View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6916_high_1 (Length: 496)

Name: NF6916_high_1
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6916_high_1
NF6916_high_1
[»] chr4 (2 HSPs)
chr4 (178-478)||(26830631-26830927)
chr4 (39-179)||(13893991-13894131)
[»] chr1 (2 HSPs)
chr1 (39-179)||(44305802-44305942)
chr1 (55-135)||(29845336-29845416)
[»] chr2 (2 HSPs)
chr2 (39-181)||(6049583-6049725)
chr2 (55-140)||(26661223-26661308)
[»] chr7 (2 HSPs)
chr7 (55-179)||(13331864-13331988)
chr7 (55-177)||(13342779-13342901)
[»] chr5 (1 HSPs)
chr5 (55-179)||(5672335-5672459)
[»] chr6 (2 HSPs)
chr6 (55-140)||(21481141-21481226)
chr6 (54-140)||(19700890-19700976)
[»] scaffold0586 (1 HSPs)
scaffold0586 (54-140)||(9321-9407)
[»] chr3 (2 HSPs)
chr3 (55-140)||(15762307-15762392)
chr3 (145-179)||(41416257-41416291)
[»] chr8 (2 HSPs)
chr8 (54-140)||(10637351-10637437)
chr8 (54-140)||(32718157-32718243)
[»] scaffold0500 (1 HSPs)
scaffold0500 (98-140)||(358-400)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 178 - 478
Target Start/End: Complemental strand, 26830927 - 26830631
Alignment:
Q  178 cttaatatgaataaatggataatccgtggtttgagctttagatcatgcatatcacaatatgccttttaaatgagccatgaaagggctagaccccaagcac 277  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26830927 cttaatatgaataaatggataatccgtggtttgagctttagatcgtgcatatcacaatatgccttttaaatgagccatgaaagggctagaccccaagcac 26830828  T
Q  278 ataaaattagaaacctaaaggccattaaggcaatagatataaaggcgggaatcgtgagatgcttattggtgtaaacctcctctaacggattgggttaatg 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  26830827 ataaaattagaaacctaaaggccattaaggcaatagatataaaggcgggaaccgtgagatgcttattggtgtaaacctcctccaacgggttgggttaatg 26830728  T
Q  378 cgtacatgaatcgtttgcgtaaagaaaatgagagaataagatgtggtggagttattagaggcagtgatatatggagagtggttaggtggttttgctaaat 477  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    ||||||||||||||||||||||||||||||    
T  26830727 cgtacatgaatcgtttgcgtaaagaaaaagagataataagatgtggtggagttattagaagcagtg----atggagagtggttaggtggttttgctaaat 26830632  T

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Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 13893991 - 13894131
Alignment:
Q  39 gaacgtgggggagctgctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagat 138  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13893991 gaacgtgggggagctgctttcctgggaaaaatgtattcctaggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagat 13894090  T
Q  139 tcttaagaatacattttcattccatgaaacaaacacaccct 179  Q
    || || |||||||||||||||||||||||||||||||||||    
T  13894091 tcctaggaatacattttcattccatgaaacaaacacaccct 13894131  T

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Target: chr1 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 44305942 - 44305802
Alignment:
Q  39 gaacgtgggggagctgctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagat 138  Q
    |||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44305942 gaacgtgggggagctgctttcctgggaaaaatgtattcttaggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagat 44305843  T
Q  139 tcttaagaatacattttcattccatgaaacaaacacaccct 179  Q
    || || |||||||||||||||||||||||||||||||||||    
T  44305842 tcctaggaatacattttcattccatgaaacaaacacaccct 44305802  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 29845416 - 29845336
Alignment:
Q  55 ctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctta 135  Q
    |||||||| | | ||| |||||||  ||||||||| ||| |||| ||||||||||||||| ||| ||||||| || |||||    
T  29845416 ctttcctgagtaaaatttattcctaagcatattttggttgttccaatctaccaaacaaaggaatatttaatttcaacctta 29845336  T

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Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 6049725 - 6049583
Alignment:
Q  39 gaacgtgggggagctgctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagat 138  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6049725 gaacgtgggggagctgctttcctgggaaaaatgtattcctaggcatatttttgtttttcccatctaccaaacatagcaatctttaattccagccttagat 6049626  T
Q  139 tcttaagaatacattttcattccatgaaacaaacacaccctta 181  Q
    || || ||||||||||| |||||||||||||||||||||||||    
T  6049625 tcctaggaatacatttttattccatgaaacaaacacaccctta 6049583  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 26661308 - 26661223
Alignment:
Q  55 ctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattc 140  Q
    |||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||||||    
T  26661308 ctttcctgggaaaaatgtattccttggcatatttgtgttattcccatctaccaaacaaagcaatattcaattccagccttagattc 26661223  T

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Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 13331864 - 13331988
Alignment:
Q  55 ctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattcttaagaatacattt 154  Q
    ||||||||  || ||||||||||||||||| ||| |||  ||||||||||||||| |||| ||| || |||||||||||||||||| || ||||||||||    
T  13331864 ctttcctgaaaaaaatgtattcctgggcatttttgtgtggttcccatctaccaaataaagaaatattcaattccagccttagattcctaggaatacattt 13331963  T
Q  155 tcattccatgaaacaaacacaccct 179  Q
    |||||||||||||||||||||||||    
T  13331964 tcattccatgaaacaaacacaccct 13331988  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 55 - 177
Target Start/End: Original strand, 13342779 - 13342901
Alignment:
Q  55 ctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattcttaagaatacattt 154  Q
    ||||||||  || |||||||||||| |||| ||| |||  ||||||||||||||| |||| ||| || |||||||||||||||||| || ||||||||||    
T  13342779 ctttcctgaaaaaaatgtattcctgagcatttttgtgtggttcccatctaccaaataaagaaatattcaattccagccttagattcctaggaatacattt 13342878  T
Q  155 tcattccatgaaacaaacacacc 177  Q
    |||||||||||||||||||||||    
T  13342879 tcattccatgaaacaaacacacc 13342901  T

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Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 5672335 - 5672459
Alignment:
Q  55 ctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattcttaagaatacattt 154  Q
    ||||||||| || |||||||||||| |||| ||| |||  ||||||||||||||| |||| ||| || |||||||||||||||||| || ||||||||||    
T  5672335 ctttcctggaaaaaatgtattcctgagcatttttgtgtggttcccatctaccaaataaagaaatattcaattccagccttagattcctaggaatacattt 5672434  T
Q  155 tcattccatgaaacaaacacaccct 179  Q
    |||||||||||||||||||||||||    
T  5672435 tcattccatgaaacaaacacaccct 5672459  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 21481226 - 21481141
Alignment:
Q  55 ctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattc 140  Q
    |||||||| ||| ||||||||||| || |||||| |||| |||||||||||||||||||||||| || ||||||||||||| ||||    
T  21481226 ctttcctgagaaaaatgtattccttggtatatttgtgttattcccatctaccaaacaaagcaatattcaattccagccttaaattc 21481141  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 19700976 - 19700890
Alignment:
Q  54 gctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattc 140  Q
    ||||||||||||| | ||||||||||| ||||||| |||  ||||||  |||||||||||| ||| |||||||||||||||||||||    
T  19700976 gctttcctgggaaaattgtattcctggacatatttgtgtggttcccacttaccaaacaaaggaatgtttaattccagccttagattc 19700890  T

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Target: scaffold0586 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 9407 - 9321
Alignment:
Q  54 gctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattc 140  Q
    ||||||||||||| | || |||||||| ||||||| |||  |||||| ||||||||||||| ||| |||||||||| ||||||||||    
T  9407 gctttcctgggaaaattgcattcctggacatatttgtgtggttcccacctaccaaacaaaggaatgtttaattccaaccttagattc 9321  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 15762307 - 15762392
Alignment:
Q  55 ctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattc 140  Q
    |||||||||||| ||||||||||| ||||||||| |||  | |||| ||||||||||||| ||| ||  |||||||||||||||||    
T  15762307 ctttcctgggaaaaatgtattcctaggcatatttgtgtggtacccacctaccaaacaaaggaatattcgattccagccttagattc 15762392  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 41416257 - 41416291
Alignment:
Q  145 gaatacattttcattccatgaaacaaacacaccct 179  Q
    |||||||||||||||||||| ||||||||||||||    
T  41416257 gaatacattttcattccatgtaacaaacacaccct 41416291  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 10637437 - 10637351
Alignment:
Q  54 gctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattc 140  Q
    ||||||||||||| | || |||||||| ||||||| |||  ||||||  |||||||||||| ||| |||||||||| ||||||||||    
T  10637437 gctttcctgggaaaattgcattcctggacatatttgtgtggttcccacttaccaaacaaaggaatgtttaattccaaccttagattc 10637351  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 32718157 - 32718243
Alignment:
Q  54 gctttcctgggaagaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagccttagattc 140  Q
    ||||||||||||| | || |||||| | ||||||| |||  ||||||  |||||||||||| ||| |||||||||| ||||||||||    
T  32718157 gctttcctgggaaaattgcattcctagacatatttgtgtggttcccacttaccaaacaaaggaatgtttaattccaaccttagattc 32718243  T

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Target: scaffold0500 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 358 - 400
Alignment:
Q  98 ccatctaccaaacaaagcaatctttaattccagccttagattc 140  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  358 ccatctaccaaacaaagcaatattcaattccagccttagattc 400  T

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