View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_12 (Length: 387)
Name: NF6917_low_12
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 182 - 368
Target Start/End: Complemental strand, 30908858 - 30908672
Alignment:
| Q |
182 |
attcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtc |
281 |
Q |
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| T |
30908858 |
attcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtc |
30908759 |
T |
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| Q |
282 |
tcaaatatggctcgtcactggtagaaattccaacaccattgaagctggttggcaggcatgttaaattaattacatatacatggttat |
368 |
Q |
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| T |
30908758 |
tcaaatatggctcgtcactggtagaaatgccaacaccattgaagctggttggcaggtatgttaaattaattacatatacatggttat |
30908672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 189 - 357
Target Start/End: Complemental strand, 30918948 - 30918781
Alignment:
| Q |
189 |
tgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaata |
288 |
Q |
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||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30918948 |
tgggtatgtgaccggagatctgtactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaata |
30918849 |
T |
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| Q |
289 |
tggctcgtcactggtagaaattccaacaccattgaagctggttggcaggcatgttaaattaattacata |
357 |
Q |
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| T |
30918848 |
tggctgacgaccggtagaaattccaacaccattgaagctggttggcaggcatgtt-aattaattacata |
30918781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 125 - 343
Target Start/End: Complemental strand, 30928844 - 30928627
Alignment:
| Q |
125 |
attttaaaaatgaa--ataagaaatggattctgctactgattgttctacactgcatagtattcatatgggtctgtgactggagatcgatactatggagca |
222 |
Q |
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| T |
30928844 |
attttgaaaatgaattataagaaatggattcttct---gattgctctacactgcacagcattcatatgggtctgtgactggagatcgatactatggagca |
30928748 |
T |
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| Q |
223 |
aaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaatatggctcgtcactggtagaaattccaacaccattg |
322 |
Q |
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||||||||||||||||||||| | |||||||| |||| |||||| |||||||||||||||||||||||| || || | | ||||| |||||||||| |
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| T |
30928747 |
aaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggtcctcgccaatggaaatgagaacaccattg |
30928648 |
T |
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| Q |
323 |
aagctggttggcaggcatgtt |
343 |
Q |
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| T |
30928647 |
aagctggttggcaggcatgtt |
30928627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 30910114 - 30910041
Alignment:
| Q |
16 |
aaattaaaccaagtcggagtggataccactaaatataaacatgtggtatgcaatcacaggaactcatatctttt |
89 |
Q |
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| T |
30910114 |
aaattaatgcaagttggagtggaaaccactaaatataaacatgtggtatgcaatcacaggaactcatatttttt |
30910041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 30919562 - 30919495
Alignment:
| Q |
16 |
aaattaaaccaagtcggagtggataccactaaatataaacatgtggtatgcaatcacaggaactcata |
83 |
Q |
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| T |
30919562 |
aaattaaatcaagttggaatggataccactaaatataaacatgtggtatgcaatcacagaaactcata |
30919495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 30931029 - 30930974
Alignment:
| Q |
36 |
ggataccactaaatataaacatgtggtatgcaatcacaggaactcatatcttttgt |
91 |
Q |
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|||| ||||| ||||||||||||||||||||||||| || ||||| ||| |||||| |
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| T |
30931029 |
ggatgccactgaatataaacatgtggtatgcaatcatagaaactcgtattttttgt |
30930974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 29254311 - 29254394
Alignment:
| Q |
171 |
cactgcatagtattcatatgggtctgtgactggagatcgatactatggagcaaaggctacaataaatttgtggtccccacatgt |
254 |
Q |
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| T |
29254311 |
cactgcacagcattcaattgggtctgtgactggagatagataccatggagcacaggctaccataaatgtgtgggccccccatgt |
29254394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 29254462 - 29254494
Alignment:
| Q |
313 |
aacaccattgaagctggttggcaggcatgttaa |
345 |
Q |
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| T |
29254462 |
aacaccattgaagctggttggcaggcatgttaa |
29254494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 29364704 - 29364776
Alignment:
| Q |
215 |
atggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaat |
287 |
Q |
| |
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|||||||||||||||||||||| ||||| |||| || |||||| || ||| |||||||||||| ||||||| |
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| T |
29364704 |
atggagcaaaggctacaataaacgtgtgggccccccaagtggaaagtccaaatgaattcagcttggctcaaat |
29364776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 347
Target Start/End: Original strand, 29234684 - 29234718
Alignment:
| Q |
313 |
aacaccattgaagctggttggcaggcatgttaaat |
347 |
Q |
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| T |
29234684 |
aacaccattgaagctggttggcaggcatgctaaat |
29234718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 303
Target Start/End: Original strand, 29246114 - 29246207
Alignment:
| Q |
210 |
atactatggagcaaaggctacaataaatttgtggtccccacatgtggaaggtgaaaaagaattcagcttgtctcaaatatggctcgtcactggt |
303 |
Q |
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||||||||||||| |||||| |||||| ||||| |||| ||||| ||| | ||| |||||||||||| |||||||||| ||||| ||||| |
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| T |
29246114 |
atactatggagcacaggctataataaacgtgtgggccccccatgttgaaagcccaaatgaattcagcttgggtcaaatatggatcgtctctggt |
29246207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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