View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6916_high_3 (Length: 328)
Name: NF6916_high_3
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6916_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 38995530 - 38995217
Alignment:
| Q |
1 |
taatcaagatggctgtttttgtaagcaatttaaactgttagtaattttttgtttgttatttggtgtggttttagggaggatatgtagacaccgaaacatt |
100 |
Q |
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| T |
38995530 |
taatcaagatggctgtttttgtaagcaatttaaactgttagtaattttttgtttgttatttggtgtggttttagggaggatatgtagacaccgaaacatt |
38995431 |
T |
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| Q |
101 |
gagttgataattcaccgtccataatcttatacattgataaagttgggagagcaatgaaatgttatctgttgaaggtaaggataagcaagtgcatcaaatt |
200 |
Q |
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| T |
38995430 |
gagttgataattcaccgtccataatctcatacattgataaagttgggagagcaatgaaatgttatctgttgaaggtaaggataagcaagtgcatcaaatt |
38995331 |
T |
|
| Q |
201 |
taagtattaaataatatagtagtatgcaaggtatatgtttagaggaagcaaatttgttatgtgtcaaagttaaaacgtaagagataaaagaaattaatta |
300 |
Q |
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| T |
38995330 |
taagtattaaataatatagtagtatgcaaggtatatgtttagaggaagcaaatttgttatgtgtcaaagttaaaacgtaagagataaaagaaattaatta |
38995231 |
T |
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| Q |
301 |
tgaaagactgatgt |
314 |
Q |
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||||||||| |||| |
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| T |
38995230 |
tgaaagactcatgt |
38995217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 39483464 - 39483369
Alignment:
| Q |
8 |
gatggctgtttttgtaagcaatttaaactgttagtaattttttgtttgttatttggtgtggttttagggaggatatgtagacaccgaaacattgag |
103 |
Q |
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||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||| |
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| T |
39483464 |
gatggctgtttttgtaagcaatttaaagtattagtaactttttgtttgttatttggtgtagtttcagggaggatgtgtagacactgaaacattgag |
39483369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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