View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6917_high_8 (Length: 392)

Name: NF6917_high_8
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6917_high_8
NF6917_high_8
[»] chr3 (1 HSPs)
chr3 (6-375)||(25121267-25121634)
[»] chr1 (1 HSPs)
chr1 (231-372)||(29879267-29879408)
[»] chr4 (4 HSPs)
chr4 (4-69)||(5204420-5204485)
chr4 (4-69)||(51303448-51303513)
chr4 (4-69)||(9536263-9536328)
chr4 (4-61)||(38224168-38224225)
[»] chr7 (2 HSPs)
chr7 (113-183)||(37190627-37190697)
chr7 (239-310)||(37190509-37190579)
[»] chr2 (1 HSPs)
chr2 (4-61)||(35061607-35061664)
[»] chr8 (1 HSPs)
chr8 (4-108)||(18889370-18889474)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 6 - 375
Target Start/End: Complemental strand, 25121634 - 25121267
Alignment:
Q  6 gtttggtggtcttggcgtcatcggaatctcatgtgtttgactggtgaaacttggtctttacatcacctaacttacaacataaagaattcgacagaggtca 105  Q
    ||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25121634 gtttggtggtcttggcgtcatcggaatc--atgtgtttgagtggtgaaacttggtctttacatcacctaacttacaacataaagaattcgacagaggtca 25121537  T
Q  106 taaaagctagcttttcttctactacttatgttgttacagttgaccgatacataaaatggaacaacaacaacgcctcttgtgcaatcttcaatgtggatgg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25121536 taaaagctagcttttcttctactacttatgttgttacagttgaccgatacataaaatggaacaacaacaacgcctcttgtgcaatcttcaatgtggatgg 25121437  T
Q  206 tatttgtcatgttattcctattcgaactggctttggtggaattctgcgtaaccatacacggttgtttctatcgggtttttcaggttttattccaaactca 305  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  25121436 tagttgtcatggtattcctattcgaactggctttggtggaattctgcgtaaccatacagggttgtttctatcgggtttttcaggttttattccagactca 25121337  T
Q  306 gatgatatcatgttggttgaacgtttagttatctatcatgatcttatcatggccaaggatttgggttgtg 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25121336 gatgatatcatgttggttgaacgtttagttatctatcatgatcttatcatggctaaggatttgggttgtg 25121267  T

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Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 231 - 372
Target Start/End: Original strand, 29879267 - 29879408
Alignment:
Q  231 actggctttggtggaattctgcgtaaccatacacggttgtttctatcgggtttttcaggttttattccaaactcagatgatatcatgttggttgaacgtt 330  Q
    ||||||||||||||||||||  ||||| || || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| | ||    
T  29879267 actggctttggtggaattctctgtaactatgcaaggttgtttctatcgggtttttcaggttttatttcagactcagatgatatcatgttggatgagcttt 29879366  T
Q  331 tagttatctatcatgatcttatcatggccaaggatttgggtt 372  Q
     || || |||||||||||| ||| ||||||||||||| ||||    
T  29879367 cagctaactatcatgatctgatcgtggccaaggattttggtt 29879408  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 5204485 - 5204420
Alignment:
Q  4 gagtttggtggtcttggcgtcatcggaatctcatgtgtttgactggtgaaacttggtctttacatc 69  Q
    ||||||||||||||||||| ||||| || || |||||||||  |||||||||||||||||||||||    
T  5204485 gagtttggtggtcttggcgacatcgaaaccttatgtgtttgggtggtgaaacttggtctttacatc 5204420  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 51303513 - 51303448
Alignment:
Q  4 gagtttggtggtcttggcgtcatcggaatctcatgtgtttgactggtgaaacttggtctttacatc 69  Q
    |||||||||| |||||||| |||| |||||| |||||||||  ||||||| |||||||||||||||    
T  51303513 gagtttggtgatcttggcgacatcagaatcttatgtgtttgggtggtgaatcttggtctttacatc 51303448  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 9536263 - 9536328
Alignment:
Q  4 gagtttggtggtcttggcgtcatcggaatctcatgtgtttgactggtgaaacttggtctttacatc 69  Q
    ||||||||||||||||||| ||||  ||||| |||||| ||  |||||||||||||||||| ||||    
T  9536263 gagtttggtggtcttggcgacatcaaaatcttatgtgtatgggtggtgaaacttggtctttgcatc 9536328  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 38224168 - 38224225
Alignment:
Q  4 gagtttggtggtcttggcgtcatcggaatctcatgtgtttgactggtgaaacttggtc 61  Q
    |||| |||||||||||||  ||||| ||| | |||||||||| |||||||||||||||    
T  38224168 gagtgtggtggtcttggcagcatcgaaattttatgtgtttgagtggtgaaacttggtc 38224225  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 37190697 - 37190627
Alignment:
Q  113 tagcttttcttctactacttatgttgttacagttgaccgatacataaaatggaacaacaacaacgcctctt 183  Q
    |||||||||||||| | ||| ||  ||||  ||||| |||||||||||||||||||||||||||| |||||    
T  37190697 tagcttttcttctattgcttctgccgttaacgttgatcgatacataaaatggaacaacaacaacgtctctt 37190627  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 37190579 - 37190509
Alignment:
Q  239 tggtggaattctgcgtaaccatacacggttgtttctatcgggtttttcaggttttattccaaactcagatga 310  Q
    ||||||||||||||||||| ||  |  ||||||  ||||| |||||||||||||||||||||||||| ||||    
T  37190579 tggtggaattctgcgtaactatgtagagttgttg-tatcgagtttttcaggttttattccaaactcaaatga 37190509  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 35061664 - 35061607
Alignment:
Q  4 gagtttggtggtcttggcgtcatcggaatctcatgtgtttgactggtgaaacttggtc 61  Q
    ||||||||||||||||||| ||||  ||||| |||||||||  |||||||||||||||    
T  35061664 gagtttggtggtcttggcggcatcaaaatcttatgtgtttgggtggtgaaacttggtc 35061607  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 18889474 - 18889370
Alignment:
Q  4 gagtttggtggtcttggcgtcatcggaatctcatgtgtttgactggtgaaacttggtctttacatcacctaacttacaacataaagaattcgacagaggt 103  Q
    |||||| ||||||||| |||||||  |||||||||||||||  ||  |||||||||||  | || |||||  |||  |||||||| ||| ||| ||||||    
T  18889474 gagtttagtggtcttgacgtcatcaaaatctcatgtgtttgggtgtcgaaacttggtcccttcagcaccttgcttgtaacataaataatacgatagaggt 18889375  T
Q  104 cataa 108  Q
    |||||    
T  18889374 cataa 18889370  T

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