View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6916_low_12 (Length: 238)
Name: NF6916_low_12
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6916_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39732896 - 39733118
Alignment:
| Q |
1 |
tagttcctgtgtgtatttatcatctgtgatcccttctaatgttttttcttttatctgatcaggcatgtaattattttcccagaaggggacaatgcgatgg |
100 |
Q |
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| T |
39732896 |
tagttcctgtgtgtatttatcatctgtgatcccttctaatgttttttcttttatctgatcaggcatgtaattattttcccagaaggggacaatgcgatgg |
39732995 |
T |
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| Q |
101 |
accatttgtccatgtattttggcgttgcagattcagaaaatttgcccaacggttggagtatttatgcacagtttagcatgtcattagttaatcaaatcaa |
200 |
Q |
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| T |
39732996 |
accatttgtccatgtattttggcgttgcagattcagaaaatttgcccaacggttggagtatttatgcacagtttaccatgtctttagttaatcaaatcaa |
39733095 |
T |
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| Q |
201 |
tgctgaggactctgtgacaaaag |
223 |
Q |
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| T |
39733096 |
tgctgaggactctgtgacaaaag |
39733118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 39868018 - 39867877
Alignment:
| Q |
60 |
caggcatgtaattattttcccagaaggggacaatgcgatggaccatttgtccatgtattttggcgttgcagattcagaaaatttgcccaacggttggagt |
159 |
Q |
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| T |
39868018 |
caggcgtgtacttcttttcccaaaagggaacaatgtgtcggaccatttgtccatgtatttggatgttcaagattcagctaatttgcccaatggttggagt |
39867919 |
T |
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| Q |
160 |
atttatgcacagtttagcatgtcattagttaatcaaatcaat |
201 |
Q |
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| T |
39867918 |
agttatgcacagtttagcttgacagtagttaatcaaatcaat |
39867877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 37476723 - 37476603
Alignment:
| Q |
54 |
tctgatcaggcatgtaattattttcccagaaggggacaatgcgatggaccatttgtccatgtattttggcgttgcagattcagaaaatttgcccaacggt |
153 |
Q |
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||||| ||||| |||| ||||||| ||| ||||| |||| | ||||| |||||||||||||||| | |||||||||||| | | ||||| ||||| |
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| T |
37476723 |
tctgaacaggcgtgtacttatttttccaaaagggaacaacg---tggactatttgtccatgtatttggatgttgcagattcaactagtctgccctacggt |
37476627 |
T |
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| Q |
154 |
tggagtatttatgcacagtttagc |
177 |
Q |
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||||||| ||||||||||||||| |
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| T |
37476626 |
tggagtagatatgcacagtttagc |
37476603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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