View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6917_high_14 (Length: 324)

Name: NF6917_high_14
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6917_high_14
NF6917_high_14
[»] chr7 (6 HSPs)
chr7 (1-317)||(22862710-22863026)
chr7 (1-317)||(47556232-47556548)
chr7 (64-254)||(591117-591307)
chr7 (1-267)||(20695029-20695295)
chr7 (1-267)||(20700507-20700773)
chr7 (46-254)||(12124573-12124781)
[»] chr8 (1 HSPs)
chr8 (1-317)||(10798644-10798960)
[»] chr6 (2 HSPs)
chr6 (1-317)||(5388488-5388804)
chr6 (170-227)||(2897316-2897373)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-230)||(221767-221996)
[»] scaffold0032 (1 HSPs)
scaffold0032 (64-135)||(50126-50197)
[»] chr4 (2 HSPs)
chr4 (1-135)||(17823927-17824061)
chr4 (94-311)||(15646136-15646353)
[»] chr3 (3 HSPs)
chr3 (44-254)||(23824553-23824763)
chr3 (46-227)||(17150864-17151045)
chr3 (64-224)||(3517690-3517850)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 22863026 - 22862710
Alignment:
1 ttaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggag 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
22863026 ttaaaatcaccaagaacacaccaagccgcttccccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaagaag 22862927  T
101 cataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaac 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||    
22862926 cataaatattcgccaaacagaacacctcattatttgttacaaaggagcctttaacaatcaaacaattatcaatatttactgacaaccagacatccaacac 22862827  T
201 agacggatcccacaccgtaataatacctcccgaagctccgactgaagctttaaatgagtaagccatcaaatcagccccccataaggagtgacacaaaaac 300  Q
    ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||    
22862826 agaaggatcccacaccgtaataatacctccagaagcaccgactgaagctttaaaggaataagccatcaaatcagccccccataaggagcgacacaaaaac 22862727  T
301 tcatccaccaccaccaa 317  Q
    |||||||||||| ||||    
22862726 tcatccaccacctccaa 22862710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 47556232 - 47556548
Alignment:
1 ttaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggag 100  Q
    ||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47556232 ttaaagtcaccaagaacacaccacaccgcttccccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggag 47556331  T
101 cataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaac 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||||||| ||    
47556332 cataaatattcgccaaacagaacacctcattatttgctacaaaggagcctttaacaatcaaacaattagcaatatttactgacaaccagacatccaacac 47556431  T
201 agacggatcccacaccgtaataatacctcccgaagctccgactgaagctttaaatgagtaagccatcaaatcagccccccataaggagtgacacaaaaac 300  Q
    ||| |||||||||| ||| ||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||  |||||||||||    
47556432 agaaggatcccacaacgtgataatacctccagaagcaccgactgaagctttaaaggaataagccatcaaatcagccccccataaggaacgacacaaaaac 47556531  T
301 tcatccaccaccaccaa 317  Q
    |||||||||||| ||||    
47556532 tcatccaccacctccaa 47556548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 254
Target Start/End: Original strand, 591117 - 591307
Alignment:
64 tcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaac 163  Q
    |||||||||| ||||||||||||| ||| | ||||||||||||| || |||||||| ||||  ||||| |||  || ||| || || || |  ||||| |    
591117 tcccacaacatctgtcgccccctaatattagaaggagcataaatgtttgccaaacaaaacatgtcattgttttttaaaaacgacccctttatcatcaagc 591216  T
164 aataatcaatatttactgacaaccaaacatccaaaacagacggatcccacaccgtaataatacctcccgaagctccgactgaagctttaaa 254  Q
    |||   |||||||||| | || |||||||||||  |||   ||||||||||||||||||||||| || || || || ||||||| ||||||    
591217 aatttgcaatatttacagtcatccaaacatccagcacactaggatcccacaccgtaataataccaccagacgcaccaactgaagatttaaa 591307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 20695295 - 20695029
Alignment:
1 ttaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggag 100  Q
    |||||||||||||||| ||||||||| |||||  ||||||   ||| ||||||||| ||   |||||||||  | || ||||||||| | |||||||| |    
20695295 ttaaaatcaccaagaatacaccaagcagcttcatcatgtacctgaatcaaattagataacacatcccacaaatcttgccgccccctattgtcacaagggg 20695196  T
101 cataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaac 200  Q
    ||||  |||| |||||||| ||||  ||| |||||  ||  ||    ||||||||||||||||||| | ||||||| || | || |||||||||||| ||    
20695195 cataggtattagccaaacaaaacaattcactattttttaagaacctccctttaacaatcaaacaattaacaatattcaccgtcacccaaacatccaacac 20695096  T
201 agacggatcccacaccgtaataatacctcccgaagctccgactgaagctttaaatgagtaagccatc 267  Q
    |   |  |||||||| ||||||||||| || || || || ||||||| |||||| ||  ||||||||    
20695095 actagagtcccacactgtaataataccaccagacgcaccaactgaaggtttaaaagaaaaagccatc 20695029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 20700773 - 20700507
Alignment:
1 ttaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggag 100  Q
    |||||||||||||||| ||||||||| |||||  ||||||   ||| ||||||||| ||   |||||||||  | || ||||||||| | |||||||| |    
20700773 ttaaaatcaccaagaatacaccaagcagcttcatcatgtacctgaatcaaattagataacacatcccacaaatcttgccgccccctattgtcacaagggg 20700674  T
101 cataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaac 200  Q
    ||||  |||| |||||||| ||||  ||| |||||  ||  ||    ||||||||||||||||||| | ||||||| || | || |||||||||||| ||    
20700673 cataggtattagccaaacaaaacaattcactattttttaagaacctccctttaacaatcaaacaattaacaatattcaccgtcacccaaacatccaacac 20700574  T
201 agacggatcccacaccgtaataatacctcccgaagctccgactgaagctttaaatgagtaagccatc 267  Q
    |   |  |||||||| ||||||||||| || || || || ||||||| |||||| ||  ||||||||    
20700573 actagagtcccacactgtaataataccaccagacgcaccaactgaaggtttaaaagaaaaagccatc 20700507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 254
Target Start/End: Original strand, 12124573 - 12124781
Alignment:
46 aacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattatttgatacaaagg 145  Q
    ||||||||||| | ||  |||||||| | ||| ||||||||| |||  |||||||||||||||||  ||||||| ||||  |||||||||   | ||| |    
12124573 aacaaattagagatagcttcccacaaaagctggcgccccctattattgcaaggagcataaatatttaccaaacaaaacatttcattatttttaataaacg 12124672  T
146 aacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaacagacggatcccacaccgtaataatacctcccgaagctccgactga 245  Q
    | || || |  ||||||||||    ||| ||||| | || |||||||||||| |||   |||||||||||||||||||| || || || || || |||||    
12124673 accccttgatcatcaaacaatttgtaatgtttaccgtcatccaaacatccaacacactaggatcccacaccgtaataatgccaccagacgcaccaactga 12124772  T
246 agctttaaa 254  Q
    || ||||||    
12124773 agatttaaa 12124781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 10798960 - 10798644
Alignment:
1 ttaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggag 100  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
10798960 ttaaagtcaccaagaacacaccaagccgcttccccatgtaaaggaaacaaattagacaaagaatcccacaacacttgtcgccccctactatcacaaggag 10798861  T
101 cataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaac 200  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||    
10798860 cataaatattcgccaaactgaacacctcattatttgctacaaaggagcctttaacaatcaaacaattatcaatatttactgacaaccagacatccaacac 10798761  T
201 agacggatcccacaccgtaataatacctcccgaagctccgactgaagctttaaatgagtaagccatcaaatcagccccccataaggagtgacacaaaaac 300  Q
    ||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||  |||||||||||    
10798760 agaaggatcccacaccgtgataatacctccagaagcaccgactgaagctttaaaggaataagccatcaaatcagccccccataaggaacgacacaaaaac 10798661  T
301 tcatccaccaccaccaa 317  Q
    |||||||||||| ||||    
10798660 tcatccaccacctccaa 10798644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 5388804 - 5388488
Alignment:
1 ttaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggag 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||    
5388804 ttaaaatcaccaagaacacaccaagccgcttctccatgtaatggaaacaaattagacaaagaatcccacaacacctgatgccccctactgtcacaaggag 5388705  T
101 cataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaac 200  Q
    |||||| |||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||    
5388704 cataaacattcgccaaacagaacacctcattatttgcaacaaaagaacctttaacaatcaaacaattatcaatattaactgacaaccagacatccaacac 5388605  T
201 agacggatcccacaccgtaataatacctcccgaagctccgactgaagctttaaatgagtaagccatcaaatcagccccccataaggagtgacacaaaaac 300  Q
    ||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||   ||||||||||||  |||||||||||    
5388604 agaaggatcccacatcgtaataatacctcccgaagcaccgactgaagctttaaaggagtaagccatcaaatcgatcccccataaggaacgacacaaaaac 5388505  T
301 tcatccaccaccaccaa 317  Q
    |||||||||||| ||||    
5388504 tcatccaccaccgccaa 5388488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 2897316 - 2897373
Alignment:
170 caatatttactgacaaccaaacatccaaaacagacggatcccacaccgtaataatacc 227  Q
    |||||||||| | |||||||||||||||||||   ||||||||||| |||||||||||    
2897316 caatatttaccgtcaaccaaacatccaaaacactaggatcccacacagtaataatacc 2897373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 221996 - 221767
Alignment:
1 ttaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggag 100  Q
    |||||||||||||||||||||||  | ||||| ||||||||  ||| |||||||| ||||| | ||||||| ||||| || || |||||||| |||||||    
221996 ttaaaatcaccaagaacacaccacacagcttccccatgtaactgaatcaaattagtcaaagcaccccacaaaacctggcgaccactactatcgcaaggag 221897  T
101 cataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaac 200  Q
    |||||||||| |||||||| ||||| |||||| ||  ||  ||    ||||| ||||| ||||||| | ||||||||||||| ||||| |||||||  ||    
221896 cataaatatttgccaaacaaaacacttcattactttttatgaacttccctttcacaataaaacaattagcaatatttactgataaccagacatccaccac 221797  T
201 agacggatcccacaccgtaataatacctcc 230  Q
    |   ||||||||||| || |||||||||||    
221796 actaggatcccacacagtgataatacctcc 221767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 50197 - 50126
Alignment:
64 tcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattattt 135  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||    
50197 tcccacagaacctgtcgccccctattatcacaaggagcataaatatttgccaaacaaaacacttcattattt 50126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 17824061 - 17823927
Alignment:
1 ttaaaatcaccaagaacacaccaagccgcttctccatgtaaaggaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggag 100  Q
    ||||| |||||||| |||||||||||  | || || ||||   ||||||||||||| |  | ||||||||| ||||| || |||||| ||| ||||||||    
17824061 ttaaagtcaccaagcacacaccaagctacatcaccgtgtaccagaaacaaattagagaccgcatcccacaaaacctgacgtcccctattattacaaggag 17823962  T
101 cataaatattcgccaaacagaacacctcattattt 135  Q
    |||||||||| |||||||| ||||  |||||||||    
17823961 cataaatatttgccaaacaaaacatttcattattt 17823927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 311
Target Start/End: Complemental strand, 15646353 - 15646136
Alignment:
94 caaggagcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacat 193  Q
    ||||||||||||||||| |||||||| ||||| |||||||||   | ||| || || ||||  ||||||||||    || ||| || | |||||||||||    
15646353 caaggagcataaatatttgccaaacaaaacacttcattatttttaataaacgaccccttaatcatcaaacaatgcgaaaaattaaccgtcaaccaaacat 15646254  T
194 ccaaaacagacggatcccacaccgtaataatacctcccgaagctccgactgaagctttaaatgagtaagccatcaaatcagccccccataaggagtgaca 293  Q
    |||  |||   ||||||||||||||||| ||||| || ||||| || |||| ||||||||| ||  |||||||   ||||| |||||| |  ||| ||||    
15646253 ccactacattaggatcccacaccgtaattataccaccagaagcaccaactgcagctttaaaagaaaaagccataggatcagacccccaaatagagcgaca 15646154  T
294 caaaaactcatccaccac 311  Q
    ||  |||||||| |||||    
15646153 cacgaactcatcaaccac 15646136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 254
Target Start/End: Original strand, 23824553 - 23824763
Alignment:
44 gaaacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattatttgatacaaa 143  Q
    ||||||||||||| |  | ||||||||| ||||| || || ||| ||| |||||||||||| ||||| |||||||| ||||| ||||||||   || |||    
23824553 gaaacaaattagagaccgcatcccacaagacctgacgtcctctattattacaaggagcatatatatttgccaaacaaaacacttcattattatttaaaaa 23824652  T
144 ggaacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaacagacggatcccacaccgtaataatacctcccgaagctccgact 243  Q
     |  |||||||  ||||| ||||   |||  ||||| | || |||||||||||| |||   || |||||||| ||||||||||| || ||||| || |||    
23824653 cgtccctttaatcatcaagcaatttgcaaagtttacagtcacccaaacatccaacacactagggtcccacacagtaataataccaccagaagcgccaact 23824752  T
244 gaagctttaaa 254  Q
    |||| ||||||    
23824753 gaagatttaaa 23824763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 17151045 - 17150864
Alignment:
46 aacaaattagacaaagaatcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattatttgatacaaagg 145  Q
    ||||||||||| | ||  ||||||||   ||| ||||||||| |||  |||||||||||||||||  ||||||| ||||| |||||||||   | |||      
17151045 aacaaattagagacagcttcccacaaactctgacgccccctaatattgcaaggagcataaatatttaccaaacaaaacacttcattatttttaataaaca 17150946  T
146 aacctttaacaatcaaacaataatcaatatttactgacaaccaaacatccaaaacagacggatcccacaccgtaataatacc 227  Q
    | || || |  ||||||||||   |||| ||||| | ||||||||||||||| |||   |||||||||||||||||||||||    
17150945 accccttgatcatcaaacaatttgcaatgtttaccgtcaaccaaacatccaacacattaggatcccacaccgtaataatacc 17150864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 3517690 - 3517850
Alignment:
64 tcccacaacacctgtcgccccctactatcacaaggagcataaatattcgccaaacagaacacctcattatttgatacaaaggaacctttaacaatcaaac 163  Q
    |||||||| | ||| ||||||||| |||  |||||||||||||||||  ||||||| ||||  |||| ||||   | ||| || || || |  |||||||    
3517690 tcccacaaaatctggcgccccctattattgcaaggagcataaatatttaccaaacaaaacatttcatgatttttaataaacgaccccttgattatcaaac 3517789  T
164 aataatcaatatttactgacaaccaaacatccaaaacagacggatcccacaccgtaataat 224  Q
    |||   |||||||||| | ||||||||||||||| |||   ||||||||||||||||||||    
3517790 aatttgcaatatttaccgtcaaccaaacatccaacacactaggatcccacaccgtaataat 3517850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University