View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6916_low_2 (Length: 475)

Name: NF6916_low_2
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6916_low_2
NF6916_low_2
[»] chr5 (11 HSPs)
chr5 (31-144)||(3379876-3379988)
chr5 (296-464)||(3368960-3369125)
chr5 (88-165)||(3403224-3403300)
chr5 (370-464)||(3402963-3403057)
chr5 (88-165)||(3401854-3401930)
chr5 (169-242)||(3377823-3377895)
chr5 (88-165)||(3377933-3378009)
chr5 (46-95)||(3369196-3369245)
chr5 (88-145)||(3373740-3373796)
chr5 (46-95)||(3394813-3394862)
chr5 (433-469)||(3374834-3374870)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 3379988 - 3379876
Alignment:
Q  31 tttatctggatcattcttctgcttatgttgttcccttgcaagagaagtaattgccattacctgatacatatcaatccattggaaaagagtaatcagaatt 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||| ||||||||||||||||| |||||||||| ||||||    
T  3379988 tttatctggatcattcttctgcttatgttgttcccttgcaagagaagtaatcactgttacctgacacatatcaatccattgg-aaagagtaattagaatt 3379890  T
Q  131 gcataaacttgtca 144  Q
    | ||||||||||||    
T  3379889 gaataaacttgtca 3379876  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 296 - 464
Target Start/End: Complemental strand, 3369125 - 3368960
Alignment:
Q  296 atgtcaaaaacttattaggctattattagcctttaaatattccatttgattttatagacatatagtttccttcacaggtacttacagttacaagacttgc 395  Q
    ||||||||||| |||||| ||||||   |||| ||||||||  ||||||||||||| || |||  || | ||| ||||||||||||| | || |||||||    
T  3369125 atgtcaaaaacatattagactatta---gcctctaaatattttatttgattttataaacctattattcctttcccaggtacttacagctgcaggacttgc 3369029  T
Q  396 agccaccattggaccagctacgtgaccggcaacaacattaccgtctagatcccctaaagaaacattcat 464  Q
    | |||||| ||||||||||||| ||||  |||||||||| || ||||||||| | ||||||||||||||    
T  3369028 aaccaccaatggaccagctacgcgaccaccaacaacatttccatctagatccacaaaagaaacattcat 3368960  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 3403300 - 3403224
Alignment:
Q  88 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcactgtgtactaattaccacaaa 165  Q
    |||||||||||||||||||||||||||| |||| || | ||||||||||||||||||||  |||||||||||||||||    
T  3403300 tacctgatacatatcaatccattggaaa-gagtgatgataattgcataaacttgtcacttagtactaattaccacaaa 3403224  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 464
Target Start/End: Complemental strand, 3403057 - 3402963
Alignment:
Q  370 caggtacttacagttacaagacttgcagccaccattggaccagctacgtgaccggcaacaacattaccgtctagatcccctaaagaaacattcat 464  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| |||||||||  || | ||||||| | ||||||||| ||||    
T  3403057 caggtacttacatttacaggacttgcagccaccaatggaccagctacgcgaccgccaacaacatgtccatgtagatccaccaaagaaacactcat 3402963  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 3401930 - 3401854
Alignment:
Q  88 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcactgtgtactaattaccacaaa 165  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| | | || ||||||||||    
T  3401930 tacctgatacatatcaatccattggaaa-gagtaatgagaattgcatagacttgtcactgagaattagttaccacaaa 3401854  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 3377895 - 3377823
Alignment:
Q  169 gcattcatttgttacattgtaccaatttctttagcaggagactaaaatatgtttctagatcatcaactttactt 242  Q
    |||| |||||||||||| ||||||||||| |||||||||  |||| | ||||| ||||||||||||||||||||    
T  3377895 gcatacatttgttacatagtaccaatttcgttagcaggaccctaata-atgttactagatcatcaactttactt 3377823  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 3378009 - 3377933
Alignment:
Q  88 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcactgtgtactaattaccacaaa 165  Q
    ||||||||||||||||||||| ||| |||||||||  | ||||||||| ||||||||||| | | || ||||||||||    
T  3378009 tacctgatacatatcaatccactgg-aaagagtaacgaaaattgcatagacttgtcactgagaattagttaccacaaa 3377933  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 3369245 - 3369196
Alignment:
Q  46 cttctgcttatgttgttcccttgcaagagaagtaattgccattacctgat 95  Q
    |||||||| ||||||||| ||||||||| |||||| | ||||||||||||    
T  3369245 cttctgctcatgttgttcacttgcaagaaaagtaactaccattacctgat 3369196  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 3373796 - 3373740
Alignment:
Q  88 tacctgatacatatcaatccattggaaaagagtaatcagaattgcataaacttgtcac 145  Q
    ||||||||||||||||||||||||| |||||||| | ||||||   ||||||||||||    
T  3373796 tacctgatacatatcaatccattgg-aaagagtactgagaattcagtaaacttgtcac 3373740  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 3394862 - 3394813
Alignment:
Q  46 cttctgcttatgttgttcccttgcaagagaagtaattgccattacctgat 95  Q
    |||||||| ||||||||| ||||||||| |||||| | ||||||||||||    
T  3394862 cttctgctcatgttgttcacttgcaagaaaagtaactaccattacctgat 3394813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 469
Target Start/End: Complemental strand, 3374870 - 3374834
Alignment:
Q  433 ttaccgtctagatcccctaaagaaacattcatctcac 469  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  3374870 ttaccgtctagatccgctaaagaaacattcatgtcac 3374834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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