View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_high_2 (Length: 527)
Name: NF6917_high_2
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 167 - 514
Target Start/End: Original strand, 4061522 - 4061869
Alignment:
| Q |
167 |
aattatgtatatactccaatgaaagaagtgtgatgggaagggtgttatcgtccgatcaataaaactgccaccattgctgaaatttatgacacgacctatg |
266 |
Q |
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| T |
4061522 |
aattatgtatatactccaatgaaagaagtgtgatgggaagggtgttatcgtccgatcaataaaactgccaccattgctgaaatttatgacacgacctatg |
4061621 |
T |
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| Q |
267 |
tggtgatgttaggtgagtcactttttaaaaggcaacagtgatagtgagttcctatccgtccgatactagtggagaggattaatccaacggtccaaaggcc |
366 |
Q |
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| T |
4061622 |
tggtgatgttaggtgagtcactttttaaaaggcaacagtgatagtgagttcctatccgtccgatactagtggagaggattgatccaacggtccaaaggcc |
4061721 |
T |
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| Q |
367 |
cttaatgcttctgaaggttttaccgtcatagactaattgccaaatttggatcataaagctaccaacacagtaacatgaatgacatttatgacttcgcaat |
466 |
Q |
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| T |
4061722 |
cttaatgcttctgaaggttttaccgtcatagactaattgccaaatttggatcataaagctaccaacacagtaacatgaatgacatttatgactttgcaat |
4061821 |
T |
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| Q |
467 |
ttaggtaatggaaatgaaatctaacgataggatatggtttttgcatct |
514 |
Q |
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| T |
4061822 |
ttaggtaatggaaatgaaatctaacgataggatatggtttttgcatct |
4061869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 4061399 - 4061537
Alignment:
| Q |
18 |
taatgaactccaattttttatttgagctcatattttatacannnnnnnn-aggtcgttgctcttctcgctgtgcctcagatatgaccttcggtacgatgg |
116 |
Q |
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| T |
4061399 |
taatgaactccaattttttatttggactcatattttatacatttttttttaggtcgttgctcttctcgctgtgcctcagatacgaccttcagtacgatga |
4061498 |
T |
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| Q |
117 |
gatgatattcagatagagtgtataattatctatatactc |
155 |
Q |
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| T |
4061499 |
gatgatattcagatagagtgtataattatgtatatactc |
4061537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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