View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6916_low_8 (Length: 252)

Name: NF6916_low_8
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6916_low_8
NF6916_low_8
[»] chr4 (1 HSPs)
chr4 (18-234)||(13893588-13893805)
[»] chr1 (2 HSPs)
chr1 (18-234)||(44306152-44306368)
chr1 (124-234)||(22893825-22893935)
[»] chr2 (2 HSPs)
chr2 (37-234)||(6049935-6050125)
chr2 (45-234)||(26661530-26661720)
[»] chr8 (2 HSPs)
chr8 (87-234)||(32717779-32717924)
chr8 (87-234)||(10637670-10637815)
[»] scaffold0586 (1 HSPs)
scaffold0586 (87-234)||(9615-9760)
[»] chr6 (2 HSPs)
chr6 (124-234)||(19701182-19701292)
chr6 (45-234)||(21481448-21481638)
[»] chr7 (3 HSPs)
chr7 (64-234)||(33430156-33430332)
chr7 (132-234)||(13331531-13331633)
chr7 (132-234)||(13342446-13342548)
[»] chr5 (1 HSPs)
chr5 (132-234)||(5672002-5672104)
[»] chr3 (1 HSPs)
chr3 (132-234)||(15761973-15762075)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 13893588 - 13893805
Alignment:
Q  18 gttactagcttaccaaaataaaggtgggttaaatttctcaaaacaggaacaaaaatgagttgagagaaggcaataagcaacaacagtagac-aaaaaata 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  13893588 gttactagcttaccaaaacaaaggtgggttaaatttctcaaaacaggaacaaaaatgagttgatagaaggcaataagcaacaacagtagaccaaaaaata 13893687  T
Q  117 atgatataatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaa 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13893688 atgagataatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaa 13893787  T
Q  217 aatagcaagcagttgatg 234  Q
    |||| |||||||||||||    
T  13893788 aataacaagcagttgatg 13893805  T

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Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 44306368 - 44306152
Alignment:
Q  18 gttactagcttaccaaaataaaggtgggttaaatttctcaaaacaggaacaaaaatgagttgagagaaggcaataagcaacaacagtaga-caaaaaata 116  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  44306368 gttactagcttaccaaaacaaaggtgggttaaatttctcaaaaaaggaacaaaaatgagttgagagaaggcaataagcaacaacagtacaccaaaaaata 44306269  T
Q  117 atgatataatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaa 216  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44306268 atgagataatgatatcaatgaccaaatctatgttgagtaatggaagaattgaaaag-aatttgatggtaccttgaagagaagagtgaaatccagaaccaa 44306170  T
Q  217 aatagcaagcagttgatg 234  Q
    ||||||||||||||||||    
T  44306169 aatagcaagcagttgatg 44306152  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 22893935 - 22893825
Alignment:
Q  124 aatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagca 223  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||||||||| |||  ||| ||||    
T  22893935 aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaaacagca 22893836  T
Q  224 agcagttgatg 234  Q
    |||||||||||    
T  22893835 agcagttgatg 22893825  T

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Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 6050125 - 6049935
Alignment:
Q  37 aaaggtgggttaaatttctcaaaacaggaacaaaaatgagttgagagaaggcaataagcaacaacagtagacaaaaaataatgatataatgatatcaatc 136  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||       |||||||||||||||    
T  6050125 aaaggtgggttaaatttctcaaaacaggaacacaaatgagttgagagaaggcaataagcaacaacagtagaccaaaaa-------ataatgatatcaatc 6050033  T
Q  137 accaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6050032 accaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatg 6049935  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 234
Target Start/End: Complemental strand, 26661720 - 26661530
Alignment:
Q  45 gttaaatttctca--aaacaggaacaaaaatgagttgagagaaggcaataagcaacaa-cagtagacaaaaaataatgatataatgatatcaatcaccaa 141  Q
    |||||||||||||  ||| | ||||||||||| ||||||| || |||||||||||||| ||| ||||||||||  | || | | ||||||||||||||||    
T  26661720 gttaaatttctcataaaaaatgaacaaaaatgggttgagacaaagcaataagcaacaaacagcagacaaaaaaaca-gaga-attgatatcaatcaccaa 26661623  T
Q  142 atctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatg 234  Q
    |||||||||||||||||||||||||   | |||||| |||| ||||||||| |||||||||||||| | |||| || | ||||||||||||||    
T  26661622 atctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatg 26661530  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 234
Target Start/End: Original strand, 32717779 - 32717924
Alignment:
Q  87 gcaataagcaacaacagtagacaaaaaataatgatataatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtac 186  Q
    ||||||||||||| ||| ||||||||||  | || | |||||||| |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  32717779 gcaataagcaacatcagaagacaaaaaaaca-gaga-aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtac 32717876  T
Q  187 cttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatg 234  Q
    ||||||||||||||||||||||| |||  ||| |||||||||||||||    
T  32717877 cttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatg 32717924  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 234
Target Start/End: Complemental strand, 10637815 - 10637670
Alignment:
Q  87 gcaataagcaacaacagtagacaaaaaataatgatataatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtac 186  Q
    ||||||||||||| ||| ||||||||||  | || | |||||||| |||||||||||||||||||||||||||||||||| ||| |||||| |||| |||    
T  10637815 gcaataagcaacatcagaagacaaaaaaaca-gaga-aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgatac 10637718  T
Q  187 cttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatg 234  Q
    ||||||||||||||||||||||| |||  ||| |||||||||||||||    
T  10637717 cttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatg 10637670  T

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Target: scaffold0586 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 234
Target Start/End: Complemental strand, 9760 - 9615
Alignment:
Q  87 gcaataagcaacaacagtagacaaaaaataatgatataatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtac 186  Q
    ||||||||||||| ||| ||||||||||  | || | |||||||| |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  9760 gcaataagcaacatcagaagacaaaaaaaca-gaga-aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtac 9663  T
Q  187 cttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatg 234  Q
    ||||||||||||||||||||||| |||  ||| | |||||||||||||    
T  9662 cttgaagagaagagtgaaatccaaaactcaaacaacaagcagttgatg 9615  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 19701292 - 19701182
Alignment:
Q  124 aatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagca 223  Q
    |||||||| ||||| |||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||||||||||| |||  ||||||||    
T  19701292 aatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaaatagca 19701193  T
Q  224 agcagttgatg 234  Q
    |||||||||||    
T  19701192 agcagttgatg 19701182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 234
Target Start/End: Complemental strand, 21481638 - 21481448
Alignment:
Q  45 gttaaatttctca--aaacaggaacaaaaatgagttgagagaaggcaataagcaacaa-cagtagacaaaaaataatgatataatgatatcaatcaccaa 141  Q
    |||||||||||||  ||| | ||||||||||| ||||||| || |||||||||||||| ||| ||||||||||  | || | | ||||||||||||||||    
T  21481638 gttaaatttctcataaaaaatgaacaaaaatgggttgagacaaagcaataagcaacaaacagcagacaaaaaaaca-gaga-attgatatcaatcaccaa 21481541  T
Q  142 atctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatg 234  Q
    |||||||||||||||||||||||||   | |||||| |||| ||||||||| |||||||||||||| | |||| || | ||||| ||||||||    
T  21481540 atctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaattggcaagtagttgatg 21481448  T

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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 64 - 234
Target Start/End: Original strand, 33430156 - 33430332
Alignment:
Q  64 gaacaaaaatgagttgagagaaggcaataagcaacaacagtagac-----aaaaaataatgatataatgatatcaatcaccaaatctatgttgagtaatg 158  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||     |||||| ||||| | |||||| ||||||| |||||||| |||||||||||    
T  33430156 gaacaaaaatgggttgagagaaggcaataagcaacaacaatagacaataaaaaaaacaatgagagaatgatgtcaatcatcaaatctacgttgagtaatg 33430255  T
Q  159 gaa-gaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatg 234  Q
    ||| || |  |||| ||||| ||||||||||||||||||| |||||||| || || | ||||||||| || ||||||    
T  33430256 gaacgattaaaaaaaaaattagatggtaccttgaagagaatagtgaaattcaaaatccaaatagcaaacacttgatg 33430332  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 13331531 - 13331633
Alignment:
Q  132 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttg 231  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||| | |||  ||  ||||||||||||    
T  13331531 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13331630  T
Q  232 atg 234  Q
    |||    
T  13331631 atg 13331633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 13342446 - 13342548
Alignment:
Q  132 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttg 231  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||| | |||  ||  ||||||||||||    
T  13342446 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13342545  T
Q  232 atg 234  Q
    |||    
T  13342546 atg 13342548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 5672002 - 5672104
Alignment:
Q  132 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttg 231  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||| | |||  ||  ||||||||||||    
T  5672002 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 5672101  T
Q  232 atg 234  Q
    |||    
T  5672102 atg 5672104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 15761973 - 15762075
Alignment:
Q  132 caatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttg 231  Q
    |||||||||||||||||||||||||| |||||||||| | |||||| |||||||| ||||| |||| ||||||||| | | ||||| ||||||  |||||    
T  15761973 caatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttg 15762072  T
Q  232 atg 234  Q
    |||    
T  15762073 atg 15762075  T

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