View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6916_low_3 (Length: 371)

Name: NF6916_low_3
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6916_low_3
NF6916_low_3
[»] chr4 (4 HSPs)
chr4 (14-352)||(43609968-43610295)
chr4 (211-352)||(6936103-6936241)
chr4 (196-348)||(1470430-1470579)
chr4 (270-349)||(1790455-1790534)
[»] chr1 (2 HSPs)
chr1 (250-350)||(25141258-25141358)
chr1 (140-222)||(16988891-16988973)
[»] chr6 (1 HSPs)
chr6 (270-349)||(11705246-11705325)
[»] chr7 (1 HSPs)
chr7 (196-343)||(20904333-20904477)
[»] chr2 (4 HSPs)
chr2 (297-350)||(26831975-26832028)
chr2 (178-349)||(30939007-30939175)
chr2 (273-349)||(25850226-25850302)
chr2 (196-285)||(10991102-10991188)
[»] chr8 (2 HSPs)
chr8 (270-349)||(17318781-17318860)
chr8 (318-349)||(17342336-17342367)
[»] chr3 (1 HSPs)
chr3 (295-340)||(9440408-9440453)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 43610295 - 43609968
Alignment:
Q  14 atattgttcgaaaacaagggtaatctatatataaaaaattgcctttctcacatgttttgttttcttaaaaacacatggaaaataaattatgccctcatct 113  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43610295 atattgttcgaaaacaagggtaatctatatataaaaa-ttgcttttctcacatgttttgttttcttaaaaacacatggaaaataaattatgccctcatct 43610197  T
Q  114 accgtcagcaattgtagatagtgcagtctgcattacaaaaccaaaccattttcgatcggtaatcacttgtaattaagaatggcaattctagaggaactaa 213  Q
    |||       ||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  43610196 acc-------attgtagatagtgcagtctgcgttacaaaatcaaaccattttcgttctgtaatcacttgtaattaagaatgtcaattctagaggaactaa 43610104  T
Q  214 aaccaatacatcaactataccaagtcataaaccaatacaacactccataatttgtcatgattcattaacattgcacgaatacgacattatgttaacatta 313  Q
    ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  43610103 aaccaatacatcaactataccaagtcataaac---aacaacactccataatttgtcatgattcatttacattacacgaatacgacattatgttaacatta 43610007  T
Q  314 aatgaatgtttgaaattcaacaaaagtgaagcattaaac 352  Q
    || ||||||||||||||||| |||||||| |||||||||    
T  43610006 aacgaatgtttgaaattcaataaaagtgatgcattaaac 43609968  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 352
Target Start/End: Original strand, 6936103 - 6936241
Alignment:
Q  211 taaaaccaatacatcaactataccaagtcataaaccaatacaacactccataatttgtcatgattcattaacattgcacgaatacgacattatgttaaca 310  Q
    ||||| ||||||||||| ||||||||||||||||| |   ||||| | |||||||| |||||||||||||| |||  |  ||| || ||||| || | ||    
T  6936103 taaaatcaatacatcaattataccaagtcataaacaa---caacattacataatttttcatgattcattaatattaaatcaattcggcattacgtgagca 6936199  T
Q  311 ttaaatgaatgtttgaaattcaacaaaagtgaagcattaaac 352  Q
    ||| | ||||| ||||||||||||||||||||||||||||||    
T  6936200 ttacacgaatgattgaaattcaacaaaagtgaagcattaaac 6936241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 348
Target Start/End: Complemental strand, 1470579 - 1470430
Alignment:
Q  196 caattctagaggaactaaaaccaatacatcaactataccaagtcataaaccaatacaacactccataatttgtcatgattcattaacattgcacgaatac 295  Q
    |||||||||| ||| |||| | |||||| |||||||||||||||||| |  |   ||||| | | |||| | |||| |||||||||||||  |  ||| |    
T  1470579 caattctagatgaagtaaaccgaatacaccaactataccaagtcatagataa---caacattacctaatctttcataattcattaacattaaatcaattc 1470483  T
Q  296 gacattatgttaacattaaatgaatgtttgaaattcaacaaaagtgaagcatt 348  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  1470482 gacattaagttaacattacacgaatgtttgaaattcaacaaaagtgaagcatt 1470430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 1790534 - 1790455
Alignment:
Q  270 atgattcattaacattgcacgaatacgacattatgttaacattaaatgaatgtttgaaattcaacaaaagtgaagcatta 349  Q
    ||||||||||||||||  || || |||||| ||||||||| ||| |  |||||||||||||| |||| |||||| |||||    
T  1790534 atgattcattaacattatacaaagacgacaatatgttaacgttacacaaatgtttgaaattcgacaatagtgaaacatta 1790455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 25141358 - 25141258
Alignment:
Q  250 acaacactccataatttgtcatgattcattaacattgcacgaatacgacattatgttaacattaaatgaatgtttgaaattcaacaaaagtgaagcatta 349  Q
    |||||||| |||||||| |||| |||||||||||||  |  ||| ||||| || |||||||||| | |||||||||||||||||||||||||||||||||    
T  25141358 acaacactacataatttttcataattcattaacattaaatcaattcgacactaagttaacattacacgaatgtttgaaattcaacaaaagtgaagcatta 25141259  T
Q  350 a 350  Q
    |    
T  25141258 a 25141258  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 16988973 - 16988891
Alignment:
Q  140 tctgcattacaaaaccaaaccattttcgatcggtaatcacttgtaattaagaatggcaattctagaggaactaaaaccaatac 222  Q
    ||||||||| ||||||||  |||||||| |  || || ||||||||||||||||| |||| | ||||||| ||||||||||||    
T  16988973 tctgcattataaaaccaagtcattttcggtatgttataacttgtaattaagaatgacaatccaagaggaagtaaaaccaatac 16988891  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 11705325 - 11705246
Alignment:
Q  270 atgattcattaacattgcacgaatacgacattatgttaacattaaatgaatgtttgaaattcaacaaaagtgaagcatta 349  Q
    ||||||||||||||||  |||| |||||||||| |||||| ||| |||||| ||||| ||||||||||| ||||||||||    
T  11705325 atgattcattaacattaaacgactacgacattacgttaacgttacatgaatctttgagattcaacaaaattgaagcatta 11705246  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 343
Target Start/End: Original strand, 20904333 - 20904477
Alignment:
Q  196 caattctagaggaactaaaaccaatacatcaactataccaagtcataaaccaatacaacactccataatttgtcatgattcattaacattgcacgaatac 295  Q
    ||||| ||||||||  |||||||||||| |||||||| ||||||||||     ||||||| | |||||||| |||| |||||||||||||  |  ||| |    
T  20904333 caattttagaggaagaaaaaccaatacaccaactatatcaagtcataagt---tacaacattgcataatttttcataattcattaacattaaatcaattc 20904429  T
Q  296 gacattatgttaacattaaatgaatgtttgaaattcaacaaaagtgaa 343  Q
    ||||||| ||||||| || | ||||  |||||||||| ||||||||||    
T  20904430 gacattacgttaacaatacacgaataattgaaattcagcaaaagtgaa 20904477  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 26831975 - 26832028
Alignment:
Q  297 acattatgttaacattaaatgaatgtttgaaattcaacaaaagtgaagcattaa 350  Q
    |||||| |||||||||| |  |||||||||||||||||||||||||||||||||    
T  26831975 acattacgttaacattacacaaatgtttgaaattcaacaaaagtgaagcattaa 26832028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 349
Target Start/End: Complemental strand, 30939175 - 30939007
Alignment:
Q  178 acttgtaattaagaatggcaattctagaggaactaaaaccaatacatcaactataccaagtcataaaccaatacaacactccataatttgtcatgattca 277  Q
    |||||||||| |||||| |||| | ||||||| ||||| |||||||  |||||||||||||||||| |    || ||| |  ||||| | |||| |||||    
T  30939175 acttgtaatttagaatgacaatcccagaggaagtaaaatcaatacactaactataccaagtcataagc---aaccacattatataatctatcataattca 30939079  T
Q  278 ttaacattgcacgaatacgacattatgttaacattaaatgaatgtttgaaattcaacaaaagtgaagcatta 349  Q
    ||| ||||  |  |||  ||||||| |||||||||| | |||||||||||||| ||||||| |||| |||||    
T  30939078 ttagcattaaatcaatttgacattacgttaacattacacgaatgtttgaaatttaacaaaaatgaaacatta 30939007  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 25850226 - 25850302
Alignment:
Q  273 attcattaacattgcacgaatacgacattatgttaacattaaatgaatgtttgaaattcaacaaaagtgaagcatta 349  Q
    ||||||||||||| ||| ||||||||| || ||||| |||| |  |||||| ||||||| |||||||||||||||||    
T  25850226 attcattaacattacacaaatacgacaatacgttaatattacacaaatgttcgaaattccacaaaagtgaagcatta 25850302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 10991188 - 10991102
Alignment:
Q  196 caattctagaggaactaaaaccaatacatcaactataccaagtcataaaccaatacaacactccataatttgtcatgattcattaacatt 285  Q
    |||||| ||||||| ||||| ||||||| ||||||||||||||||||| |   || |||| | |||||||| |||| |||||||||||||    
T  10991188 caattccagaggaagtaaaaacaatacaccaactataccaagtcataagc---tataacattacataatttttcataattcattaacatt 10991102  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 17318860 - 17318781
Alignment:
Q  270 atgattcattaacattgcacgaatacgacattatgttaacattaaatgaatgtttgaaattcaacaaaagtgaagcatta 349  Q
    |||||||||||||||| ||| |||  || | || |||||| ||| |  ||||||||||||||||||||||||||||||||    
T  17318860 atgattcattaacattacacaaatgtgaaaatacgttaacgttacacaaatgtttgaaattcaacaaaagtgaagcatta 17318781  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 349
Target Start/End: Complemental strand, 17342367 - 17342336
Alignment:
Q  318 aatgtttgaaattcaacaaaagtgaagcatta 349  Q
    ||||||||||||||||||||||||||||||||    
T  17342367 aatgtttgaaattcaacaaaagtgaagcatta 17342336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 9440453 - 9440408
Alignment:
Q  295 cgacattatgttaacattaaatgaatgtttgaaattcaacaaaagt 340  Q
    |||||||| ||||| |||| |||| |||||||||||||||||||||    
T  9440453 cgacattacgttaaaattacatgattgtttgaaattcaacaaaagt 9440408  T

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