View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_1 (Length: 911)
Name: NF6917_low_1
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_1 |
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| [»] scaffold0311 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 438 - 883
Target Start/End: Complemental strand, 31822345 - 31821903
Alignment:
| Q |
438 |
ctgattagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggtt |
537 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | |
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| T |
31822345 |
ctgattagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgatttcttttctcaatcaaaccattatggct |
31822246 |
T |
|
| Q |
538 |
cttttggctctaattctccaaattctcagaaactcaacattcaccaaatccttcatttggctaattagttagcatctccaatcttaataagaatttatgc |
637 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||| |||||| |
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| T |
31822245 |
cttttggctctaattctccaaattctcataaactcaacattcaccatatccttcatttggctaattagttagcatcaccaatcttgagaagaa-ttatgc |
31822147 |
T |
|
| Q |
638 |
atatgattcagcttcattcatttgaatcatctcatattgtcttctcaaagcttaaagccatatcttcttgagattatttcgtctccaccatacacctttc |
737 |
Q |
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| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31822146 |
aaatgattcagcttcattcatctggatcatctcatattgtcttctcaaagcttaaagccatatcttcttgagattattttgtctccaccatacacctttc |
31822047 |
T |
|
| Q |
738 |
ttgagtgtatctcatgcaccctttgttgtctcatcttcaatattatcctatcaaagatatttgaattcacacattggtgaatcaagaatagacttttgca |
837 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31822046 |
ttgagtgtatctcatgcaccctttgttgtctcatcttca--attatcctatcaaagatatttgaattcacacattggtgaatcaagaatagacttttgca |
31821949 |
T |
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| Q |
838 |
tctttcttgatgtgttcacgatgtgttgccctttgtgcgccagtaa |
883 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31821948 |
tctttcttgatgtgttcacgatgtgttgccctttgtgcgccagtaa |
31821903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 154 - 339
Target Start/End: Complemental strand, 31822629 - 31822444
Alignment:
| Q |
154 |
gactcgtttcttgtgaatcttgggttgatgagattgtgatgtaaccttatacgagttactttgcttcaacctcaatttttgtacttctagcgaggcttgc |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
31822629 |
gactcgtttcttgtgaatcttgggttgatgagattgtgatgtaaccttatacgagttactttgcttcaatctcaatttttgtacttctagtgaggcttgc |
31822530 |
T |
|
| Q |
254 |
aattcttttcaccttatatgatcaacacttgcagttaaggttctcaacatattttcaatcttcatcaagtcactaactgtttcact |
339 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31822529 |
aattcttttcacctaatatgatcaacacttgcagttaaggttctcaacatattttcaatcttcatcaagtcactaactgtttcact |
31822444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31822765 - 31822703
Alignment:
| Q |
1 |
atgggataattaggatagacttgataatgtttttataaatagaaattgattttaatttcttga |
63 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31822765 |
atgggataattaggatagacttgataatgtttttataaatagaaattgattttaatttcttga |
31822703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 7165644 - 7165696
Alignment:
| Q |
444 |
agtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaat |
496 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7165644 |
agtcctataaatatggactagtatgtactcattttctatcttttgatcaaaat |
7165696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 31822707 - 31822671
Alignment:
| Q |
76 |
cttgattatttgaattcttgttagaaccttcaaaaaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
31822707 |
cttgattatttgaattcttgttagaaccttcaaaaaa |
31822671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 6e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 444 - 576
Target Start/End: Original strand, 27737862 - 27737994
Alignment:
| Q |
444 |
agtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttcttttg |
543 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| ||| |
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| T |
27737862 |
agtcctataaataaggactagtatgtactcattttctatcttttgatcaaaatgtttttctacgattccttttctcaatcaaagccttatggctctattg |
27737961 |
T |
|
| Q |
544 |
gctctaattctccaaattctcagaaactcaaca |
576 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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| T |
27737962 |
gctctaattctccaaattctcaaaaactcaaca |
27737994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 463 - 559
Target Start/End: Original strand, 36472552 - 36472648
Alignment:
| Q |
463 |
agtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttcttttggctctaattctccaaa |
559 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||| |||||||||||| |
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| T |
36472552 |
agtatgtactcattttccatcttttgatcaaaatgtttttctatgattccttttgtcaatcaaagccttacggctcttttggctttaattctccaaa |
36472648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 755 - 867
Target Start/End: Original strand, 1744636 - 1744747
Alignment:
| Q |
755 |
accctttgttgtctcatcttcaatattatcctatcaaagatatttgaattcacacattggtgaatcaagaatagactttt-gcatctttcttgatgtgtt |
853 |
Q |
| |
|
|||||||||||| || ||||||| | ||| | ||||||||||| |||| | ||||||| ||||||||||||||||||| ||||||| || |||||| |
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| T |
1744636 |
accctttgttgtatcctcttcaaca--atcttctcaaagatattcgaatacgcacattgaggaatcaagaatagacttttctcatctttgtttttgtgtt |
1744733 |
T |
|
| Q |
854 |
cacgatgtgttgcc |
867 |
Q |
| |
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|| ||||||||||| |
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| T |
1744734 |
catgatgtgttgcc |
1744747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 441 - 562
Target Start/End: Original strand, 13489 - 13609
Alignment:
| Q |
441 |
attagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttc-t |
539 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| | || ||||||||||||||| |||| ||| || | |
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|
| T |
13489 |
attagtcctataaatatggactagtatgtactcattttctatcttttgatcaaaatatttctctgtaat--cttttctcaatcaaagccttttggctctt |
13586 |
T |
|
| Q |
540 |
tttggctctaattctccaaattc |
562 |
Q |
| |
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|||| ||||||||||| ||||| |
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| T |
13587 |
tttgtttctaattctccgaattc |
13609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 463 - 565
Target Start/End: Original strand, 15090 - 15190
Alignment:
| Q |
463 |
agtatgtactcattttctatcttttgatcaaaatgtttttctatgattccttttctcaatcaaacccttatggttc-ttttggctctaattctccaaatt |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||| | || ||||| ||||||||| |||| ||| || ||||| ||||||||||| |||| |
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| T |
15090 |
agtatgtactcattttctatcttttgatcaaaatatttctctgtaat--ctttt-tcaatcaaagccttttggctctttttgtttctaattctccgaatt |
15186 |
T |
|
| Q |
562 |
ctca |
565 |
Q |
| |
|
|||| |
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|
| T |
15187 |
ctca |
15190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 788 - 875
Target Start/End: Complemental strand, 23577878 - 23577790
Alignment:
| Q |
788 |
tcaaagatatttgaattcacacattggtgaatcaagaatagacttttgc-atctttcttgatgtgttcacgatgtgttgccctttgtgc |
875 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||||||| ||| | ||||||||| |||||||| ||||||||||| ||||||| |
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| T |
23577878 |
tcaaagatattcaaatccacacattgatgaatcaagaatagacctttccaatctttcttcttgtgttcatgatgtgttgccatttgtgc |
23577790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 444 - 487
Target Start/End: Complemental strand, 20985960 - 20985917
Alignment:
| Q |
444 |
agtcctataaatatggacaagtatgtactcattttctatctttt |
487 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
20985960 |
agtcctataaatatggactagtatgtactcatttgctatctttt |
20985917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 493 - 565
Target Start/End: Original strand, 30372021 - 30372093
Alignment:
| Q |
493 |
aaatgtttttctatgattccttttctcaatcaaacccttatggttcttttggctctaattctccaaattctca |
565 |
Q |
| |
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|||||||| | | ||| ||||||||||||||||| |||||||| ||||||| || ||||||| ||||||||| |
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| T |
30372021 |
aaatgtttctatgtgaatccttttctcaatcaaagccttatggctcttttgtttccaattctctaaattctca |
30372093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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