View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6916_low_13 (Length: 232)

Name: NF6916_low_13
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6916_low_13
NF6916_low_13
[»] chr8 (2 HSPs)
chr8 (41-159)||(30436276-30436394)
chr8 (41-159)||(35813246-35813364)
[»] chr7 (9 HSPs)
chr7 (41-159)||(10993364-10993482)
chr7 (41-160)||(39489254-39489367)
chr7 (63-156)||(4267504-4267594)
chr7 (63-149)||(17475069-17475152)
chr7 (63-149)||(17578062-17578145)
chr7 (63-149)||(41202465-41202548)
chr7 (63-156)||(17510653-17510743)
chr7 (63-156)||(17542471-17542561)
chr7 (63-156)||(49113204-49113294)
[»] chr5 (6 HSPs)
chr5 (41-159)||(6238360-6238478)
chr5 (41-159)||(6900070-6900188)
chr5 (41-159)||(24477460-24477578)
chr5 (41-160)||(4970449-4970558)
chr5 (63-160)||(20337850-20337944)
chr5 (63-149)||(3436078-3436161)
[»] chr4 (4 HSPs)
chr4 (41-159)||(17543926-17544044)
chr4 (41-160)||(3410032-3410143)
chr4 (63-149)||(50005368-50005451)
chr4 (105-149)||(16030311-16030355)
[»] chr3 (5 HSPs)
chr3 (41-159)||(43746095-43746213)
chr3 (41-160)||(27972299-27972418)
chr3 (66-129)||(33985916-33985979)
chr3 (96-156)||(50737326-50737386)
chr3 (96-156)||(50775469-50775529)
[»] chr6 (7 HSPs)
chr6 (41-160)||(26519631-26519750)
chr6 (41-160)||(31471175-31471294)
chr6 (52-160)||(20143359-20143459)
chr6 (52-160)||(22189380-22189480)
chr6 (63-149)||(12271574-12271657)
chr6 (63-156)||(12076009-12076099)
chr6 (177-213)||(11369525-11369561)
[»] scaffold0564 (1 HSPs)
scaffold0564 (41-160)||(10042-10155)
[»] chr1 (7 HSPs)
chr1 (42-160)||(12749658-12749770)
chr1 (96-156)||(45566398-45566458)
chr1 (96-156)||(17331944-17332004)
chr1 (63-156)||(49228652-49228742)
chr1 (110-156)||(24682484-24682530)
chr1 (110-156)||(48469817-48469863)
chr1 (177-213)||(45757186-45757222)
[»] chr2 (2 HSPs)
chr2 (63-149)||(9471494-9471577)
chr2 (96-160)||(17921344-17921407)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 30436276 - 30436394
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30436276 ccttccctttctttaaggattgaacataataacttaaatatacacaaataggttaatagtgaacaaaagataaattaagattgatccaagataataacaa 30436375  T
Q  141 ttatccatagtaacattaa 159  Q
    |||||||||||||||||||    
T  30436376 ttatccatagtaacattaa 30436394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 35813246 - 35813364
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||    
T  35813246 ccttccctttttttaaggattgaacataataacttaaatttacacaaataggttaatagtgaacaaaaaataatttaaaattgatccaagataataacaa 35813345  T
Q  141 ttatccatagtaacattaa 159  Q
    |||||||||||||||||||    
T  35813346 ttatccatagtaacattaa 35813364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 10993482 - 10993364
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10993482 ccttccctttctttaaggattgaacataataacttaaatatacacaaataggttaatagtgaacaaaagataaattaagattgatccaagataataacaa 10993383  T
Q  141 ttatccatagtaacattaa 159  Q
    |||||||||||||||||||    
T  10993382 ttatccatagtaacattaa 10993364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 39489254 - 39489367
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacac----aaataggttaatagtaaacaaaagataaattaagattgatccaagataata 136  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    ||||||| ||||||| |||||          | ||||||||||||||||||    
T  39489254 ccttcccattctttaaggattgaacataataacttaaatatacacaaataaataggctaatagtgaacaa----------atgattgatccaagataata 39489343  T
Q  137 acaattatccatagtaacattaac 160  Q
    ||||||||| ||||||||||||||    
T  39489344 acaattatctatagtaacattaac 39489367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 4267594 - 4267504
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    ||||||||||| ||||| ||||||||    || ||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||    
T  4267594 aacataataacataaatgtacacaaaa---tttatagtgaacaaaagataaattaagtttggtccaagagaataacaattatccatactaacat 4267504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 17475069 - 17475152
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccata 149  Q
    ||||||||||| ||||| ||||||||    || ||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  17475069 aacataataacataaatgtacacaaaa---tttatagtgaacaaaagataaattaagtttggtccaagagaataacaattatccata 17475152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 17578145 - 17578062
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccata 149  Q
    ||||||||||| ||||| ||||||||    || ||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  17578145 aacataataacataaatgtacacaaaa---tttatagtgaacaaaagataaattaagtttggtccaagagaataacaattatccata 17578062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 41202548 - 41202465
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccata 149  Q
    ||||||||||| ||||| ||||||||    || ||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  41202548 aacataataacataaatgtacacaaaa---tttatagtgaacaaaagataaattaagtttggtccaagagaataacaattatccata 41202465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 17510653 - 17510743
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    ||||||||||| ||||| ||||||||    || ||||| |||||||||||||||||| ||| ||||| | ||||||||||||||||| ||||||    
T  17510653 aacataataacataaatgtacacaaaa---tttatagtgaacaaaagataaattaagtttggtccaaaagaataacaattatccatactaacat 17510743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 17542561 - 17542471
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    ||||||||||| ||||| ||||||||    || ||||| |||||||||||||||||| ||| ||||| | ||||||||||||||||| ||||||    
T  17542561 aacataataacataaatgtacacaaaa---tttatagtgaacaaaagataaattaagtttggtccaaaagaataacaattatccatactaacat 17542471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 49113294 - 49113204
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    ||||||||||| ||||| ||||||||    || ||||| |||||||||||||||||| ||| ||||||| |||||||||||| |||| ||||||    
T  49113294 aacataataacataaatgtacacaaaa---tttatagtgaacaaaagataaattaagtttggtccaagagaataacaattattcatactaacat 49113204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 6238478 - 6238360
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6238478 ccttccctttctttaaggattgaacataataacttaaatatacacaaataggttaatagtgaacaaaagataaattaagattgatccaagataataacaa 6238379  T
Q  141 ttatccatagtaacattaa 159  Q
    |||||||||||||||||||    
T  6238378 ttatccatagtaacattaa 6238360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 6900188 - 6900070
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6900188 ccttccctttctttaaggattgaacataataacttaaatatacacaaataggttaatagtgaacaaaagataaattaagattgatccaagataataacaa 6900089  T
Q  141 ttatccatagtaacattaa 159  Q
    |||||||||||||||||||    
T  6900088 ttatccatagtaacattaa 6900070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 24477578 - 24477460
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24477578 ccttccctttctttaaggattgaacataataacttaaatatacacaaataggttaatagtgaacaaaagataaattaagattgatccaagataataacaa 24477479  T
Q  141 ttatccatagtaacattaa 159  Q
    |||||||||||||||||||    
T  24477478 ttatccatagtaacattaa 24477460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 4970449 - 4970558
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||||||        | |||||||||||||||||||||||||||||  ||||||||    
T  4970449 ccttcccattctttaaggattgaacagaataacttaaatatacacaaatag--------tgaacaaaagataaattaagattgatccaag--aataacaa 4970538  T
Q  141 ttatccatagtaacattaac 160  Q
    ||||||||||||||||||||    
T  4970539 ttatccatagtaacattaac 4970558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 20337850 - 20337944
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacattaac 160  Q
    ||||||||||| ||||| ||||||||    || ||||| |||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  20337850 aacataataacataaatgtacacaaaa---tttatagtgaacaaaagataaattaagtttggtccaagagaataacaattattcatagtaacattaac 20337944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 3436078 - 3436161
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccata 149  Q
    ||||||||||| ||||| ||||||||    || ||||| |||||||||||||||||| ||| ||||||| ||||| |||||||||||    
T  3436078 aacataataacataaatgtacacaaaa---tttatagtgaacaaaagataaattaagtttggtccaagagaataataattatccata 3436161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 17544044 - 17543926
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17544044 ccttccctttctttaaggattgaacataataacttaaatatacacaaataggttaatagtgaacaaaagataaattaagattgatccaagataataacaa 17543945  T
Q  141 ttatccatagtaacattaa 159  Q
    |||||||||||||||||||    
T  17543944 ttatccatagtaacattaa 17543926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 3410032 - 3410143
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||        | |||||||||||||||||||||||||||| | ||||| ||    
T  3410032 ccttcccattctttaaggattgaacataataacttaaatatacacaaatag--------tgaacaaaagataaattaagattgatccaatagaataataa 3410123  T
Q  141 ttatccatagtaacattaac 160  Q
    ||||||||||||||||||||    
T  3410124 ttatccatagtaacattaac 3410143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 50005451 - 50005368
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccata 149  Q
    ||||||||||| ||||||||||||||    || ||||| ||||||||| |||||||| ||||||||||| ||||||| |||||||||    
T  50005451 aacataataacataaatatacacaaaa---tttatagtgaacaaaagaaaaattaagtttgatccaagagaataacatttatccata 50005368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 16030355 - 16030311
Alignment:
Q  105 aaaagataaattaagattgatccaagataataacaattatccata 149  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||    
T  16030355 aaaagataaattaagtttggtccaagaaaataacaattatccata 16030311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 43746095 - 43746213
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43746095 ccttccctttctttaaggattgaacataataacttaaatatacacaaataggttaatagtgaacaaaagataaattaagattgatccaagataataacaa 43746194  T
Q  141 ttatccatagtaacattaa 159  Q
    |||||||||||||||||||    
T  43746195 ttatccatagtaacattaa 43746213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 27972418 - 27972299
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  27972418 ccttcccattctttaaggattgaacataataacttaaatatacacaaataggctaatagtgaacaaaagataaattaagattgatccaagataataacaa 27972319  T
Q  141 ttatccatagtaacattaac 160  Q
    ||||||||||||||||||||    
T  27972318 ttatccatagtaacattaac 27972299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 33985979 - 33985916
Alignment:
Q  66 ataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaa 129  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||    
T  33985979 ataataacttaaatatacacaaatagactaatagtgaacaaaagataaattaagattgatccaa 33985916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 50737326 - 50737386
Alignment:
Q  96 atagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    ||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||    
T  50737326 atagtgaacaaaagataaattaagtttggtccaagagaataacaattatccatactaacat 50737386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 50775529 - 50775469
Alignment:
Q  96 atagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    ||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||    
T  50775529 atagtgaacaaaagataaattaagtttggtccaagagaataacaattatccatactaacat 50775469  T

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Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 26519750 - 26519631
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||    
T  26519750 ccttcccattctttaaggattgaacataataacttaaatatacacaaataggctaatagtgaacaaaagataaattaagattgatccaagagaataacaa 26519651  T
Q  141 ttatccatagtaacattaac 160  Q
    ||||||||||||||||||||    
T  26519650 ttatccatagtaacattaac 26519631  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 31471175 - 31471294
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaa 140  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  31471175 ccttcccattctttaaggattgaagataataacttaaatatacacaaataggctaatagtgaacaaaagataaattaagattgatccgagagaataacaa 31471274  T
Q  141 ttatccatagtaacattaac 160  Q
    ||||||||||||||||||||    
T  31471275 ttatccatagtaacattaac 31471294  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 20143459 - 20143359
Alignment:
Q  52 tttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccatagt 151  Q
    |||||| |||||||| ||||| ||||||||||||||| ||        | |||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  20143459 tttaaggattgaacaaaataatttaaatatacacaaacag--------tgaacaaaagataaattaagattgatccaagagaataacaattatccataat 20143368  T
Q  152 aacattaac 160  Q
    |||||||||    
T  20143367 aacattaac 20143359  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 22189380 - 22189480
Alignment:
Q  52 tttaagaattgaacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccatagt 151  Q
    |||||| |||||||| ||||| ||||||||||||||| ||        | |||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  22189380 tttaaggattgaacaaaataatttaaatatacacaaacag--------tgaacaaaagataaattaagattgatccaagagaataacaattatccataat 22189471  T
Q  152 aacattaac 160  Q
    |||||||||    
T  22189472 aacattaac 22189480  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 12271574 - 12271657
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccata 149  Q
    ||||||||||| ||||| ||||||||    || ||| | |||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  12271574 aacataataacataaatgtacacaaaa---tttatattgaacaaaagataaattaagtttggtccaagagaataacaattatccata 12271657  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 12076009 - 12076099
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    ||||||||||| ||||| ||||||||    || ||||| ||||||| |||||||||| ||| ||||||| |||||||||||| |||| ||||||    
T  12076009 aacataataacataaatgtacacaaaa---tttatagtgaacaaaacataaattaagtttggtccaagagaataacaattatacatactaacat 12076099  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 11369525 - 11369561
Alignment:
Q  177 ttgtattttttgggggctttcggggagcccggagccc 213  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  11369525 ttgtattttttgcgggctttcgggcagcccggagccc 11369561  T

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Target: scaffold0564 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 10042 - 10155
Alignment:
Q  41 ccttccctttctttaagaattgaacataataacttaaatatacac----aaataggttaatagtaaacaaaagataaattaagattgatccaagataata 136  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    ||||||| ||||||| |||||          | ||||||||||||||||||    
T  10042 ccttcccattctttaaggattgaacataataacttaaatatacacaaataaataggctaatagtgaacaa----------atgattgatccaagataata 10131  T
Q  137 acaattatccatagtaacattaac 160  Q
    ||||||||| ||||||||||||||    
T  10132 acaattatctatagtaacattaac 10155  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 12749770 - 12749658
Alignment:
Q  42 cttccctttctttaagaattgaacataataacttaaatatacaca----aataggttaatagtaaacaaaagataaattaagattgatccaagataataa 137  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    |||||| ||||||| |||||          | |||||||||||||||||||    
T  12749770 cttcccattctttaaggattgaacataataacttaaatatacacaaataaataggctaatagtgaacaa----------atgattgatccaagataataa 12749681  T
Q  138 caattatccatagtaacattaac 160  Q
    |||||||| ||||||||||||||    
T  12749680 caattatctatagtaacattaac 12749658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 45566458 - 45566398
Alignment:
Q  96 atagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  45566458 atagtgaacaaaagataaattaagtttgatccaagagaataacaattatccatactaacat 45566398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 17332004 - 17331944
Alignment:
Q  96 atagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    ||||| |||||||||||||||||| ||| ||||| | ||||||||||||||||| ||||||    
T  17332004 atagtgaacaaaagataaattaagtttggtccaaaaaaataacaattatccatactaacat 17331944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 49228652 - 49228742
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    ||||||||||| ||||| ||||||||    || | ||| ||||||||||||||| || ||| ||||||| |||||||||||| |||| ||||||    
T  49228652 aacataataacataaatgtacacaaaa---tttacagtgaacaaaagataaatttagtttggtccaagagaataacaattattcatactaacat 49228742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 24682484 - 24682530
Alignment:
Q  110 ataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    |||||||||||||||||||||| ||||| |||||| |||| ||||||    
T  24682484 ataaattaagattgatccaagagaataaaaattattcatactaacat 24682530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 48469817 - 48469863
Alignment:
Q  110 ataaattaagattgatccaagataataacaattatccatagtaacat 156  Q
    |||||||||| ||| ||||||| ||||||||||||||||| ||||||    
T  48469817 ataaattaagtttggtccaagagaataacaattatccatactaacat 48469863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 45757186 - 45757222
Alignment:
Q  177 ttgtattttttgggggctttcggggagcccggagccc 213  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  45757186 ttgtattttttgcgggctttcgggcagcccggagccc 45757222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 9471577 - 9471494
Alignment:
Q  63 aacataataacttaaatatacacaaataggttaatagtaaacaaaagataaattaagattgatccaagataataacaattatccata 149  Q
    ||||||||||| ||||| ||||||||    || ||| | |||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  9471577 aacataataacataaatgtacacaaaa---tttataatgaacaaaagataaattaagtttggtccaagagaataacaattatccata 9471494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 17921407 - 17921344
Alignment:
Q  96 atagtaaacaaaagataaattaagattgatccaagataataacaattatccatagtaacattaac 160  Q
    ||||| |||||||||||||| ||  ||| || |||| ||||||||||||||||||||||||||||    
T  17921407 atagttaacaaaagataaatgaaatttggtc-aagagaataacaattatccatagtaacattaac 17921344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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