View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6916_high_13 (Length: 215)

Name: NF6916_high_13
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6916_high_13
NF6916_high_13
[»] chr5 (12 HSPs)
chr5 (119-187)||(12044013-12044081)
chr5 (119-186)||(557840-557907)
chr5 (119-186)||(562610-562677)
chr5 (119-186)||(36936393-36936460)
chr5 (119-186)||(36941147-36941214)
chr5 (119-186)||(41997787-41997854)
chr5 (119-186)||(32460427-32460494)
chr5 (119-186)||(42002578-42002645)
chr5 (119-186)||(3667017-3667083)
chr5 (119-184)||(14232586-14232650)
chr5 (119-186)||(21322921-21322986)
chr5 (119-186)||(24435064-24435129)
[»] scaffold0182 (1 HSPs)
scaffold0182 (119-186)||(8764-8831)
[»] chr8 (5 HSPs)
chr8 (119-186)||(31448747-31448814)
chr8 (119-188)||(4237222-4237291)
chr8 (119-186)||(4241963-4242030)
chr8 (119-186)||(43301626-43301693)
chr8 (119-186)||(37772863-37772928)
[»] chr3 (7 HSPs)
chr3 (119-186)||(8070821-8070888)
chr3 (119-186)||(3034788-3034855)
chr3 (119-186)||(3673710-3673777)
chr3 (119-186)||(8884315-8884382)
chr3 (119-186)||(8889061-8889128)
chr3 (121-186)||(3693766-3693831)
chr3 (119-186)||(45903239-45903304)
[»] chr6 (5 HSPs)
chr6 (17-91)||(32468935-32469009)
chr6 (136-189)||(24588519-24588571)
chr6 (139-191)||(28963735-28963786)
chr6 (119-186)||(2881729-2881795)
chr6 (119-186)||(2862426-2862492)
[»] chr2 (4 HSPs)
chr2 (119-186)||(10159601-10159668)
chr2 (119-186)||(30659301-30659368)
chr2 (132-186)||(35602750-35602804)
chr2 (119-187)||(6296795-6296861)
[»] chr7 (14 HSPs)
chr7 (126-186)||(47102682-47102742)
chr7 (119-186)||(9649844-9649910)
chr7 (119-177)||(23866867-23866924)
chr7 (123-186)||(8077157-8077223)
chr7 (119-186)||(13343311-13343377)
chr7 (119-184)||(13346249-13346313)
chr7 (119-186)||(10499011-10499077)
chr7 (119-186)||(10504040-10504106)
chr7 (120-186)||(11016794-11016858)
chr7 (138-186)||(7839501-7839548)
chr7 (119-186)||(27257364-27257429)
chr7 (119-186)||(40863960-40864025)
chr7 (119-186)||(40864281-40864346)
chr7 (138-186)||(40997727-40997774)
[»] chr4 (5 HSPs)
chr4 (119-186)||(13520869-13520935)
chr4 (119-185)||(31297409-31297475)
chr4 (119-186)||(39320702-39320768)
chr4 (134-180)||(15799036-15799079)
chr4 (119-186)||(7899838-7899903)
[»] chr1 (4 HSPs)
chr1 (119-186)||(3095233-3095300)
chr1 (124-186)||(8273059-8273120)
chr1 (136-183)||(27307360-27307406)
chr1 (119-186)||(14204447-14204515)
[»] scaffold0628 (2 HSPs)
scaffold0628 (119-186)||(5811-5877)
scaffold0628 (119-186)||(7579-7645)
[»] scaffold0045 (1 HSPs)
scaffold0045 (119-186)||(84053-84120)
[»] scaffold0008 (1 HSPs)
scaffold0008 (121-177)||(257783-257838)
[»] scaffold0041 (1 HSPs)
scaffold0041 (119-188)||(34603-34670)
[»] scaffold0070 (2 HSPs)
scaffold0070 (119-186)||(59552-59617)
scaffold0070 (119-186)||(63754-63819)


Alignment Details
Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 12044081 - 12044013
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaacac 187  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12044081 actagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaacac 12044013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 557840 - 557907
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  557840 actagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 557907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 562610 - 562677
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  562610 actagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 562677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 36936460 - 36936393
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36936460 actagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 36936393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 36941214 - 36941147
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36941214 actagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 36941147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 41997787 - 41997854
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41997787 actagttctacccaacatgggaatttgtgtttagtctttttaactcaattttcacacatgttccaaca 41997854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 32460494 - 32460427
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  32460494 actagttctacccaacatgggaatttgtgattagtctttttaactcaatttcaacacatgttccaaca 32460427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 42002578 - 42002645
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42002578 actagttctacccaacatatgaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 42002645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 3667017 - 3667083
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||| ||||||  ||||||  ||||||||||||||||||||| |||||||||||||||||||||||||    
T  3667017 actatttctacacaacatgaaaatttgtgtttagtcttttta-ctcaatttccacacatgttccaaca 3667083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 14232650 - 14232586
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaa 184  Q
    |||||| ||||| ||  ||| |||||||||||||| ||||||||||||||||||||  ||||||||    
T  14232650 actagtgctacccaatgtggaaatttgtgtttagt-tttttaactcaatttccacatttgttccaa 14232586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 21322986 - 21322921
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  21322986 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 21322921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 24435129 - 24435064
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  24435129 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 24435064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 8831 - 8764
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8831 actagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 8764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 31448814 - 31448747
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31448814 actagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 31448747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 4237291 - 4237222
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaacact 188  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4237291 actagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaacact 4237222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 4242030 - 4241963
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4242030 actagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 4241963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 43301693 - 43301626
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| || |||| ||||||||||||||||||||||||||||||||||| || ||||||||    
T  43301693 actagttctacccaagatggaaatttgtgtttagtctttttaactcaatttccacaaatcttccaaca 43301626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 37772863 - 37772928
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  37772863 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 37772928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 8070821 - 8070888
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8070821 actagttctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 8070888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 3034788 - 3034855
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3034788 actagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 3034855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 3673710 - 3673777
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3673710 actagttctacccaacatgggaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 3673777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 8884315 - 8884382
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8884315 actagttctacccaacatgggaatttgtgtttagtctttttaactcagtttccacacatgttccaaca 8884382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 8889061 - 8889128
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8889061 actaattctacccaacatgggaatttgtgtttagtctttttaactcagtttccacacatgttccaaca 8889128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 3693766 - 3693831
Alignment:
Q  121 tagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3693766 tagttctacccaacatgagaatttgtgtttagtctgtttaactcaatttccacacatgttccaaca 3693831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 45903304 - 45903239
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  45903304 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 45903239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 32469009 - 32468935
Alignment:
Q  17 caaatagatcttaagagaatagggtggacaaaagcacaagacttgagccaacgatcgttaaactaaggaacttat 91  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  32469009 caaatagatcttaagagaatagtgtggacaaaagcacaagacttgagccaacgatcgtaaaactatggaacttat 32468935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 24588571 - 24588519
Alignment:
Q  136 tgggaatttgtgtttagtctttttaactcaatttccacacatgttccaacactt 189  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24588571 tgggaatttgtgtttagtcttttta-ctcaatttccacacatgttccaacactt 24588519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 28963786 - 28963735
Alignment:
Q  139 gaatttgtgtttagtctttttaactcaatttccacacatgttccaacacttat 191  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  28963786 gaatttgtgtttggtctttt-aactcaatttccacacatgttccaacacttat 28963735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 2881795 - 2881729
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||||||  || |||||||||| |||| |||||||||||||||  |||||||||||||||    
T  2881795 actagttctaccaaatgtgagaatttgtgtctagt-tttttaactcaatttttacacatgttccaaca 2881729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 2862492 - 2862426
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||| ||||||||||  || |||||||||| |||| |||||||||||||||  |||||||||||||||    
T  2862492 actaattctaccaaatgtgagaatttgtgtctagt-tttttaactcaatttttacacatgttccaaca 2862426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 10159668 - 10159601
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10159668 actagttctacctaacatgggaatttgtgtttagtctttttaactcaatttccacagatgttccaaca 10159601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 30659301 - 30659368
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  30659301 actagttctacccaacatgggagtttttgtttagtctttttaactcaatttccacacatgttccaaca 30659368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 35602750 - 35602804
Alignment:
Q  132 aacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35602750 aacatgagaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 35602804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 6296861 - 6296795
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaacac 187  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| ||||||||||||    
T  6296861 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaacac 6296795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 47102682 - 47102742
Alignment:
Q  126 ctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47102682 ctacccaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 47102742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 9649910 - 9649844
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9649910 actagttctacccaacatgggaatttgtgtttagtc-ttttaactcaatttccacacatgttccaaca 9649844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 23866867 - 23866924
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacat 177  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||    
T  23866867 actagttctacccaacatgggaatttgtgtttagtc-ttttaactcaattttcacacat 23866924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 8077157 - 8077223
Alignment:
Q  123 gttctaccaaacatgggaatttgtgtttagtctttt---taactcaatttccacacatgttccaaca 186  Q
    |||| ||| ||||| ||||||||| |||||||||||   ||||||||||||||||||||||||||||    
T  8077157 gttccacccaacataggaatttgtctttagtcttttttttaactcaatttccacacatgttccaaca 8077223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 13343377 - 13343311
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| ||| ||  ||||||||||| ||||||| || ||||||||||||||||||||||||    
T  13343377 actagttctacccaacgtgaaaatttgtgttttgtctttt-aattcaatttccacacatgttccaaca 13343311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 13346313 - 13346249
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaa 184  Q
    |||||||||||||||| ||  ||||| ||||| ||||||| || ||||||||||||||||||||||    
T  13346313 actagttctaccaaacgtgaaaatttatgttttgtctttt-aattcaatttccacacatgttccaa 13346249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 10499077 - 10499011
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    ||||||||||||  || | | ||||| ||||||||||||| || ||||||||||||||||||||||||    
T  10499077 actagttctaccttacgttgaaatttatgtttagtctttt-aattcaatttccacacatgttccaaca 10499011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 10504106 - 10504040
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    ||||||||||||  || | | ||||| ||||||||||||| || ||||||||||||||||||||||||    
T  10504106 actagttctaccttacgttgaaatttatgtttagtctttt-aattcaatttccacacatgttccaaca 10504040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 11016858 - 11016794
Alignment:
Q  120 ctagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    ||||||||||| |  |||||||||||| |||||||  ||  ||||||||||||||||||||||||||    
T  11016858 ctagttctacctattatgggaatttgtatttagtcaatt--actcaatttccacacatgttccaaca 11016794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 7839501 - 7839548
Alignment:
Q  138 ggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||| ||||    
T  7839501 ggaatttgtgtttagtc-ttttaagtcaatttgcacacatgttcgaaca 7839548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 27257364 - 27257429
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  27257364 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 27257429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 40864025 - 40863960
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  40864025 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 40863960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 40864346 - 40864281
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  40864346 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 40864281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 40997774 - 40997727
Alignment:
Q  138 ggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    ||||||||| ||||||||||| ||||||||||| |||| ||||||||||    
T  40997774 ggaatttgtatttagtctttt-aactcaatttctacacttgttccaaca 40997727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 13520935 - 13520869
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13520935 actagttctacccaacatgggaatttgtgtttagtc-ttttaactcaatttccacacatgttccaaca 13520869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 31297475 - 31297409
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaac 185  Q
    |||||||||||| |||||| |||||||||||||| |||||| ||||||||||||| |||||||||||    
T  31297475 actagttctacccaacatgagaatttgtgtttagccttttttactcaatttccacgcatgttccaac 31297409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 39320702 - 39320768
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |||||| |||||||| |||| |||||| |||||||||||||||||||||||||||    
T  39320702 actagttctacccaacatgcgaatttgtatttaatctttt-aactcaatttccacacatgttccaaca 39320768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 15799079 - 15799036
Alignment:
Q  134 catgggaatttgtgtttagtctttttaactcaatttccacacatgtt 180  Q
    |||||||||||||||||||||||   |||||||||||||||||||||    
T  15799079 catgggaatttgtgtttagtctt---aactcaatttccacacatgtt 15799036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 7899903 - 7899838
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  7899903 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 7899838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 3095233 - 3095300
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| ||||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  3095233 actagttctacccaacatggaaatttgtgtttagtttgtttaactcaatttccacacatgttccaaca 3095300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 8273120 - 8273059
Alignment:
Q  124 ttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    ||||||| ||| |||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  8273120 ttctacccaacgtgggaatttgtgtttatt-tttttaactcaatttccacacatgtttcaaca 8273059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 27307406 - 27307360
Alignment:
Q  136 tgggaatttgtgtttagtctttttaactcaatttccacacatgttcca 183  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  27307406 tgggaatttgtgtttagtc-ttttacctcaatatccacacatgttcca 27307360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 14204515 - 14204447
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgttta--gtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||| ||| |||||  |||||||||||||  | ||||||| |||||||||||||||||||||||||    
T  14204515 actagttccacccaacataagaatttgtgtttatagacttttta-ctcaatttccacacatgttccaaca 14204447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 5811 - 5877
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    ||||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  5811 actagttctaccaaatatgagaatttgtgtttagtatttt-aactcaatttccacacatgttccaaca 5877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 7579 - 7645
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    ||||||||||||||||| | ||||||||||||  |   ||||||||||||||||||||||||||||||    
T  7579 actagttctaccaaacaagagaatttgtgtttcct-actttaactcaatttccacacatgttccaaca 7645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 84053 - 84120
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| ||||| | ||||||||||||||||||||||  |||||||||||||||||||||||    
T  84053 actagttctacccaacatagaaatttgtgtttagtctttttaatccaatttccacacatgttccaaca 84120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 257783 - 257838
Alignment:
Q  121 tagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacat 177  Q
    |||||||||  |||||  |||||||||||||||| ||||||||||||||||||||||    
T  257783 tagttctactcaacataagaatttgtgtttagtc-ttttaactcaatttccacacat 257838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 34670 - 34603
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaacact 188  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| |||||||||||||    
T  34670 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaacact 34603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 59552 - 59617
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  59552 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 59617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 63754 - 63819
Alignment:
Q  119 actagttctaccaaacatgggaatttgtgtttagtctttttaactcaatttccacacatgttccaaca 186  Q
    |||||||||||| |   |||||||||||||||||||  ||  |||||||||||||| |||||||||||    
T  63754 actagttctacccattgtgggaatttgtgtttagtcaatt--actcaatttccacatatgttccaaca 63819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University