View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6917_high_6 (Length: 424)

Name: NF6917_high_6
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6917_high_6
NF6917_high_6
[»] chr7 (13 HSPs)
chr7 (286-411)||(2330762-2330887)
chr7 (286-411)||(2338618-2338743)
chr7 (286-408)||(1605219-1605341)
chr7 (286-408)||(1556604-1556726)
chr7 (310-408)||(1597245-1597343)
chr7 (287-408)||(1540560-1540681)
chr7 (286-408)||(1106832-1106954)
chr7 (294-408)||(2322151-2322265)
chr7 (286-408)||(3954356-3954478)
chr7 (300-408)||(1089492-1089600)
chr7 (286-369)||(1549784-1549867)
chr7 (300-357)||(1563874-1563931)
chr7 (312-408)||(2326441-2326537)
[»] scaffold0491 (1 HSPs)
scaffold0491 (286-408)||(5211-5333)
[»] chr8 (3 HSPs)
chr8 (286-408)||(18748370-18748492)
chr8 (307-408)||(18738460-18738561)
chr8 (307-408)||(18743424-18743525)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 2330887 - 2330762
Alignment:
Q  286 ggttcacaatatgcaataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaa 385  Q
    |||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||    
T  2330887 ggttcacaatatgcaataatgctttgagttcatgactcatgagttgctgcactgaaatttcactcaacggaatgtttagtggtgcaagctctatgacaaa 2330788  T
Q  386 actctgtgacacacttttcattgatg 411  Q
    ||||||||||||||||||||||||||    
T  2330787 actctgtgacacacttttcattgatg 2330762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 2338743 - 2338618
Alignment:
Q  286 ggttcacaatatgcaataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaa 385  Q
    ||||||||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||| |||||||    
T  2338743 ggttcacaatatggaataatgctttgaattcttgactcatgagttgctgcactgaaatttcacccaacagaaagtttaatggtgcaatctctgggacaaa 2338644  T
Q  386 actctgtgacacacttttcattgatg 411  Q
    ||||||||||||||||||||||||||    
T  2338643 actctgtgacacacttttcattgatg 2338618  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 286 - 408
Target Start/End: Complemental strand, 1605341 - 1605219
Alignment:
Q  286 ggttcacaatatgcaataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaa 385  Q
    ||||| ||||||  |||||| |||| |||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||  |||||   ||||||    
T  1605341 ggttcccaatataaaataatcctttcagttcttgactcatgagttgttgcactgaaatttcactcaaaggaatgcttaatggtgtgagctccgtgacaaa 1605242  T
Q  386 actctgtgacacacttttcattg 408  Q
    ||| |||||||||| ||||||||    
T  1605241 actttgtgacacacgtttcattg 1605219  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 286 - 408
Target Start/End: Original strand, 1556604 - 1556726
Alignment:
Q  286 ggttcacaatatgcaataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaa 385  Q
    ||||| ||||||  |||||| | |||||||||| |||||| ||||| |||||||||||||||||||| |||||| ||||||||| ||| ||   ||||||    
T  1556604 ggttctcaatataaaataatgcattgagttcttcactcattagttgttgcactgaaatttcactcaaaggaatgcttaatggtgtaagttcagtgacaaa 1556703  T
Q  386 actctgtgacacacttttcattg 408  Q
    ||| |||||||||| ||||||||    
T  1556704 actttgtgacacacgtttcattg 1556726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 408
Target Start/End: Complemental strand, 1597343 - 1597245
Alignment:
Q  310 tgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaaactctgtgacacacttttcattg 408  Q
    ||||||||| |||||| ||||||||||| |||||||||||||| |||||| ||||||||| ||||||   ||||||||| |||||||||| ||||||||    
T  1597343 tgagttcttcactcattagttgctgcacggaaatttcactcaaaggaatgcttaatggtgtaagctcggtgacaaaactttgtgacacacgtttcattg 1597245  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 287 - 408
Target Start/End: Original strand, 1540560 - 1540681
Alignment:
Q  287 gttcacaatatgcaataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaaa 386  Q
    |||| ||||||  |||||| |||||||||||| |||||| ||||||| |||||||||||||||||| |||||| | || |||| ||||||   |||||||    
T  1540560 gttcccaatataaaataatgctttgagttcttcactcattagttgctccactgaaatttcactcaaaggaatgctaaacggtgtaagctcggtgacaaaa 1540659  T
Q  387 ctctgtgacacacttttcattg 408  Q
    || |||||||||| ||||||||    
T  1540660 ctttgtgacacacgtttcattg 1540681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 408
Target Start/End: Complemental strand, 1106954 - 1106832
Alignment:
Q  286 ggttcacaatatgcaataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaa 385  Q
    ||||| ||||||  |||||| |||| |||||||||| | | ||||| |||||||||||||||||||| |||||| |||||||||  |||||   ||||||    
T  1106954 ggttcccaatataaaataatcctttcagttcttgacccgtgagttgttgcactgaaatttcactcaaaggaatgcttaatggtgtgagctccgtgacaaa 1106855  T
Q  386 actctgtgacacacttttcattg 408  Q
    ||| ||||| |||| ||||||||    
T  1106854 actttgtgagacacgtttcattg 1106832  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 408
Target Start/End: Complemental strand, 2322265 - 2322151
Alignment:
Q  294 atatgcaataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaaactctgtg 393  Q
    ||||| |||||| |||| | |||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||| ||| ||   |  |||||||||||    
T  2322265 atatgaaataatgcttttaattcttgactcatcagttgctgcacagaaatttcactcaaaggaatgcttaatggtgtaagttcagtggaaaaactctgtg 2322166  T
Q  394 acacacttttcattg 408  Q
    || ||| ||||||||    
T  2322165 acgcacatttcattg 2322151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 408
Target Start/End: Original strand, 3954356 - 3954478
Alignment:
Q  286 ggttcacaatatgcaataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaa 385  Q
    ||||||| || || |||||| |||||||||||||| |||  ||||||| |||||||||||| ||||| |||||| ||||||||| || |||   |  |||    
T  3954356 ggttcacgatctgaaataatgctttgagttcttgattcacgagttgcttcactgaaatttctctcaaaggaatgcttaatggtgtaacctcaatggaaaa 3954455  T
Q  386 actctgtgacacacttttcattg 408  Q
    ||| |||||||||||||||||||    
T  3954456 actttgtgacacacttttcattg 3954478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 408
Target Start/End: Complemental strand, 1089600 - 1089492
Alignment:
Q  300 aataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaaactctgtgacacac 399  Q
    |||||| ||||||||||||||||||  |||||||||| ||||||||||||||| ||| |  |||||||||  |||||   | ||||||| ||||||||||    
T  1089600 aataatgctttgagttcttgactcaagagttgctgcattgaaatttcactcaaaggagttcttaatggtgtcagctcagtggcaaaactttgtgacacac 1089501  T
Q  400 ttttcattg 408  Q
     ||||||||    
T  1089500 gtttcattg 1089492  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 369
Target Start/End: Original strand, 1549784 - 1549867
Alignment:
Q  286 ggttcacaatatgcaataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtg 369  Q
    |||| |||||||| |||||  ||||||||||||||||||  |||||||||| |||||||||||||||  || | ||||||||||    
T  1549784 ggtttacaatatgaaataacgctttgagttcttgactcaagagttgctgcaatgaaatttcactcaaaagagtttttaatggtg 1549867  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 1563874 - 1563931
Alignment:
Q  300 aataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaa 357  Q
    |||||| ||| |||||||| |||||| |||||||||||||||||||||||||| ||||    
T  1563874 aataatgcttcgagttcttcactcattagttgctgcactgaaatttcactcaaaggaa 1563931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 408
Target Start/End: Complemental strand, 2326537 - 2326441
Alignment:
Q  312 agttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaaactctgtgacacacttttcattg 408  Q
    |||||||||||||| |||||||||||||||||||||||| |  ||||  || |||||| | | ||   | |||||||||||||||||| ||||||||    
T  2326537 agttcttgactcatgagttgctgcactgaaatttcactcgaaagaatacttgatggtgtaggttcaatggcaaaactctgtgacacacatttcattg 2326441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 408
Target Start/End: Original strand, 5211 - 5333
Alignment:
Q  286 ggttcacaatatgcaataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaa 385  Q
    ||||| ||||||  || ||| |||||||||||| |||||| ||||||||||||||||||||||| || |||||  ||||| ||| ||||||   ||||||    
T  5211 ggttcgcaatataaaacaatgctttgagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaatcgtggaagctcggtgacaaa 5310  T
Q  386 actctgtgacacacttttcattg 408  Q
    ||| || ||||||| ||||||||    
T  5311 actttgcgacacacatttcattg 5333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 408
Target Start/End: Original strand, 18748370 - 18748492
Alignment:
Q  286 ggttcacaatatgcaataattctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaa 385  Q
    ||||| ||||||  || ||| |||||||||||| |||||| ||||||||||||||||||||||| || |||||  ||||| ||| ||||||   ||||||    
T  18748370 ggttcgcaatataaaacaatgctttgagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaatcgtggaagctcggtgacaaa 18748469  T
Q  386 actctgtgacacacttttcattg 408  Q
    ||| || ||||||| ||||||||    
T  18748470 actttgcgacacacatttcattg 18748492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 408
Target Start/End: Original strand, 18738460 - 18738561
Alignment:
Q  307 ctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaaactctgtgacacacttttcat 406  Q
    |||| ||||||| |||||| ||||||||||||||||||||||| || |||||  ||||| ||| ||||||   ||||||||| || ||||||| ||||||    
T  18738460 ctttaagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaatcgtggaagctcggtgacaaaactttgcgacacacatttcat 18738559  T
Q  407 tg 408  Q
    ||    
T  18738560 tg 18738561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 408
Target Start/End: Original strand, 18743424 - 18743525
Alignment:
Q  307 ctttgagttcttgactcataagttgctgcactgaaatttcactcaacggaatgtttaatggtgcaagctctcggacaaaactctgtgacacacttttcat 406  Q
    |||| ||||||| |||||| ||||||||||||||||||||||| || |||||  ||||| ||| ||||||   ||||||||| || ||||||| ||||||    
T  18743424 ctttaagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaatcgtggaagctcggtgacaaaactttgcgacacacatttcat 18743523  T
Q  407 tg 408  Q
    ||    
T  18743524 tg 18743525  T

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