View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6916_low_11 (Length: 239)
Name: NF6916_low_11
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6916_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 100 - 228
Target Start/End: Original strand, 25143280 - 25143408
Alignment:
| Q |
100 |
ctttctcagcagcaaccacaaaacaaatctagatctagatccaaatccgggtctaaaaactaccaccacgagccaccaccagatccaccgcaaaatcacc |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25143280 |
ctttctcagcagcaaccacaaaacggatctagatctagatccaaatccgggtctaaaaactaccaccacgagccaccaccagatccaccgcaaaatcacc |
25143379 |
T |
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| Q |
200 |
accagcatccctgaaaaccaacacgaaac |
228 |
Q |
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| T |
25143380 |
accagcatccacgaaaaccaccacgaaac |
25143408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 31039377 - 31039506
Alignment:
| Q |
99 |
gctttctcagcagcaaccacaaaacaaatctagatctagatccaaatccgggtctaaaaactaccaccacgagccaccaccagatccaccgcaaaatcac |
198 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31039377 |
gctttctcaacagcaaccacaaaacggatctagatctagatccaaatccgggtctaaaaactaccaccacgagccaccaccagatccatcgcaaaatcac |
31039476 |
T |
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| Q |
199 |
caccagcatccctgaaaaccaacacgaaac |
228 |
Q |
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||| | ||||||||||||||| |||||||| |
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| T |
31039477 |
cacgaacatccctgaaaaccaccacgaaac |
31039506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 27262367 - 27262468
Alignment:
| Q |
100 |
ctttctcagcagcaaccacaaaacaaatctagatctagatccaaatccgggtctaaaaactaccaccacgagccaccaccagatccaccgcaaaatcacc |
199 |
Q |
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||||||||||| | | ||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
27262367 |
ctttctcagcaaccatcacaaaagggatctagatctagatccaaatccgaatctaaaaactacaaccacgagccaccaccagatccaccgcgaaatcacc |
27262466 |
T |
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| Q |
200 |
ac |
201 |
Q |
| |
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|| |
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| T |
27262467 |
ac |
27262468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 28164590 - 28164531
Alignment:
| Q |
99 |
gctttctcagcagcaaccacaaaacaaatctagatctagatccaaatccgggtctaaaaa |
158 |
Q |
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||||||||| ||||||||||||||| |||||||||||||| ||||| |||||||||||| |
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| T |
28164590 |
gctttctcaacagcaaccacaaaacggatctagatctagattcaaattcgggtctaaaaa |
28164531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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