View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_11 (Length: 389)
Name: NF6917_low_11
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 5195535 - 5195143
Alignment:
| Q |
1 |
gtttgttaagttgcttaaacactcgggaagtt--gct-taaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcatgtcata |
97 |
Q |
| |
|
||||||||||||||||||||| || ||||||| || |||||||||| | ||||||||||| ||||||||||||||| ||||||||||||| ||||||| |
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| T |
5195535 |
gtttgttaagttgcttaaacaatctggaagtttagcactaaacatgtttttgctgatatccagttctaccaaatccttaaaattgcatagtcctgtcata |
5195436 |
T |
|
| Q |
98 |
attaactatgtcctgtcatctttacaaaaattgacattatcataaaaatctt-aaagtttttccaatggcatcaatatatacattaattaacttatttca |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5195435 |
attaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttatttcg |
5195336 |
T |
|
| Q |
197 |
ttgtttttgttaattattt----------------aaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaa |
280 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
5195335 |
ttgtttttgttaattatttaaaatttaaaataaaaaaaaaagttatcttcattgtaacaatcgatccccaaaaccatcccgtgaagcaattatgaattaa |
5195236 |
T |
|
| Q |
281 |
ttatttatgtttgatagtattgataccttcaattgagcccttcatttgattataggttaaacttaacattttcaaatttttcaaatgttgaac |
373 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5195235 |
ttatttgtgtttggtagtattgataccttcaattgagccgttcatttgattatcgtttaaacttaacattttcaaatttttcaaatgttgaac |
5195143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 5182141 - 5181745
Alignment:
| Q |
1 |
gtttgttaagttgcttaaacactcgggaagtt--gct-taaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcatgtcata |
97 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
5182141 |
gtttgttaagttgcttaaacactctggaagtttagcactaaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcctgtcata |
5182042 |
T |
|
| Q |
98 |
a----ttaactatgtcctgtcatctttacaaaaattgacattatcataaaaatctt-aaagtttttccaatggcatcaatatatacattaattaacttat |
192 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5182041 |
attaattaactatgtcctgtcatctatacaaaaattgacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttat |
5181942 |
T |
|
| Q |
193 |
ttcattgtttttgttaattatttaa----------------aaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaa |
276 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5181941 |
ttcattctttttgttaattatttaaaatttaaaatcaatataaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcaattatgaa |
5181842 |
T |
|
| Q |
277 |
ttaattatttatgtttgatagtattgataccttcaattgagcccttcatttgattataggttaaacttaacattttcaaatttttcaaatgttgaac |
373 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5181841 |
ttaattatttgtgtttggtagtattgataccttcaattgagccgttcatttgattatttcttaaacttaacattttcaagtttttcaaatgttgaac |
5181745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 5159893 - 5159510
Alignment:
| Q |
1 |
gtttgttaagttgcttaaacactcgggaagtt--gct-taaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcatgtcata |
97 |
Q |
| |
|
|||||||||||||||||||||||| |||| || || |||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
5159893 |
gtttgttaagttgcttaaacactcaggaaatttagcactaaacatgttctggctgatatccagttctaccaaatccttcaaattgcatagtcctgtcata |
5159794 |
T |
|
| Q |
98 |
attaa----ctatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagtttttccaatggcatcaatatatacattaattaacttatt |
193 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
5159793 |
attaattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagtttttccaatggcgtcaatatatacattaattaacttatt |
5159694 |
T |
|
| Q |
194 |
tcattgtttttgttaattattt----------------aaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaat |
277 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5159693 |
tcattgtttttgttaattatttaaaatttaaaatcaataaaaaagttatcttcattgtaacaat------------ccatcccgtgaagcagttatgaat |
5159606 |
T |
|
| Q |
278 |
taattatttatgtttgatagtattgataccttcaattgagcccttcatttgattataggttaaacttaacattttcaaatttttcaaatgttgaac |
373 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
5159605 |
taattatttgtgtttggtagtattcataccttcaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttcaaatgttgaac |
5159510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 4842716 - 4842927
Alignment:
| Q |
1 |
gtttgttaagttgcttaaacactcgggaagttg---cttaaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcatgtcata |
97 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| | ||||||||| | ||||||||||| |||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
4842716 |
gtttgttaagttacttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttcttccaaatccttcaaattgcatagtcctgtcata |
4842815 |
T |
|
| Q |
98 |
attaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagtttttccaatggcatcaatatatacattaattaacttatttcat |
197 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |
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| T |
4842816 |
attaactatgtccggtcatctttcaaaaaattaacattatcataaaaatcttaaagtttttccaatggactcaatatataaattaatttacttatttcat |
4842915 |
T |
|
| Q |
198 |
tgtttttgttaa |
209 |
Q |
| |
|
|||||||||||| |
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|
| T |
4842916 |
tgtttttgttaa |
4842927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 5172809 - 5172630
Alignment:
| Q |
1 |
gtttgttaagttgcttaaacactcgggaagttg---cttaaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcatgtcata |
97 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| | ||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5172809 |
gtttgttaagttacttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttctaccaaatccttcaaattgcatagtcctgtcata |
5172710 |
T |
|
| Q |
98 |
attaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagtttttccaatggcatcaatatata |
177 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
5172709 |
attaactatgtccagttatctttacaaaaattgacattatcataaaaatcttaaagtttttccaatggactcaatatata |
5172630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 275 - 373
Target Start/End: Original strand, 4843028 - 4843126
Alignment:
| Q |
275 |
aattaattatttatgtttgatagtattgataccttcaattgagcccttcatttgattataggttaaacttaacattttcaaatttttcaaatgttgaac |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||| |
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|
| T |
4843028 |
aattaattatttatgtttgatagtattgataccttcaattgagcccttcatttgattatcgcttaaccttaacattttcaagtttttcaaatgttgaac |
4843126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 275 - 373
Target Start/End: Complemental strand, 5172594 - 5172496
Alignment:
| Q |
275 |
aattaattatttatgtttgatagtattgataccttcaattgagcccttcatttgattataggttaaacttaacattttcaaatttttcaaatgttgaac |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |
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|
| T |
5172594 |
aattaattatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaacttaacattttcaattttttcaagtgttgaac |
5172496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 5213701 - 5213602
Alignment:
| Q |
1 |
gtttgttaagttgcttaaacactcgggaagttgct---taaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcatgtcata |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||| |
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|
| T |
5213701 |
gtttgttaagttgcttaaacactcgggaagttgcgcgctaaacatgttatagctgatatctagctctaccaaatccttcaatttgcatagtcctgtcata |
5213602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 373
Target Start/End: Complemental strand, 5212815 - 5212722
Alignment:
| Q |
280 |
attatttatgtttgatagtattgataccttcaattgagcccttcatttgattataggttaaacttaacattttcaaatttttcaaatgttgaac |
373 |
Q |
| |
|
||||||| |||||| || |||| |||||||||| |||||| ||||||||||| | | |||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
5212815 |
attatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcataaacttagcattttcaagtttctcaaatgttgaac |
5212722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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