View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6916_low_5 (Length: 315)
Name: NF6916_low_5
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6916_low_5 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 31563109 - 31562817
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31563109 |
aaatactgcacaacatacaaagccaatgatatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
31563010 |
T |
|
| Q |
117 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31563009 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
31562910 |
T |
|
| Q |
217 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccaccatttcttctcac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31562909 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccaccatttgttctcac |
31562817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 290
Target Start/End: Original strand, 33262357 - 33262616
Alignment:
| Q |
25 |
cacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttgatccaatt |
124 |
Q |
| |
|
||||||||| |||||||||| ||| |||| |||| ||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
33262357 |
cacaacatagaaagccaatgatattattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattgttgatccaact |
33262456 |
T |
|
| Q |
125 |
cggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatgaaaatgtc |
224 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||||||||||| | ||||||||| ||| | ||||| | ||||||||||| | |||||||||||||| |
|
|
| T |
33262457 |
tggtatttcatttcctggactaacaatttgaaactcatccaaataagtagggtaggattgttggtatgcttgaatgaattgtgtcgtccatgaaaatgtc |
33262556 |
T |
|
| Q |
225 |
atgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgta |
290 |
Q |
| |
|
||||| |||||| | |||||||||| ||||||| |||||||| |||||||||||||||||| |
|
|
| T |
33262557 |
atgctactgcaacgttccctctcac------ccaattttggacagttgaaaatgaccaatcctgta |
33262616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 33387877 - 33388109
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
116 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| | |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
33387877 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
33387976 |
T |
|
| Q |
117 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
216 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||| |||| | ||| |||||||||||||||| ||| | | ||||||||| ||||||| |||||||| |
|
|
| T |
33387977 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtcggtttgccttaataaattgtgtcatccatg |
33388076 |
T |
|
| Q |
217 |
aaaatgtcatgctcctgcaatgctccctctcac |
249 |
Q |
| |
|
||||||||||||| |||||| |||||| |||| |
|
|
| T |
33388077 |
aaaatgtcatgctactgcaacactccctatcac |
33388109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 55 - 290
Target Start/End: Original strand, 33271556 - 33271782
Alignment:
| Q |
55 |
tattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttgatccaattcggtatttcacttcctggaacaacaatatg |
154 |
Q |
| |
|
|||| |||||||||| || |||||| ||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||| | |||||| |
|
|
| T |
33271556 |
tattatcatgcatagcagaagagaattctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctggagttataatatg |
33271655 |
T |
|
| Q |
155 |
aaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctca |
254 |
Q |
| |
|
|||||||| |||| || || || || | |||| ||||||||||| ||||||||||||||||| ||| |||||| | |||||||||| ||| |
|
|
| T |
33271656 |
aaactcattcaaa---------taagattgcgggtttgccataatgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtca |
33271746 |
T |
|
| Q |
255 |
gccaatttcggacagttaaaaatgaccaatcctgta |
290 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| |
|
|
| T |
33271747 |
gccaattttggacagttgaaaatgaccaatcctgta |
33271782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 33644825 - 33644560
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
116 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| |||| |||||||||||||| |||||| |||||| ||||||||| ||||| || ||||||||| |
|
|
| T |
33644825 |
aaatactgcacaacatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacactttgattgttg |
33644726 |
T |
|
| Q |
117 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
216 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||| ||| | ||| || |||| |||||||| ||| | | ||||| |||||||||| |||||||| |
|
|
| T |
33644725 |
atccaacttggtatttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatg |
33644626 |
T |
|
| Q |
217 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctg |
288 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| ||||||| | |||||| |||||||||||||||| |
|
|
| T |
33644625 |
aaaatgtcatgctcctgcaacgttccctctcac------ccaattttgaacagttgaaaatgaccaatcctg |
33644560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 33304207 - 33304475
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
116 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||| |||| |||||||||||||| |||||| |||||| ||||||||||||||| ||| | ||||||| |
|
|
| T |
33304207 |
aaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttg |
33304306 |
T |
|
| Q |
117 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
216 |
Q |
| |
|
|||||| | ||||||||| |||||||| |||||| |||| | ||| || | | ||||||||| |||| | ||||| ||||||||||| || ||||| |
|
|
| T |
33304307 |
atccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatg |
33304406 |
T |
|
| Q |
217 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtag |
291 |
Q |
| |
|
||||||||||||| |||||| | |||||||||| ||||||| |||||||| ||||||| ||||||||||| |
|
|
| T |
33304407 |
aaaatgtcatgctactgcaacgttccctctcac------ccaattttggacagttgaaaatgaacaatcctgtag |
33304475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 28870446 - 28870242
Alignment:
| Q |
25 |
cacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttgatccaatt |
124 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||||||||| ||| |||||| |||||| |||||||| |||||||||| |||||||| |||||| | |
|
|
| T |
28870446 |
cacaacatacaaagccaatgatattattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaact |
28870347 |
T |
|
| Q |
125 |
cggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatgaaaatgtc |
224 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| ||||||||||| || ||||||| ||| | |||||| |||||||||| |||||||||||||| | |
|
|
| T |
28870346 |
tggtatttcacttcctggagtaacaatattaaacgcatccaaatagacaaggtaggattgtcggtatgcccgaatgaattgtttcatccatgaaaatgcc |
28870247 |
T |
|
| Q |
225 |
atgct |
229 |
Q |
| |
|
||||| |
|
|
| T |
28870246 |
atgct |
28870242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 33285321 - 33285552
Alignment:
| Q |
21 |
actgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttgatcc |
120 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| |||||||||||||| |||||| ||||||||||||||| ||||| ||| ||||| || |||| |
|
|
| T |
33285321 |
actgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagatctgtctattggtattgaactacccacgctctgattattaatcc |
33285420 |
T |
|
| Q |
121 |
aattcggtatttcacttcctggaacaacaatatgaaactcatccaaatag---gcagggtaggagtgtggatatgccttaatgaattgtgccatccatga |
217 |
Q |
| |
|
|| | |||||||||||||||||| ||||||||||| | | || || || |||||||| ||||| | ||||||| ||||||||| ||||||||| |
|
|
| T |
33285421 |
aacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccatga |
33285520 |
T |
|
| Q |
218 |
aaatgtcatgctcctgcaatgctccctctcac |
249 |
Q |
| |
|
||||| |||||| |||||| | ||||| |||| |
|
|
| T |
33285521 |
aaatgccatgctactgcaacgttccctttcac |
33285552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 9166485 - 9166609
Alignment:
| Q |
18 |
aatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||| |||||||||||||| ||||| | ||||||||||| ||| || ||| ||| ||||||||| |
|
|
| T |
9166485 |
aatactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacgctccgattgttga |
9166584 |
T |
|
| Q |
118 |
tccaattcggtatttcacttcctgg |
142 |
Q |
| |
|
||||| | ||||||||| ||||||| |
|
|
| T |
9166585 |
tccaacttggtatttcaattcctgg |
9166609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 33398795 - 33398929
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatgg-tatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgtt |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||| | | |||| |||| |||||||||| |||||| | |||||| ||||||||||||||| | |||||||| |
|
|
| T |
33398795 |
aaatactgcacaacatacaaagt-aatggctctgattgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactgattgtt |
33398893 |
T |
|
| Q |
116 |
gatccaattcggtatttcacttcctggaacaacaat |
151 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
33398894 |
gatccaacttggtatttcacttcctggaataacaat |
33398929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 33057301 - 33057554
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
116 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||| |||| |||||||||| || |||||| ||||||| |||||||| |||||| || ||||||||| |
|
|
| T |
33057301 |
aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagatcggtctattgctattgaataacccatcctctgattgttg |
33057400 |
T |
|
| Q |
117 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
216 |
Q |
| |
|
|||||| | |||||||||||||||||| ||| || |||| |||| | || |||| |||| | |||||||||||||||| ||||||| |
|
|
| T |
33057401 |
atccaacttggtatttcacttcctggattaactatttgaatctca---------gaag---aggaacgtgggtttgccttaatgaattgtttcatccata |
33057488 |
T |
|
| Q |
217 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctg |
288 |
Q |
| |
|
||| |||||||||||||||||| |||||||||| ||||||| |||||||| ||||||| |||||||| |
|
|
| T |
33057489 |
aaagtgtcatgctcctgcaatgttccctctcac------ccaattttggacagttgaaaatgagcaatcctg |
33057554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 33409709 - 33409827
Alignment:
| Q |
25 |
cacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttgatccaatt |
124 |
Q |
| |
|
|||||| |||||||||||| ||| |||| ||||||||| ||| |||||| || |||| ||||||| |||||| ||| ||||||||||||||| | |
|
|
| T |
33409709 |
cacaacttacaaagccaataatattattgttattgtcatttataacaggagattcatcaattgatattgaagcacccacgctctgattgttgatccaact |
33409808 |
T |
|
| Q |
125 |
cggtatttcacttcctgga |
143 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33409809 |
tggtatttcacttcctgga |
33409827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 288
Target Start/End: Original strand, 33398957 - 33399042
Alignment:
| Q |
197 |
aatgaattgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctg |
288 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||| | |||||||||| ||||||| | |||||| |||||||||||||||| |
|
|
| T |
33398957 |
aatgaattgtatcatccatgaaaatgtcatgctactgcaacgttccctctcac------ccaattttgaacagttgaaaatgaccaatcctg |
33399042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 33409869 - 33409926
Alignment:
| Q |
191 |
tgccttaatgaattgtgccatccatgaaaatgtcatgctcctgcaatgctccctctca |
248 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||| ||||| |||||| | ||||||||| |
|
|
| T |
33409869 |
tgcctgaatgaaatgtgccatccatgaaattgtgatgctactgcaacgttccctctca |
33409926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 33358656 - 33358704
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgc |
65 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||| ||||||||||| |
|
|
| T |
33358656 |
aaatactgcacaacatacaaaaccaatgacattattgttattgtcatgc |
33358704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 367 - 639
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
116 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||| |||||||||| ||| |||||| |||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
367 |
aaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttg |
466 |
T |
|
| Q |
117 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
216 |
Q |
| |
|
||||| | |||||||||||||||||| |||||| |||| ||||| |||||| | | |||||| ||| | | ||||| |||||||||| |||||||| |
|
|
| T |
467 |
atccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatg |
566 |
T |
|
| Q |
217 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtcca |
295 |
Q |
| |
|
||||||| ||||| || ||| |||||||||| ||||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
567 |
aaaatgttatgctactacaacattccctctcac------ccaattttggacagttgaaaatgaccaatcctttagtcca |
639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 6113 - 6385
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
116 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| ||| |||||||||| ||| |||||| |||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
6113 |
aaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttg |
6212 |
T |
|
| Q |
117 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
216 |
Q |
| |
|
||||| | |||||||||||||||||| |||||| |||| ||||| |||||| | | |||||| ||| | | ||||| |||||||||| |||||||| |
|
|
| T |
6213 |
atccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatg |
6312 |
T |
|
| Q |
217 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtcca |
295 |
Q |
| |
|
||||||| ||||| || ||| |||||||||| ||||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
6313 |
aaaatgttatgctactacaacattccctctcac------ccaattttggacagttgaaaatgaccaatcctttagtcca |
6385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 31499340 - 31499201
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| |||||||||| ||| ||||| | |||||| |||||||||||||| |||| ||||| || |
|
|
| T |
31499340 |
aaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattctta |
31499241 |
T |
|
| Q |
117 |
atccaattcggtatttcacttcctggaacaacaatatgaa |
156 |
Q |
| |
|
| |||| | | |||||||||||||||| ||||||||||| |
|
|
| T |
31499240 |
aaccaacttgatatttcacttcctggagtaacaatatgaa |
31499201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 31472835 - 31472625
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
116 |
Q |
| |
|
||||||| ||||||||| | | |||||| ||| |||| |||||||||||||| ||||| | |||| | |||| ||||||||| || | ||||||||| |
|
|
| T |
31472835 |
aaatactacacaacatatacaaccaatgatattattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttgttctgattgttg |
31472736 |
T |
|
| Q |
117 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
216 |
Q |
| |
|
| |||| | |||||||||||||||||| |||||| |||| ||| || || ||||| |||| ||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
31472735 |
aaccaacttggtatttcacttcctggagtaacaatctgaattatatcataacagtcagggaaggattgtggatttgcctgaatgagttgtatcatccatg |
31472636 |
T |
|
| Q |
217 |
aaaatgtcatg |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
31472635 |
aaaatgtcatg |
31472625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 31479293 - 31479081
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
116 |
Q |
| |
|
||||||| ||||||||||| |||||| | ||| |||| ||||||| |||||| ||||| | |||||| ||||| ||| |||| |||| ||||||||| |
|
|
| T |
31479293 |
aaatactacacaacatacacagccaacgatattattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgattgttg |
31479194 |
T |
|
| Q |
117 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
216 |
Q |
| |
|
| |||| | || |||||||| |||||| |||||| |||| | ||| | || || || || | ||| | | ||||| |||||||||| |||||||| |
|
|
| T |
31479193 |
aaccaacttggcatttcactacctggagtaacaatttgaaccctatcagaggagtcatgggagaattgtcggtttgcctgaatgaattgtatcatccatg |
31479094 |
T |
|
| Q |
217 |
aaaatgtcatgct |
229 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31479093 |
aaaatgtcatgct |
31479081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 31157018 - 31157080
Alignment:
| Q |
89 |
tattgaatcacccatgctatgattgttgatccaattcggtatttcacttcctggaacaacaat |
151 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||| | |||||||||||||| |||| |||||| |
|
|
| T |
31157018 |
tattgaatcaccctcgctctgattgttgaaccaaattggtatttcacttccaggaataacaat |
31157080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 31157172 - 31157213
Alignment:
| Q |
246 |
tcactctcagccaatttcggacagttaaaaatgaccaatcct |
287 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
31157172 |
tcactctcacccaatttaggacagttgaaaatgaccaatcct |
31157213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 31504317 - 31504269
Alignment:
| Q |
178 |
aggagtgtggatatgccttaatgaattgtgccatccatgaaaatgtcat |
226 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
31504317 |
aggattgtgggtttgccttaatgaattgtatcatccatgaaaatgtcat |
31504269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 17441147 - 17441014
Alignment:
| Q |
17 |
aaatactgcacaacatacaaagccaatggtatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
116 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| ||||||||||| || |||||| |||||| |||||||||||||| ||| | ||||||| |
|
|
| T |
17441147 |
aaatactgcacaacatacaaaaccaatgatat------tattgtcatgcttaataggagattggtctattcttattgaatcacccacgctcttattgttg |
17441054 |
T |
|
| Q |
117 |
atccaattcggtatttcacttcctggaacaacaatatgaa |
156 |
Q |
| |
|
|||||| | |||||||| ||||||||| ||||||||||| |
|
|
| T |
17441053 |
atccaacttggtatttcgcttcctggactaacaatatgaa |
17441014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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