaaactggtggaaaatgattggc |
243 |
Q |
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| T |
25207526 |
aagatcgtgggcaactattggaaaatgattggc |
25207558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 32687797 - 32687568
Alignment:
| Q |
14 |
ggacatcatttggttttcagggtggataatgtgcggcaagtcatcttatcgtccatacttttcagagcatgtgctgaggcaatttagatatgttcagaac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| | |||| ||| ||||||||||| | | |||||||||| |
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| T |
32687797 |
ggacatcatttggttttcagggtggataatgtgcggtgtgtcatgttatcgtccacacttgccggagcgcgtgttgaggcaatttggttttgttcagaac |
32687698 |
T |
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| Q |
114 |
attcctagaccttctactattagcgcaccatacacgttgagtacttatcagatggaacaggctttttaggattataatatgcatccgatatctaaagaag |
213 |
Q |
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| T |
32687697 |
gttcctagacatcctgctattggcgcaccatgcacattgagtatttatcagatggaacaggcttttcaggattataatatgcatctgatatctgaagaag |
32687598 |
T |
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| Q |
214 |
atcgtgggaaactggtggaaaatgattggc |
243 |
Q |
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| T |
32687597 |
atcgtgggcaactagtggaaactgattggc |
32687568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 1199985 - 1199756
Alignment:
| Q |
14 |
ggacatcatttggttttcagggtggataatgtgcggcaagtcatcttatcgtccatacttttcagagcatgtgctgaggcaatttagatatgttcagaac |
113 |
Q |
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||||||||||||||||||||||||||||||||| || ||||| |||||||||| |||| |||||| ||| ||||||||||| | | |||||||||| |
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| T |
1199985 |
ggacatcatttggttttcagggtggataatgtgtggtgtgtcatgttatcgtccacacttgccagagcgcgtgttgaggcaatttggttttgttcagaac |
1199886 |
T |
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| Q |
114 |
attcctagaccttctactattagcgcaccatacacgttgagtacttatcagatggaacaggctttttaggattataatatgcatccgatatctaaagaag |
213 |
Q |
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| T |
1199885 |
gttcctagacatcctgctattggcgcaccatgcacattgagtatatatcagatggaacaggcttttcgggattataatacgcatctgatatctgaagaag |
1199786 |
T |
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| Q |
214 |
atcgtgggaaactggtggaaaatgattggc |
243 |
Q |
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| T |
1199785 |
atcgtgggcaactagtggaaactgattggc |
1199756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 29381187 - 29381046
Alignment:
| Q |
14 |
ggacatcatttggttttcagggtggataatgtgcggcaagtcatcttatcgtccatacttttcagagcatgtgctgaggcaatttagatatgttcagaac |
113 |
Q |
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||||||| ||||||||||||||||||||||||| ||| ||||| |||| ||||| |||| | ||||| ||||||||||||||| |||||||| ||||| |
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| T |
29381187 |
ggacatcgtttggttttcagggtggataatgtgttgcatgtcatgttattgtccacacttgccggagcacgtgctgaggcaatttggatatgttaagaac |
29381088 |
T |
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| Q |
114 |
attcctagaccttctactattagcgcaccatacacgttgagt |
155 |
Q |
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| T |
29381087 |
attcctagacatcctgctattggcgcaccatacacattgagt |
29381046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 47851466 - 47851358
Alignment:
| Q |
14 |
ggacatcatttggttttcagggtggataatgtgcggcaagtcatcttatcgtccatacttttcagagcatgtgctgaggcaatttagatatgttcagaac |
113 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||| || ||| || |||| |||||| ||||| |||||||||| |||||||||| | |
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| T |
47851466 |
ggacatcatttggttttcagggtagataatgtgcggcatgtcatgttttcgaacacacttgccagagcgtgtgcggaggcaatttggatatgttcaaact |
47851367 |
T |
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| Q |
114 |
attcctaga |
122 |
Q |
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||||||||| |
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| T |
47851366 |
attcctaga |
47851358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 18296028 - 18295800
Alignment:
| Q |
14 |
ggacatcatttggttttcagggtggataatgtgcggcaagtcatcttatcgtccatacttttcagagcatgtgctgaggcaatttagatatgttcagaac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| || ||| || |||| |||||| |||||||||||||||| |||||||||| | |
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| T |
18296028 |
ggacatcatttggttttcagggtggataatgtgcggcatgtcatgttttcgaacacacttgccagagcgtgtgctgaggcaatttggatatgttcaaact |
18295929 |
T |
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| Q |
114 |
attcctagaccttctactattagcgcaccatacacgttgagtacttatcagatggaacaggctttttaggattataatatgcatccgatatctaaagaag |
213 |
Q |
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||||||||| | || ||||| |||||| || | ||||| | | |||||| || | ||||||| ||||||||||| |||||| ||| ||| |||||| |
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| T |
18295928 |
attcctagaaatcctgctattgccgcaccgcactcattgagcattcatcagaaggcagaggctttccaggattataatctgcatctgatttctgaagaag |
18295829 |
T |
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| Q |
214 |
atcgtgggaaactggtggaaaatgattgg |
242 |
Q |
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| ||||| ||| ||||| ||||||||| |
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| T |
18295828 |
accgtggactacttgtggacaatgattgg |
18295800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 40609156 - 40609297
Alignment:
| Q |
14 |
ggacatcatttggttttcagggtggataatgtgcggcaagtcatcttatcgtccatacttttcagagcatgtgctgaggcaatttagatatgttcagaac |
113 |
Q |
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|||||||||||||||||||| | |||||||| |||| ||||| |||| ||||| |||| |||||| ||| ||||||||||| |||||||||| ||| |
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| T |
40609156 |
ggacatcatttggttttcagactaaataatgtgtggcatgtcatgttattgtccacacttgccagagcgcgtgttgaggcaatttggatatgttcataac |
40609255 |
T |
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| Q |
114 |
attcctagaccttctactattagcgcaccatacacgttgagt |
155 |
Q |
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|||||||||| | || ||||| ||||||||||||| |||||| |
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| T |
40609256 |
attcctagacatcctgctattggcgcaccatacacattgagt |
40609297 |
T |
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