View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6916_high_12 (Length: 216)

Name: NF6916_high_12
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6916_high_12
NF6916_high_12
[»] chr2 (2 HSPs)
chr2 (1-208)||(26661413-26661620)
chr2 (1-113)||(6049912-6050025)
[»] chr6 (2 HSPs)
chr6 (1-208)||(21481331-21481538)
chr6 (1-111)||(19701161-19701272)
[»] chr7 (3 HSPs)
chr7 (1-187)||(13331543-13331727)
chr7 (1-187)||(13342458-13342642)
chr7 (30-113)||(33430271-33430355)
[»] chr5 (1 HSPs)
chr5 (1-187)||(5672014-5672198)
[»] chr8 (2 HSPs)
chr8 (1-187)||(32717834-32718020)
chr8 (1-187)||(10637574-10637760)
[»] chr1 (2 HSPs)
chr1 (1-187)||(22893729-22893915)
chr1 (1-113)||(44306129-44306241)
[»] chr3 (1 HSPs)
chr3 (1-170)||(15761985-15762154)
[»] scaffold0586 (1 HSPs)
scaffold0586 (1-111)||(9594-9705)
[»] chr4 (1 HSPs)
chr4 (1-96)||(13893715-13893810)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 26661620 - 26661413
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661620 ctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaa 26661521  T
Q  101 agatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaagggtagaagaggtata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26661520 agatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaagggtagaagaggtatt 26661421  T
Q  201 ttattgga 208  Q
    || |||||    
T  26661420 ttgttgga 26661413  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 6050025 - 6049912
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcaca-caca 99  Q
    |||||||||||||||||||||||   | |||||| |||||||||||||| |||||||||||||| | |||| || | |||||||||||||| ||| ||||    
T  6050025 ctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatgaacaccaca 6049926  T
Q  100 aagatcatgggttt 113  Q
    ||||| ||||||||    
T  6049925 aagatgatgggttt 6049912  T

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Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 21481538 - 21481331
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21481538 ctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaa 21481439  T
Q  101 agatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaagggtagaagaggtata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  21481438 agatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcaggaatggcaagggtagaagaggtatt 21481339  T
Q  201 ttattgga 208  Q
    || |||||    
T  21481338 ttgttgga 21481331  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 19701272 - 19701161
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac-aca 99  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| |||| ||||||||| ||||| ||| | |||||||||||||| |||| |||    
T  19701272 ctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaaatagcaagcagttgatgaacactaca 19701173  T
Q  100 aagatcatgggt 111  Q
    ||||||||||||    
T  19701172 aagatcatgggt 19701161  T

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Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 13331543 - 13331727
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaa 100  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||    
T  13331543 ctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaa 13331642  T
Q  101 agatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaaggg 187  Q
    ||||||||||||   ||||||| |||| | |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  13331643 agatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatggcaaggg 13331727  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 13342458 - 13342642
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaa 100  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||    
T  13342458 ctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaa 13342557  T
Q  101 agatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaaggg 187  Q
    ||||||||||||   ||||||| |||| | |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  13342558 agatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaaggg 13342642  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 33430271 - 33430355
Alignment:
Q  30 aaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcaca-cacaaagatcatgggttt 113  Q
    |||||||||||||||||||| |||| ||||||||  |||| |||| | |||| || |||||| ||| | |||||||| |||||||    
T  33430271 aaattagatggtaccttgaagagaatagtgaaattcaaaatccaaatagcaaacacttgatgaacacctcaaagatcgtgggttt 33430355  T

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Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 5672014 - 5672198
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaa 100  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||    
T  5672014 ctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaa 5672113  T
Q  101 agatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaaggg 187  Q
    ||||||||||||   ||||||| |||| | |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  5672114 agatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatcagag--aaagaatagcgggaatgacaaggg 5672198  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 32717834 - 32718020
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac-aca 99  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||| |||   |||||||||||||| |||| |||    
T  32717834 ctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactaca 32717933  T
Q  100 aagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaat--cagagaaaaagaatagcgggaatggcaaggg 187  Q
    ||||| |||||||||||||| || |||| ||||||||||||||   |||||||||||  ||||||||||   ||||||||||||||||||    
T  32717934 aagataatgggtttcttttt-tatagaagatcatgggtgaaaa-aattagcgggaatagcagagaaaaa-tttagcgggaatggcaaggg 32718020  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 10637760 - 10637574
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac-aca 99  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||   |||||||||||||| |||| |||    
T  10637760 ctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactaca 10637661  T
Q  100 aagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaat--cagagaaaaagaatagcgggaatggcaaggg 187  Q
    ||||| |||||||||||||| || |||| ||||||||||||||   |||||||||||  ||||||||||   ||||||||||||||||||    
T  10637660 aagataatgggtttcttttt-tatagaagatcatgggtgaaaa-aattagcgggaatagcagagaaaaa-tttagcgggaatggcaaggg 10637574  T

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Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 22893915 - 22893729
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac-aca 99  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||   |||||||||||||| |||| |||    
T  22893915 ctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactaca 22893816  T
Q  100 aagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaat--cagagaaaaagaatagcgggaatggcaaggg 187  Q
    ||||||||||||||| |||| || |||| ||||||||||||||   |||||||||||  ||||||||||   ||||||||||||||||||    
T  22893815 aagatcatgggtttcctttt-tatagaagatcatgggtgaaaa-aattagcgggaatagcagagaaaaa-tttagcgggaatggcaaggg 22893729  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 44306241 - 44306129
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcaca-caca 99  Q
    |||||||||||||||||||||||   | ||| || |||||||||||||| |||||||||||||| | |||| || | |||||||||||||| ||| ||||    
T  44306241 ctatgttgagtaatggaagaattgaaaagaattt-gatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatgaacaccaca 44306143  T
Q  100 aagatcatgggttt 113  Q
    ||||| ||||||||    
T  44306142 aagatgatgggttt 44306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 15761985 - 15762154
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaa 100  Q
    |||||||||||||| ||||||||  |||||||||||||||||| ||||| |||| ||||||||||||| || |||| ||||  |||||||| ||| ||||    
T  15761985 ctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttgatgaacatacaa 15762084  T
Q  101 agatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaat 170  Q
    |||||||  | |  |||||||| |||| | |||| |||||||||||||| ||||||||||||||||||||    
T  15762085 agatcatatgatgttttttatatagaagaacatgagtgaaaatgtttagtgggaatcagagaaaaagaat 15762154  T

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Target: scaffold0586 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 9705 - 9594
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac-aca 99  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||| |||    ||||||||||||| |||| |||    
T  9705 ctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacaacaagcagttgatgaacactaca 9606  T
Q  100 aagatcatgggt 111  Q
    ||||||||||||    
T  9605 aagatcatgggt 9594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 13893715 - 13893810
Alignment:
Q  1 ctatgttgagtaatggaagaattatgatgaaattagatggtaccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacac 96  Q
    |||||||||||||||||||||||   | |||||| |||||||||||||| |||||||||||||| | |||| || |  ||||||||||||| ||||    
T  13893715 ctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataacaagcagttgatgaacac 13893810  T

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