View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6916_low_9 (Length: 248)
Name: NF6916_low_9
Description: NF6916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6916_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 39257567 - 39257780
Alignment:
| Q |
16 |
atgctagaaaaccaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggcct |
115 |
Q |
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| T |
39257567 |
atgctagaaaaccaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggcct |
39257666 |
T |
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| Q |
116 |
tggttccaccattgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatggtgtcgccttaaggcaattctcaccaacgatgccttg |
215 |
Q |
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| T |
39257667 |
tggttccaccattgcctagagaaatggtgtataaggcaaggaagaaaacacccttttgcaatggtgtcgccttgaggcaattctcaccaacgatgccttc |
39257766 |
T |
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| Q |
216 |
tgtacatggtggtg |
229 |
Q |
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|||||||||||||| |
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| T |
39257767 |
tgtacatggtggtg |
39257780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 39239760 - 39239925
Alignment:
| Q |
16 |
atgctagaaaaccaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggcct |
115 |
Q |
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|||||| |||||||||||||||| || || | ||||| | || ||||||||| |||||| || ||||||||||| ||||||| |||||||||||||| | |
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| T |
39239760 |
atgctaaaaaaccaccaattgaagaaggacaacttatcggatttctctttgggatcaaagtcatcaaattggtcagctcccatagtagaaatgttgggtt |
39239859 |
T |
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| Q |
116 |
tggttccaccattgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatggtg |
181 |
Q |
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| T |
39239860 |
tggttccacctgtgcctaaaacaattatgtacaaggcaaggaagaaaatacccttttgcaatggtg |
39239925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 39177878 - 39178033
Alignment:
| Q |
23 |
aaaaccaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggccttggttcc |
122 |
Q |
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|||||||||||||||| ||||| ||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||||||| | |||||| || |
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| T |
39177878 |
aaaaccaccaattgaagaaagaaagcttataggatctctctttgggctcgaactcgtcaaattggtctgctcccattgtagaaatgtttggcttggtccc |
39177977 |
T |
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| Q |
123 |
accattgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatg |
178 |
Q |
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| T |
39177978 |
ccctgtgcctacggcaatgatatacagggcaaggaagaaaatacccttttgcaatg |
39178033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 39216343 - 39216498
Alignment:
| Q |
26 |
accaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggccttggttccacc |
125 |
Q |
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||||||||||||| || || || |||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||| || |
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| T |
39216343 |
accaccaattgaagaaggaaagtttataggtgctctctttgggctcgaactcgtcaaattggtctgctcccattgtagaaatgttgggcttggttcctcc |
39216442 |
T |
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| Q |
126 |
attgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatggtg |
181 |
Q |
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| |||| || |||| |||| | ||||||||||||||||||| |||||||||||| |
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| T |
39216443 |
tgttcctacagcaatgatgtacagggcaaggaagaaaatacccctttgcaatggtg |
39216498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 39223951 - 39224121
Alignment:
| Q |
16 |
atgctagaaaaccaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggcct |
115 |
Q |
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|||||| |||||||||||||||| || || ||||||||| |||||||| | || ||||||||||||||||||||||||| ||||||||||||| || |
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| T |
39223951 |
atgctaaaaaaccaccaattgaagaaggaaagcttataggtcctctctttaggctcgaactcgtcaaattggtctgctcccattgtagaaatgttgggct |
39224050 |
T |
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| Q |
116 |
tggttccaccattgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatggtgtcgcc |
186 |
Q |
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||||||| || | |||| || || | |||||| |||||||||||| | |||| ||||||| |||| |||| |
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| T |
39224051 |
tggttcctcctgttcctacagcaacgatgtatagggcaaggaagaatacacccctttgcaagggtgacgcc |
39224121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 39194644 - 39194799
Alignment:
| Q |
26 |
accaccaattgaaaaaagagagcttatagaatctctctttggtatcaaactcgtcaaattggtctgctcccagagtagaaatgttggccttggttccacc |
125 |
Q |
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||||||||||||| || || || |||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||| | ||| ||||| || |
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| T |
39194644 |
accaccaattgaagaaggaaagtttataggtcctctctttgggctcgaactcgtcaaattggtctgctcccatcgtagaaatgttaggctttgttcctcc |
39194743 |
T |
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| Q |
126 |
attgcctagagaaatggtgtataaggcaaggaagaaaatacccttttgcaatggtg |
181 |
Q |
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| T |
39194744 |
tgttcctacagcaatgatgtacagggctaggaagaaaatacccctttgcaatggtg |
39194799 |
T |
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