View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_high_3 (Length: 478)
Name: NF6917_high_3
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_high_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 338 - 478
Target Start/End: Original strand, 2747550 - 2747696
Alignment:
| Q |
338 |
ccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatatatatgaaaaattacaaggcataatcaactac |
437 |
Q |
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| T |
2747550 |
ccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatataaatgaaaaattacaaggcataatcaactac |
2747649 |
T |
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| Q |
438 |
------aatagtcaaagacaatatggtaaaaccagaaaagtataatc |
478 |
Q |
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| T |
2747650 |
aatattaatagtcaaagacaatatggtaaaaccagaaaagtataatc |
2747696 |
T |
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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 2755593 - 2755662
Alignment:
| Q |
332 |
accaatccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctga |
401 |
Q |
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| T |
2755593 |
accaagccttaatgtcacatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttctga |
2755662 |
T |
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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 31037022 - 31036960
Alignment:
| Q |
303 |
aaggcaccacacaagctttaagaaacttgaccaatccttaatgtcacataatccaactttgtc |
365 |
Q |
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| T |
31037022 |
aaggtaccacacaagctttaagaaacttgaccaaaccttaatgtcaaataatccaactttgtc |
31036960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 31037151 - 31037093
Alignment:
| Q |
69 |
gtatagttatctttaagaaggaagaaaatagagctgagtgagaatgttcaaaaaggaat |
127 |
Q |
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| T |
31037151 |
gtattgttatctttaagaaggaagaaaatagagctgagagagaatgttcaaaaaggaat |
31037093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 31074289 - 31074219
Alignment:
| Q |
204 |
tgatgtatgctcaaaagaaacttgattcaatttcaatactagtgctcgaaatacttcggttgtctaatgtt |
274 |
Q |
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| T |
31074289 |
tgatgtgtgctcaaaagaaacttaatttaatttcaataccaatgctcaaaataattcgattctctaatgtt |
31074219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 2372859 - 2372946
Alignment:
| Q |
332 |
accaatccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatatatatgaaaaatta |
419 |
Q |
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| T |
2372859 |
accaagccttaatgccatatagtccaactttgtcatagatccataaaattgcttgaaaatttatttctgaaataaaaatgcaaaatta |
2372946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 55322107 - 55322043
Alignment:
| Q |
339 |
cttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaa |
403 |
Q |
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| T |
55322107 |
cttaatgtgacataatctgattttgtcacagagccataaaattgcttgaaaaaggattgctgaaa |
55322043 |
T |
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