View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6917_low_13 (Length: 366)

Name: NF6917_low_13
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6917_low_13
NF6917_low_13
[»] chr7 (19 HSPs)
chr7 (18-353)||(49124277-49124611)
chr7 (173-330)||(25545014-25545173)
chr7 (173-293)||(31136359-31136481)
chr7 (196-300)||(12471573-12471677)
chr7 (166-335)||(48070827-48070994)
chr7 (176-298)||(32971453-32971577)
chr7 (178-270)||(35738005-35738096)
chr7 (166-260)||(2501930-2502024)
chr7 (178-261)||(12470103-12470186)
chr7 (190-256)||(2923125-2923191)
chr7 (221-271)||(39571668-39571718)
chr7 (178-271)||(3996813-3996906)
chr7 (160-324)||(12012751-12012919)
chr7 (166-217)||(44523594-44523645)
chr7 (200-261)||(48638204-48638265)
chr7 (198-249)||(12470899-12470950)
chr7 (235-293)||(2197515-2197575)
chr7 (212-293)||(45595597-45595683)
chr7 (251-296)||(46265149-46265196)
[»] chr6 (11 HSPs)
chr6 (166-334)||(11846453-11846623)
chr6 (166-271)||(9826950-9827055)
chr6 (166-301)||(11971623-11971760)
chr6 (166-324)||(23300630-23300790)
chr6 (166-275)||(2453971-2454082)
chr6 (166-276)||(1208771-1208881)
chr6 (221-301)||(26186542-26186624)
chr6 (166-261)||(7176365-7176460)
chr6 (231-298)||(5416303-5416370)
chr6 (176-254)||(20722497-20722575)
chr6 (198-256)||(26880016-26880074)
[»] chr2 (14 HSPs)
chr2 (166-301)||(22848043-22848180)
chr2 (178-323)||(10722020-10722169)
chr2 (166-261)||(29109040-29109135)
chr2 (166-266)||(5526429-5526529)
chr2 (176-300)||(30906677-30906803)
chr2 (166-271)||(3689975-3690078)
chr2 (166-261)||(37630543-37630636)
chr2 (166-324)||(33036855-33037010)
chr2 (178-256)||(28199803-28199881)
chr2 (199-265)||(30340615-30340681)
chr2 (178-301)||(44018784-44018904)
chr2 (178-234)||(27866833-27866889)
chr2 (237-293)||(4240972-4241030)
chr2 (198-298)||(4638408-4638508)
[»] chr3 (15 HSPs)
chr3 (166-339)||(779297-779470)
chr3 (166-301)||(28550656-28550793)
chr3 (166-330)||(44471230-44471395)
chr3 (166-270)||(23659597-23659703)
chr3 (176-266)||(26757818-26757908)
chr3 (174-271)||(44681863-44681963)
chr3 (170-324)||(33231323-33231479)
chr3 (205-330)||(44285795-44285922)
chr3 (191-277)||(54246671-54246760)
chr3 (166-250)||(46892799-46892883)
chr3 (221-271)||(47831144-47831194)
chr3 (176-298)||(11503159-11503283)
chr3 (166-217)||(26918366-26918415)
chr3 (237-298)||(27524276-27524339)
chr3 (166-270)||(30554408-30554512)
[»] chr4 (10 HSPs)
chr4 (170-330)||(42141457-42141616)
chr4 (166-335)||(19681871-19682042)
chr4 (181-271)||(8606002-8606092)
chr4 (166-267)||(53393026-53393128)
chr4 (190-293)||(13207233-13207339)
chr4 (234-296)||(38388184-38388248)
chr4 (173-266)||(23107779-23107873)
chr4 (166-212)||(39838950-39838996)
chr4 (173-250)||(24466204-24466281)
chr4 (234-298)||(28319137-28319201)
[»] chr8 (13 HSPs)
chr8 (166-293)||(9040625-9040754)
chr8 (166-293)||(32322012-32322142)
chr8 (166-301)||(16570698-16570835)
chr8 (166-330)||(3767467-3767629)
chr8 (166-300)||(3555255-3555389)
chr8 (199-295)||(25343954-25344052)
chr8 (166-296)||(25455973-25456105)
chr8 (190-275)||(9505267-9505350)
chr8 (166-296)||(25808126-25808258)
chr8 (197-301)||(20860216-20860322)
chr8 (196-271)||(37379904-37379978)
chr8 (233-298)||(7956187-7956252)
chr8 (236-268)||(34760694-34760726)
[»] chr5 (5 HSPs)
chr5 (166-275)||(1498058-1498167)
chr5 (190-301)||(17770449-17770562)
chr5 (231-322)||(20665646-20665739)
chr5 (166-251)||(7239167-7239252)
chr5 (166-251)||(7244343-7244428)
[»] scaffold0564 (1 HSPs)
scaffold0564 (166-275)||(6516-6624)
[»] scaffold0590 (1 HSPs)
scaffold0590 (166-261)||(8380-8474)
[»] scaffold0070 (2 HSPs)
scaffold0070 (170-296)||(13963-14091)
scaffold0070 (176-296)||(33946-34068)
[»] chr1 (8 HSPs)
chr1 (166-301)||(32678293-32678429)
chr1 (176-341)||(8414346-8414512)
chr1 (234-298)||(11620191-11620255)
chr1 (166-271)||(11911798-11911901)
chr1 (233-298)||(16584711-16584776)
chr1 (211-266)||(4919659-4919714)
chr1 (235-298)||(25787364-25787426)
chr1 (166-277)||(27320343-27320453)
[»] scaffold0002 (1 HSPs)
scaffold0002 (174-339)||(344152-344314)
[»] scaffold1194 (1 HSPs)
scaffold1194 (221-330)||(2354-2465)
[»] scaffold0879 (1 HSPs)
scaffold0879 (173-250)||(469-546)


Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 49124277 - 49124611
Alignment:
Q  18 cttgcttgtgttctttcactcattttggaacagcttccctgacacatactttctagaatttaagtttttaaatcattacttatactggctccttctattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124277 cttgcttgtgttctttcactcattttggaacagcttccctgacacatactttctagaatttaagtttttaaatcattacttatactggctccttctattt 49124376  T
Q  118 ttataagattactttacaaaaaagttttgtccctcctaaatataagagtatccctcct----cacacacactcatcattaagctcaaaattaaagtccaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||| |||||||||||||||||||||||||||    
T  49124377 ttataagattactttacaaaaaagttttgtccctcctaaatataagagtatccctcctcacacacacacacttatcattaagctcaaaattaaagtccaa 49124476  T
Q  214 catagattactccttagttcattcactttctcccatcatcatctcatctcatcactcacactattttatttctactaaaatagaacaccggctgctagtc 313  Q
    |||| |||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49124477 cataaattactccttagttcattcactttctcccatca-----tcatctcatcactcacactattttatttctactaaaatagaacaccggctgctagtc 49124571  T
Q  314 acacctaacccgtcgttgctcgccgctgctaaaatcgttc 353  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  49124572 acacctaacccgtcgttgctcgtcgctgctaaaatcgttc 49124611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 173 - 330
Target Start/End: Complemental strand, 25545173 - 25545014
Alignment:
Q  173 cctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactc-- 270  Q
    ||||||| ||||| || |||||||||||||||||||  ||||||| | |||||| || |||||||||||||||||| || ||||||||||||||||||      
T  25545173 cctcacatacacttatgattaagctcaaaattaaaggtcaacataaaatactccataattcattcactttctcccaacaccatctcatctcatcactcca 25545074  T
Q  271 acactattttatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgtt 330  Q
    || ||||||| ||||||||||||  ||||||  || |||||||||||||||||| |||||    
T  25545073 accctattttgtttctactaaaaatgaacactagccgctagtcacacctaacccatcgtt 25545014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 173 - 293
Target Start/End: Original strand, 31136359 - 31136481
Alignment:
Q  173 cctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcac 272  Q
    |||| |||||| |||| |||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| |||||||||| ||||||||||||||    
T  31136359 cctcgcacacattcataattaagctcaaaattaaagtccaacataaaatactccttaattcattcactttctcctatcatcatcttatctcatcactcac 31136458  T
Q  273 a--ctattttatttctactaaaa 293  Q
    |  |||||  |||||||||||||    
T  31136459 actctattccatttctactaaaa 31136481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 12471677 - 12471573
Alignment:
Q  196 ctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcacactattttatttctactaaaata 295  Q
    |||||||||||||| || |||| | |||||||| ||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |    
T  12471677 ctcaaaattaaagttcaccataaaatactcctttgtttactcactttctcccatcatcatctcatctcatcactcactctattttgtttctactaaaaaa 12471578  T
Q  296 gaaca 300  Q
    |||||    
T  12471577 gaaca 12471573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 166 - 335
Target Start/End: Original strand, 48070827 - 48070994
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||| ||||||||||| || ||||| |||||||||||||||||||||| | |||| |||| ||||||||||||||  |||| |||||| |||||||    
T  48070827 tatccctcttcacacacacttatgattaatctcaaaattaaagtccaacataaaatacttcttaattcattcactttctttcatcctcatcttatctcat 48070926  T
Q  266 cactcacactattttatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcg 335  Q
    ||  |||  |||||  |||||||||||| |||||||  || || | ||||||||||| | ||||| ||||    
T  48070927 ca--cactttatttcgtttctactaaaaaagaacactagccgccattcacacctaactcatcgttcctcg 48070994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 32971453 - 32971577
Alignment:
Q  176 cacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactc--aca 273  Q
    |||||||||| || |||| ||||||||||||||||||||||| | ||||| ||| | ||||||| | || | |||||||||||||||||||||||  ||     
T  32971453 cacacacacttatgattaggctcaaaattaaagtccaacataaactactctttaatccattcacctacttcaatcatcatctcatctcatcactcaaact 32971552  T
Q  274 ctattttatttctactaaaatagaa 298  Q
    ||||||||||||| |||||| ||||    
T  32971553 ctattttatttcttctaaaaaagaa 32971577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 35738096 - 35738005
Alignment:
Q  178 cacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactc 270  Q
    |||||||| || |||| || |||||||||| ||||||||| | ||||||||| | ||||||||| ||||||||||||||||||||||||||||    
T  35738096 cacacacttatgattaggcccaaaattaaattccaacataaaatactccttaatccattcactt-ctcccatcatcatctcatctcatcactc 35738005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 2502024 - 2501930
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcat 260  Q
    |||||||||||| ||||||| || |||||||| ||||||| ||| ||||||| | |||| | || ||||||| ||||||||||||||||||||||    
T  2502024 tatccctcctcatacacacttatgattaagctaaaaattacagtgcaacataaaatacttcataattcattccctttctcccatcatcatctcat 2501930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 12470186 - 12470103
Alignment:
Q  178 cacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatc 261  Q
    |||||||| || ||| | |||||||||||||||||||||| | ||||| ||  |||||||||| ||||||||||||||||||||    
T  12470186 cacacacttatgattcaactcaaaattaaagtccaacataaaatactctttgattcattcactctctcccatcatcatctcatc 12470103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 2923125 - 2923191
Alignment:
Q  190 attaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatc 256  Q
    |||| ||||||||||||||||||||||| |  ||| |||| |||||||||||||||||| |||||||    
T  2923125 attaggctcaaaattaaagtccaacataaaaaactacttaattcattcactttctcccaccatcatc 2923191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 39571718 - 39571668
Alignment:
Q  221 tactccttagttcattcactttctcccatcatcatctcatctcatcactca 271  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||||||||    
T  39571718 tactcctgaattcattcactttctcctatcatcatctcatctcatcactca 39571668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 3996906 - 3996813
Alignment:
Q  178 cacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactca 271  Q
    |||||||| || |||| || ||||||||||||| | |||| | |||| ||||  |||||||||||||| | |||||||||||| ||||||||||    
T  3996906 cacacacttatgattatgcccaaaattaaagtcaagcataaaatacttcttaagtcattcactttctctcgtcatcatctcatttcatcactca 3996813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 324
Target Start/End: Complemental strand, 12012919 - 12012751
Alignment:
Q  160 taagagtatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctccc-atcatc--atc 256  Q
    ||||| |||||||||| | ||||| | || |||||| | ||||||||||  ||||||  | |||||  || ||||||||||||||||| ||||||  |||    
T  12012919 taagattatccctcct-atacacatttatgattaagtttaaaattaaaggtcaacattaaatactctataattcattcactttctccccatcatctcatc 12012821  T
Q  257 tcatctcatcactcacac--tattttatttctactaaaatagaacaccggctgctagtcacacctaaccc 324  Q
    |||||| |||||||||||  |||||  ||||||||||||  ||||||  || |||||||| |||||||||    
T  12012820 tcatcttatcactcacactatatttcgtttctactaaaaacgaacactagccgctagtcatacctaaccc 12012751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 44523645 - 44523594
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacata 217  Q
    |||| ||||||||||||||| || |||| |||||||||||||||||||||||    
T  44523645 tatcgctcctcacacacacttatgattatgctcaaaattaaagtccaacata 44523594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 48638265 - 48638204
Alignment:
Q  200 aaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatc 261  Q
    |||||||||| ||||||| | ||||| ||| |||||||||||||| || |||||||||||||    
T  48638265 aaattaaagttcaacataaaatactctttaattcattcactttcttccttcatcatctcatc 48638204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 12470950 - 12470899
Alignment:
Q  198 caaaattaaagtccaacatagattactccttagttcattcactttctcccat 249  Q
    ||||||||||||||| |||| | ||||||||  |||||||||||||||||||    
T  12470950 caaaattaaagtccaccataaaatactccttgattcattcactttctcccat 12470899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 2197575 - 2197515
Alignment:
Q  235 ttcactttctcccatcatcatctcatctcatcactc--acactattttatttctactaaaa 293  Q
    |||||||||| || | ||||||||||||||||||||  || |||||| |||||||||||||    
T  2197575 ttcactttcttccgttatcatctcatctcatcactcagactctatttcatttctactaaaa 2197515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 45595597 - 45595683
Alignment:
Q  212 aacatagattactccttagttcattcactttctcccatcatcatctcatctcatca---ctcaca--ctattttatttctactaaaa 293  Q
    |||||| | ||||||||  || ||||||||||||| |||||||||| |||||||||   ||||||  ||||||| ||||||||||||    
T  45595597 aacataaaatactccttgatttattcactttctcctatcatcatcttatctcatcatccctcacattctattttgtttctactaaaa 45595683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 46265196 - 46265149
Alignment:
Q  251 atcatctcatctcatcactc--acactattttatttctactaaaatag 296  Q
    ||||||||||||||||||||  || |||||| ||||||||||||||||    
T  46265196 atcatctcatctcatcactcaaactctatttcatttctactaaaatag 46265149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 166 - 334
Target Start/End: Original strand, 11846453 - 11846623
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||||||||||    
T  11846453 tatccctcctcacacacacttatgattaagctcaaaattaaagtccaacatacaatactccttaattcatccactttcttccatcatcatctcatctcat 11846552  T
Q  266 cactcac--actattttatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctc 334  Q
    | |||||   ||||||  ||||||||||||  ||||||  || |  ||||||||||||||| |||||||||    
T  11846553 cgctcacggtctatttcgtttctactaaaaaggaacactagccgtcagtcacacctaacccatcgttgctc 11846623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 9826950 - 9827055
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    ||||||||||||||||| || || ||||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||    
T  9826950 tatccctcctcacacacgcttatgattaagctcaatattaaagtccaacataaaatactccttaattcattcactttctcccatcatcatctcatctcat 9827049  T
Q  266 cactca 271  Q
    ||||||    
T  9827050 cactca 9827055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 166 - 301
Target Start/End: Original strand, 11971623 - 11971760
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||||||||||    
T  11971623 tatccctcctcacacacacttatgattaatctcaaaattaaagtccaacataaaatactccttaattcatccactttcttccatcatcatctcatctcat 11971722  T
Q  266 cactcac--actattttatttctactaaaatagaacac 301  Q
    | |||||   |||| | ||||||||||||| |||||||    
T  11971723 ccctcacggtctatatcatttctactaaaaaagaacac 11971760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 166 - 324
Target Start/End: Original strand, 23300630 - 23300790
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||||||| ||||||| || ||||| |||||||||||||||||||||| | ||||||||| ||| |||||||| ||||||||||||||||||||||    
T  23300630 tatccctcctcatacacacttatgattaaactcaaaattaaagtccaacataaaatactccttaattctttcactttttcccatcatcatctcatctcat 23300729  T
Q  266 cactcaca--ctattttatttctactaaaatagaacaccggctgctagtcacacctaaccc 324  Q
    ||||||||  ||||||  |||| |||| || |||||||  |  |||| |||||||||||||    
T  23300730 cactcacattctatttcgtttccactataaaagaacactagtcgctactcacacctaaccc 23300790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 2454082 - 2453971
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatc--atctcatctc 263  Q
    |||| ||||||||| ||||  || | ||||||||| |||||||||||||||| | || | |||| |||||||||||||||||||||||  ||||||||||    
T  2454082 tatcgctcctcacaaacacctatgaataagctcaagattaaagtccaacataaaatatttcttaattcattcactttctcccatcatcatatctcatctc 2453983  T
Q  264 atcactcacact 275  Q
    ||||||||||||    
T  2453982 atcactcacact 2453971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 276
Target Start/End: Original strand, 1208771 - 1208881
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||| ||||||||||| ||||||| || |||||||||||| || |||| | |||| |||| ||||||||||||| | ||||||||||||| |||||    
T  1208771 tatccctcttcacacacacttatcattaggcccaaaattaaagttcagcataaaatactacttaattcattcactttccctcatcatcatctcaactcat 1208870  T
Q  266 cactcacacta 276  Q
    | |||| ||||    
T  1208871 ccctcaaacta 1208881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 301
Target Start/End: Complemental strand, 26186624 - 26186542
Alignment:
Q  221 tactccttagttcattcactttctcccatcatcatctcatctcatcactcaca--ctattttatttctactaaaatagaacac 301  Q
    ||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||  ||||||| |||||||||||| |||||||    
T  26186624 tactctttaattcattcactttctctcatcatcatctaatctcatcactcacactctattttgtttctactaaaaaagaacac 26186542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 261
Target Start/End: Complemental strand, 7176460 - 7176365
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatc 261  Q
    |||| ||||||||| ||||| || ||||||||||||| |||||||||||||| | || |||||| |||||| | |||||| ||| |||||||||||    
T  7176460 tatctctcctcacaaacacttatgattaagctcaaaactaaagtccaacataaaatattccttaattcatttattttctctcataatcatctcatc 7176365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 5416303 - 5416370
Alignment:
Q  231 ttcattcactttctcccatcatcatctcatctcatcactcacactattttatttctactaaaatagaa 298  Q
    ||||||||||||||| |||||||||||||||| |||| ||| ||||||| |||  |||||||| ||||    
T  5416303 ttcattcactttctctcatcatcatctcatctaatcattcagactatttcattattactaaaaaagaa 5416370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 20722497 - 20722575
Alignment:
Q  176 cacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatca 254  Q
    |||||||||| || |||| |  ||||||||||| |||||||| |||||| |||| | |||||||||||| |||||||||    
T  20722497 cacacacacttatgattagggccaaaattaaagcccaacataaattacttcttaatgcattcactttctgccatcatca 20722575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 26880016 - 26880074
Alignment:
Q  198 caaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatc 256  Q
    |||||||||||  ||||||| | ||||| ||| | ||||||||||||||||||||||||    
T  26880016 caaaattaaagctcaacataaaatactcattaatccattcactttctcccatcatcatc 26880074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 166 - 301
Target Start/End: Complemental strand, 22848180 - 22848043
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||||||||||||||| || |||||||||||| |||||| |||||||| | |||||| |  |||||||||||||||||||||||||||||||||||    
T  22848180 tatccctcctcacacacacttatgattaagctcaaagttaaaggccaacataaaatactccattattcattcactttctcccatcatcatctcatctcat 22848081  T
Q  266 cactcacac--tattttatttctactaaaatagaacac 301  Q
    |||||||||  |||||| ||| |||| ||| |||||||    
T  22848080 cactcacactttattttgtttatacttaaaaagaacac 22848043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 178 - 323
Target Start/End: Original strand, 10722020 - 10722169
Alignment:
Q  178 cacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttc--attcactttctcccatcatcatctcatctcatcactcac--a 273  Q
    |||||||| || |||||||||||||||||||||||||||| | ||||||||| |||  |||||||||||||||||||||||||||||||| ||||||       
T  10722020 cacacacttatgattaagctcaaaattaaagtccaacataaaatactccttaattcatattcactttctcccatcatcatctcatctcattactcacggt 10722119  T
Q  274 ctattttatttctactaaaatagaacaccggctgctagtcacacctaacc 323  Q
    ||||||  |||||||||||| |||||||  || ||  |||||||||||||    
T  10722120 ctatttcgtttctactaaaaaagaacactagccgcaggtcacacctaacc 10722169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 166 - 261
Target Start/End: Complemental strand, 29109135 - 29109040
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatc 261  Q
    |||||| ||||||||||| | || |||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||||||||||||    
T  29109135 tatcccccctcacacacaattataattaagctcaaaattaaagtccaacataaaatactccttaattcattcactttctcctatcatcatctcatc 29109040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 5526429 - 5526529
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||||| ||||||||| || ||||| |||||||||||||||||||||| | ||||||||| ||||||||||||||  |||||||||| ||||||||    
T  5526429 tatccctccttacacacacttatgattaaactcaaaattaaagtccaacataaaatactccttaattcattcactttctgtcatcatcatcacatctcat 5526528  T
Q  266 c 266  Q
    |    
T  5526529 c 5526529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 30906803 - 30906677
Alignment:
Q  176 cacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcaca-- 273  Q
    |||||||| | || |||||||||||||||||||| ||||||| | ||||||||| |||||||||||||  ||||||||||| ||| ||||||||||||      
T  30906803 cacacacagttatgattaagctcaaaattaaagttcaacataaaatactccttaattcattcactttcgtccatcatcatcccatttcatcactcacact 30906704  T
Q  274 ctattttatttctactaaaatagaaca 300  Q
    ||||||  |||||||||||| ||||||    
T  30906703 ctatttcgtttctactaaaaaagaaca 30906677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 3690078 - 3689975
Alignment:
Q  166 tatccctcctc--acacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctc 263  Q
    |||||||||||  ||||||||| || ||||||||||||||||||||||||| || | ||||||||    ||||||||||||| |||||||||||||||||    
T  3690078 tatccctcctcgcacacacacttatgattaagctcaaaattaaagtccaacgtaaaatactcctt----cattcactttctctcatcatcatctcatctc 3689983  T
Q  264 atcactca 271  Q
    ||||||||    
T  3689982 atcactca 3689975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 37630543 - 37630636
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatc 261  Q
    |||||||||||||||||  | || |||||||||||||||||||||||||||  | |||| |||| ||||||||||||||| ||||||| |||||||    
T  37630543 tatccctcctcacacac--ttatgattaagctcaaaattaaagtccaacatcaaatacttcttaattcattcactttctctcatcatcgtctcatc 37630636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 166 - 324
Target Start/End: Complemental strand, 33037010 - 33036855
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    ||||||||||||||||||   || |||||||||||||||||||  ||||||| | || ||| || ||||||  |||||||||||||||||||||||        
T  33037010 tatccctcctcacacacatctatgattaagctcaaaattaaaggacaacatataatattccataattcatttgctttctcccatcatcatctcatc---- 33036915  T
Q  266 cactcacact--attttatttctactaaaatagaacaccggctgctagtcacacctaaccc 324  Q
     ||| |||||  ||||| |||||||||||| | |||||  || ||| ||||||||||||||    
T  33036914 -acttacactttattttgtttctactaaaaaataacactagccgctggtcacacctaaccc 33036855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 28199803 - 28199881
Alignment:
Q  178 cacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatc 256  Q
    |||||||| || |||| ||  ||||||||||||||||||| | ||||||||| | ||||||||||||||||||||||||    
T  28199803 cacacacttatgattaggcctaaaattaaagtccaacatataatactccttaatccattcactttctcccatcatcatc 28199881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 30340615 - 30340681
Alignment:
Q  199 aaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    ||||||||||| ||||||| | ||||| ||  ||||||||||||||||||| |||||| ||||||||    
T  30340615 aaaattaaagttcaacataaaatactcttttattcattcactttctcccattatcatcacatctcat 30340681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 301
Target Start/End: Complemental strand, 44018904 - 44018784
Alignment:
Q  178 cacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcacac--t 275  Q
    |||||||| || | |||| ||||||||||||||||||||| | || | |||| ||| ||| ||||||||||  |||||||     ||||||||||||  |    
T  44018904 cacacacttatgaataagttcaaaattaaagtccaacataaaatatttcttaattcgttcgctttctcccaatatcatct-----catcactcacactgt 44018810  T
Q  276 attttatttctactaaaatagaacac 301  Q
    ||||||||||| |||||| |||||||    
T  44018809 attttatttctgctaaaaaagaacac 44018784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 27866833 - 27866889
Alignment:
Q  178 cacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttca 234  Q
    |||||||| || ||||| |||||||||||||||||||||| | ||||||||| ||||    
T  27866833 cacacacttatgattaatctcaaaattaaagtccaacataaaatactccttaattca 27866889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 4240972 - 4241030
Alignment:
Q  237 cactttctcccatcatcatctcatctcatcactca--cactattttatttctactaaaa 293  Q
    |||||||||| ||||||||||||||||||| ||||  | ||||||| ||||||||||||    
T  4240972 cactttctcctatcatcatctcatctcatctctcacgctctattttgtttctactaaaa 4241030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 4638408 - 4638508
Alignment:
Q  198 caaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcacactattttatttctactaaaataga 297  Q
    ||||||||||||||||| || | ||||  | | | |||||||||| ||  ||| |||||||||||||| | ||| ||| ||| ||||||||||||| |||    
T  4638408 caaaattaaagtccaacttaaactacttttcaatccattcactttttctaatcctcatctcatctcataagtcagactctttcatttctactaaaaaaga 4638507  T
Q  298 a 298  Q
    |    
T  4638508 a 4638508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 166 - 339
Target Start/End: Complemental strand, 779470 - 779297
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||| ||||||||| ||||| || ||||| ||||||||||||| |||||||| | |||| | || |||| ||||||||| ||||||||||||||||||||    
T  779470 tatcactcctcacatacacttatgattaaactcaaaattaaaggccaacataaaatacttcataattcactcactttcttccatcatcatctcatctcat 779371  T
Q  266 cactcacactattttatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgccgc 339  Q
    ||||||| ||||||  |||||| || || |||||||  || |||||||||||||||||| ||||| ||| ||||    
T  779370 cactcactctatttcgtttctaatagaaaagaacactagccgctagtcacacctaacccatcgttcctcaccgc 779297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 166 - 301
Target Start/End: Original strand, 28550656 - 28550793
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||| ||||||||||||||| || ||||| ||||||||||||||||||| || | |||| || | |||||||||||||||||||||||||||||||||||    
T  28550656 tatctctcctcacacacacttatgattaaactcaaaattaaagtccaacgtaaaatacttctcaattcattcactttctcccatcatcatctcatctcat 28550755  T
Q  266 cactcaca--ctattttatttctactaaaatagaacac 301  Q
    ||||||||  ||||||  |||||| ||||| |||||||    
T  28550756 cactcacattctatttcgtttctattaaaaaagaacac 28550793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 330
Target Start/End: Original strand, 44471230 - 44471395
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||||||| ||||||| || ||||||||||||||||||| | |||||| | |||||| || ||||||||||||||||||| ||||||||||| |||    
T  44471230 tatccctcctcaaacacacttatgattaagctcaaaattaaaggctaacataaaatactccataattcattcactttctcccattatcatctcatcacat 44471329  T
Q  266 cactcaca--ctattttatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgtt 330  Q
    ||||||||  ||||||  || ||||||||| | |||||  || ||||||||| |||||||| |||||    
T  44471330 cactcacactctatttcgttactactaaaa-ataacactagccgctagtcacccctaacccatcgtt 44471395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 23659597 - 23659703
Alignment:
Q  166 tatccctcctcacacacactc--atcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctc 263  Q
    ||||||||||||||||||| |  || |||||||||||||||||||||||||||| | ||||||||| |||||||||||||| | |||||||||| |||||    
T  23659597 tatccctcctcacacacacacttataattaagctcaaaattaaagtccaacataaaatactccttaattcattcactttctactatcatcatcttatctc 23659696  T
Q  264 atcactc 270  Q
    |||||||    
T  23659697 atcactc 23659703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 26757818 - 26757908
Alignment:
Q  176 cacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatc 266  Q
    |||||||||| || |||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  26757818 cacacacacttatgattaagctcaaaattaaagttcaacataaaatactccttaattcattcactttctctcatcatcatctcatctcatc 26757908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 44681963 - 44681863
Alignment:
Q  174 ctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcat---catctcatctcatcactc 270  Q
    |||||||||||| || |||||||||||||||||||||||||||| | ||||||||| |||||| |||||||||||||||   ||||||||||||||||||    
T  44681963 ctcacacacacttatgattaagctcaaaattaaagtccaacataaaatactccttaattcatttactttctcccatcatcatcatctcatctcatcactc 44681864  T
Q  271 a 271  Q
    |    
T  44681863 a 44681863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 170 - 324
Target Start/End: Complemental strand, 33231479 - 33231323
Alignment:
Q  170 cctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcact 269  Q
    |||||||| | ||||| || |||||||||||||||||||  || |||| | ||||||  | ||||||||||||||| |||||||||||||||||||| ||    
T  33231479 cctcctcatatacacttatgattaagctcaaaattaaaggtcagcataaaatactccacaattcattcactttctcacatcatcatctcatctcatcgct 33231380  T
Q  270 caca--ctattttatttctactaaaatagaacaccggctgctagtcacacctaaccc 324  Q
    ||||  ||||||  |||||  ||||| |||| ||  || ||||||||||||||||||    
T  33231379 cacactctatttcgtttctggtaaaaaagaatactagccgctagtcacacctaaccc 33231323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 205 - 330
Target Start/End: Original strand, 44285795 - 44285922
Alignment:
Q  205 aaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcaca--ctattttatttctactaaaatagaacacc 302  Q
    |||| |||||||| | |||||| || ||||||||||||||||||||||| ||||||||||||| |||||  ||||||  |||||||||||| ||||||      
T  44285795 aaaggccaacataaaatactccataattcattcactttctcccatcatcgtctcatctcatcattcacactctatttcgtttctactaaaaaagaacatt 44285894  T
Q  303 ggctgctagtcacacctaacccgtcgtt 330  Q
     || |||| | ||||||||||| |||||    
T  44285895 agccgctacttacacctaacccatcgtt 44285922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 54246671 - 54246760
Alignment:
Q  191 ttaagctcaaaattaaagtccaacatagattactccttagtt---cattcactttctcccatcatcatctcatctcatcactcacactat 277  Q
    ||||||||||||||||||||||||||| | ||||||||| |    ||||||||||||| | ||||||||||||||||||| |||||||||    
T  54246671 ttaagctcaaaattaaagtccaacataaaatactccttattaatacattcactttctctcgtcatcatctcatctcatcagtcacactat 54246760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 46892799 - 46892883
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatc 250  Q
    |||||||| ||||||||||| |  ||| | |||||||||||||| ||||||| | ||||||||| ||||||||||||||| ||||    
T  46892799 tatccctcatcacacacacttacgattgatctcaaaattaaagttcaacataaaatactccttaattcattcactttctctcatc 46892883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 47831194 - 47831144
Alignment:
Q  221 tactccttagttcattcactttctcccatcatcatctcatctcatcactca 271  Q
    ||||||||| ||| ||||||||||||||||||||||||| || ||||||||    
T  47831194 tactccttacttctttcactttctcccatcatcatctcaccttatcactca 47831144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 298
Target Start/End: Complemental strand, 11503283 - 11503159
Alignment:
Q  176 cacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactc--aca 273  Q
    |||||||||| || |||| |  ||||||||||| |||||||| | |||| | || | ||||||||| ||| |||  | |||||||||||||||||  ||     
T  11503283 cacacacacttatgattatgtccaaaattaaagcccaacataaaatactacataatccattcacttcctctcatactaatctcatctcatcactcagact 11503184  T
Q  274 ctattttatttctactaaaatagaa 298  Q
    |||||| ||||||||||||| ||||    
T  11503183 ctatttcatttctactaaaaaagaa 11503159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 26918415 - 26918366
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacata 217  Q
    |||||||||||||||||  | || ||||||||||||||||||||||| ||||    
T  26918415 tatccctcctcacacac--ttataattaagctcaaaattaaagtccagcata 26918366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 27524276 - 27524339
Alignment:
Q  237 cactttctcccatcatcatctcatctcatcactc--acactattttatttctactaaaatagaa 298  Q
    |||||| ||||||||||||| |||||||||||||  || |||||| |||||| |||||| ||||    
T  27524276 cactttttcccatcatcatcgcatctcatcactctaactctatttcatttcttctaaaaaagaa 27524339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 30554512 - 30554408
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||| |||||||||||  | ||| ||||||||||| || | ||||| | | |||||  |  || |||||||||||||||||||| || || |||||    
T  30554512 tatccctcatcacacacacttgtgattgagctcaaaattcaaatacaacaaaaaatactcaatgatttattcactttctcccatcatcgtcacaactcat 30554413  T
Q  266 cactc 270  Q
    |||||    
T  30554412 cactc 30554408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 170 - 330
Target Start/End: Original strand, 42141457 - 42141616
Alignment:
Q  170 cctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcact 269  Q
    |||||||||||||||| || ||||| |||||||||||||||||||||| | ||||||||| |  |||||||||||| ||||||||||||||||||| |||    
T  42141457 cctcctcacacacacttatgattaatctcaaaattaaagtccaacataaaatactccttaatg-attcactttctctcatcatcatctcatctcattact 42141555  T
Q  270 cacactattttatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgtt 330  Q
    ||| ||||||  |||||||||||| |||| ||  ||  || |||||||||||||| |||||    
T  42141556 cactctatttcttttctactaaaaaagaatactagccactggtcacacctaacccatcgtt 42141616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 335
Target Start/End: Complemental strand, 19682042 - 19681871
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    ||||||| |||||| ||||| |  ||||||||||||||||||||| |||||| | ||||||||| || ||||||  ||||||||||||||||||||| ||    
T  19682042 tatcccttctcacatacacttacgattaagctcaaaattaaagtcaaacataaaatactccttaatttattcacggtctcccatcatcatctcatctaat 19681943  T
Q  266 cact--cacactattttatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcg 335  Q
    ||||  ||||||||||  |||||||||||| |||||||  || |  |||| |||||||||| ||||| ||||    
T  19681942 cacttacacactatttcgtttctactaaaaaagaacactagccgtcagtctcacctaacccatcgttcctcg 19681871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 8606092 - 8606002
Alignment:
Q  181 acactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactca 271  Q
    ||||| || |||| || |||||||||||||||||||| | ||||||||| |||||||||||||||| |||||||| |||||||||||||||    
T  8606092 acacttattattaggcccaaaattaaagtccaacataaaatactccttaattcattcactttctcctatcatcatttcatctcatcactca 8606002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 53393128 - 53393026
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatc-tcatctca 264  Q
    |||||||| |||||||||||  | |||||||||||||||||||  ||||||| | | |||| || |||||||||||||||||||| ||||| ||||||||    
T  53393128 tatccctcttcacacacacttctgattaagctcaaaattaaaggtcaacataaaatgctccataattcattcactttctcccatcgtcatcatcatctca 53393029  T
Q  265 tca 267  Q
    |||    
T  53393028 tca 53393026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 13207339 - 13207233
Alignment:
Q  190 attaagctcaaaa-ttaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactc--acactattttatttct 286  Q
    ||||||||||||| |||||| |||||||| | ||||| ||| | |||||||||||| | |||||||||||||||||||||||  || |||||| ||||||    
T  13207339 attaagctcaaaaattaaagcccaacataaaatactcattaatccattcactttcttctatcatcatctcatctcatcactcagactctatttcatttct 13207240  T
Q  287 actaaaa 293  Q
    | |||||    
T  13207239 attaaaa 13207233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 38388184 - 38388248
Alignment:
Q  234 attcactttctcccatcatcatctcatctcatcactc--acactattttatttctactaaaatag 296  Q
    ||||||||||||| |||||||||||||||||||||||  || |||||| ||||||||||||||||    
T  38388184 attcactttctccaatcatcatctcatctcatcactcagactctatttcatttctactaaaatag 38388248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 23107873 - 23107779
Alignment:
Q  173 cctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatc-tcatctcatc 266  Q
    ||||||||| ||| ||  ||| ||||||||||||||||||||||| | ||||  ||| | |||||||||||||  ||||||||| ||||||||||    
T  23107873 cctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctctaatcatcatcttcatctcatc 23107779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 39838996 - 39838950
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtcca 212  Q
    |||| ||||||||||||||| || ||||||||||| |||||||||||    
T  39838996 tatctctcctcacacacacttatgattaagctcaatattaaagtcca 39838950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 24466281 - 24466204
Alignment:
Q  173 cctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatc 250  Q
    ||||||||| ||| ||  ||| ||||||||||||||||||||||| | ||||  ||| | ||||||||||||| ||||    
T  24466281 cctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctctcatc 24466204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 28319201 - 28319137
Alignment:
Q  234 attcactttctcccatcatcatctcatctcatcactcacactattttatttctactaaaatagaa 298  Q
    |||||||||||| |||  |||||||||||||||| ||| ||| |||  |||||||||||| ||||    
T  28319201 attcactttctctcattttcatctcatctcatcagtcagactctttcttttctactaaaagagaa 28319137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 293
Target Start/End: Original strand, 9040625 - 9040754
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||||||||||||||| || |||| ||||||||||||||  ||| ||| | |||| |||| ||||||||||||||||||| |||||||||||||||    
T  9040625 tatccctcctcacacacacttatgattaggctcaaaattaaagctcaagataaaatactacttaattcattcactttctcccattatcatctcatctcat 9040724  T
Q  266 cactc--acactattttatttctactaaaa 293  Q
    |||||  || |||||| |||||||||||||    
T  9040725 cactcagactctatttcatttctactaaaa 9040754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 166 - 293
Target Start/End: Original strand, 32322012 - 32322142
Alignment:
Q  166 tatccctcctcacacacactcatcattaag-ctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctca 264  Q
    |||| ||||||||||||||| || |||||  ||||| |||||||||||||||| | ||||||||| |||||| ||||||||||||||||||||||| |||    
T  32322012 tatctctcctcacacacacttatgattaaaactcaagattaaagtccaacataaaatactccttaattcatttactttctcccatcatcatctcatgtca 32322111  T
Q  265 tcactcaca--ctattttatttctactaaaa 293  Q
    |||||||||  |||||| | |||||||||||    
T  32322112 tcactcacagtctatttcaattctactaaaa 32322142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 166 - 301
Target Start/End: Complemental strand, 16570835 - 16570698
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||||||||||||| | || ||||| |||||||||||| | ||| ||| | ||||||||| ||| |||||||||| |||||||||||||||||| |    
T  16570835 tatccctcctcacacacatttatgattaaactcaaaattaaaatacaatataaaatactccttaattcgttcactttctgccatcatcatctcatctcgt 16570736  T
Q  266 cactcaca--ctattttatttctactaaaatagaacac 301  Q
    ||||||||  ||||| | ||||||| |||| |||||||    
T  16570735 cactcacactctattctgtttctacgaaaaaagaacac 16570698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 166 - 330
Target Start/End: Complemental strand, 3767629 - 3767467
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    ||||||| |||||||||||| || ||||| |||||||||||||||||||||| | |  |||||| | ||||||||||||||||| |||||||||||||||    
T  3767629 tatcccttctcacacacact-atgattaaactcaaaattaaagtccaacataaaattatccttaatccattcactttctcccat-atcatctcatctcat 3767532  T
Q  266 cactcacactattttatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgtt 330  Q
    ||||||   ||||| ||||  ||||||| |||||||  ||    ||||||||||||||| |||||    
T  3767531 cactcagtgtatttcatttaaactaaaaaagaacactagccttcagtcacacctaacccatcgtt 3767467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 3555389 - 3555255
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    ||||||||||| |||||||| || ||| |||| ||||||||||| ||||||| | ||||| ||| | ||||||||||||| |||||| ||||||||||||    
T  3555389 tatccctcctcccacacact-atgatttagcttaaaattaaagttcaacataaaatactcattaat-cattcactttctctcatcattatctcatctcat 3555292  T
Q  266 cactc--acactattttatttctactaaaatagaaca 300  Q
    |||||  ||||||||| | ||||||||||| ||||||    
T  3555291 cactcacacactatttcacttctactaaaaaagaaca 3555255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 25344052 - 25343954
Alignment:
Q  199 aaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcacact--attttatttctactaaaata 295  Q
    |||||||||| |||||||| | |||| |||| | |||||||||||||||||||||||||||| |||||||||| |||  |||| |||||||||||||||    
T  25344052 aaaattaaagcccaacataaagtactacttaatccattcactttctcccatcatcatctcatgtcatcactcagactcgatttcatttctactaaaata 25343954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 296
Target Start/End: Complemental strand, 25456105 - 25455973
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||| ||||||||||| || | || || ||||||||||| ||| |||| | |||| |||| | |||||||||||| | |||||||| |||||||||    
T  25456105 tatccctcttcacacacacttatgagtatgcccaaaattaaagcccagcataaagtactacttaatccattcactttcttctatcatcatatcatctcat 25456006  T
Q  266 cactcacact--attttatttctactaaaatag 296  Q
    |||||| |||  |||| ||||||||||||||||    
T  25456005 cactcaaactcgatttcatttctactaaaatag 25455973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 9505267 - 9505350
Alignment:
Q  190 attaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcacact 275  Q
    |||||||||||||||||||| |||||||   ||||||||| ||||||||||||||||||||||||  | |||||||| ||||||||    
T  9505267 attaagctcaaaattaaagttcaacatatgatactccttaattcattcactttctcccatcatca--tgatctcatccctcacact 9505350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 296
Target Start/End: Complemental strand, 25808258 - 25808126
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||| ||||||||||| || | || ||  |||||||||| |   |||| | |||| |||| | |||||||||||||||||| |||||| |||||||    
T  25808258 tatccctcttcacacacacttatgagtatgcctaaaattaaagccgtgcataaagtactacttaatccattcactttctcccatcgtcatctaatctcat 25808159  T
Q  266 cactcacact--attttatttctactaaaatag 296  Q
    |||||| |||  |||| ||||||||||||||||    
T  25808158 cactcagactcgatttcatttctactaaaatag 25808126  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 20860322 - 20860216
Alignment:
Q  197 tcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcaca--ctattttatttctactaaaat 294  Q
    |||||||||||||| |||||| | ||||||||| |  |||||||||||| ||||||| |||||||| ||||| ||||  ||||||  ||| ||||||||     
T  20860322 tcaaaattaaagtcgaacataaaatactccttaatctattcactttctctcatcatcgtctcatctaatcacccacactctatttcttttatactaaaaa 20860223  T
Q  295 agaacac 301  Q
    |||||||    
T  20860222 agaacac 20860216  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 37379978 - 37379904
Alignment:
Q  196 ctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactca 271  Q
    ||||||||||||| | |||||| | | || |||| | |||||||||| ||| ||||||||||||||||||||||||    
T  37379978 ctcaaaattaaagcctaacataaaatgcttcttaatccattcactttttcc-atcatcatctcatctcatcactca 37379904  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 7956252 - 7956187
Alignment:
Q  233 cattcactttctcccatcatcatctcatctcatcactcacactattttatttctactaaaatagaa 298  Q
    ||||| ||||||| |||  |||||||||||||||| ||| ||| ||| ||||||||||||| ||||    
T  7956252 cattctctttctctcatattcatctcatctcatcagtcaaactctttgatttctactaaaaaagaa 7956187  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 34760726 - 34760694
Alignment:
Q  236 tcactttctcccatcatcatctcatctcatcac 268  Q
    ||||||||||| |||||||||||||||||||||    
T  34760726 tcactttctccgatcatcatctcatctcatcac 34760694  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 1498167 - 1498058
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    ||||||| ||| |||||||| || ||||||||||||||| ||||||||| || | ||||||||| | ||||||||||||||||||||||| |||||||||    
T  1498167 tatcccttctcgcacacacttatgattaagctcaaaattgaagtccaacctaaaatactccttaatacattcactttctcccatcatcatttcatctcat 1498068  T
Q  266 cactcacact 275  Q
    ||||||||||    
T  1498067 cactcacact 1498058  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 301
Target Start/End: Original strand, 17770449 - 17770562
Alignment:
Q  190 attaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcaca--ctattttatttcta 287  Q
    ||||||||||||||||||| |||||||| | ||||||||| |||||||||||  || |||| ||||||||||||| ||||||||  |||| | |||||||    
T  17770449 attaagctcaaaattaaagcccaacataaaatactccttaattcattcacttcatctcatcctcatctcatctcaccactcacactctatatcatttcta 17770548  T
Q  288 ctaaaatagaacac 301  Q
    |||||| |||||||    
T  17770549 ctaaaaaagaacac 17770562  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 20665646 - 20665739
Alignment:
Q  231 ttcattcactttctcccatcatcatctcatctcatcactcaca--ctattttatttctactaaaatagaacaccggctgctagtcacacctaac 322  Q
    |||||||||||||| || |||||||||||||||||||||||||  ||||||| |||||||||||| | |||||  ||  |||||||||||||||    
T  20665646 ttcattcactttcttccgtcatcatctcatctcatcactcacactctattttgtttctactaaaaaaaaacactagccactagtcacacctaac 20665739  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 7239252 - 7239167
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatca 251  Q
    |||| |||||||||  |||| || ||||||||||||| |||||||||||||| |  ||| |||| ||||||||||||||| |||||    
T  7239252 tatctctcctcacatgcacttatgattaagctcaaaactaaagtccaacataaaacacttcttacttcattcactttctctcatca 7239167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 7244428 - 7244343
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatca 251  Q
    |||| |||||||||  |||| || ||||||||||||| |||||||||||||| |  ||| |||| ||||||||||||||| |||||    
T  7244428 tatctctcctcacatgcacttatgattaagctcaaaactaaagtccaacataaaacacttcttacttcattcactttctctcatca 7244343  T

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Target: scaffold0564 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 6516 - 6624
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    ||||||| |||| ||||||| || ||||||||||||||||||||| || ||| | ||||| ||| |||||||||||||||||||||||||| ||||||||    
T  6516 tatcccttctcatacacacttatgattaagctcaaaattaaagtc-aatataaaatactctttaattcattcactttctcccatcatcatcccatctcat 6614  T
Q  266 cactcacact 275  Q
    || |||||||    
T  6615 cattcacact 6624  T

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Target: scaffold0590 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 8380 - 8474
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatc 261  Q
    ||||||||||||||||||||  | || || |||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||||||||    
T  8380 tatccctcctcacacacacttttgatcaaactcaaaattaaagtccaacataaat-actctttaattcattcactttctcccatcatcatctcatc 8474  T

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Target: scaffold0070 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 13963 - 14091
Alignment:
Q  170 cctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcact 269  Q
    |||| ||||||||||| || | || || ||||||||||| ||| |||| | |||| |||| | |||||||||||| ||||||||||||||||||||||||    
T  13963 cctcttcacacacacttatgagtatgcccaaaattaaagcccagcataaagtactacttaatccattcactttcttccatcatcatctcatctcatcact 14062  T
Q  270 cacact--attttatttctactaaaatag 296  Q
    || |||  |||| ||||||||||||||||    
T  14063 cagactcgatttcatttctactaaaatag 14091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 33946 - 34068
Alignment:
Q  176 cacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcacact 275  Q
    |||||||||| || | || || ||||||||||| |||||||| | |||| |||| | |||||||||||||||||||||||||||| |||||||| | |||    
T  33946 cacacacacttatgagtatgcccaaaattaaagcccaacataaagtactacttaatccattcactttctcccatcatcatctcatgtcatcacttagact 34045  T
Q  276 --attttatttctactaaaatag 296  Q
      |||| ||||||||||||||||    
T  34046 cgatttcatttctactaaaatag 34068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 301
Target Start/End: Complemental strand, 32678429 - 32678293
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcat 265  Q
    |||||||| | ||||||||| || ||||| ||||||||||||||| |||||| | ||||| ||| || ||||| |||||| |||||| ||||||||||||    
T  32678429 tatccctcataacacacacttatgattaaactcaaaattaaagtc-aacataaaatactcgttaatttattcattttctcacatcatgatctcatctcat 32678331  T
Q  266 cactcaca--ctattttatttctactaaaatagaacac 301  Q
    |||||| |  ||||||  |||||||||||| |||||||    
T  32678330 cactcatagtctatttcgtttctactaaaaaagaacac 32678293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 341
Target Start/End: Complemental strand, 8414512 - 8414346
Alignment:
Q  176 cacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcaca-- 273  Q
    ||||||||| ||  ||||| |||||||| |||||| |||| | || |||| ||| |||||||||||| | |||||||||||  |||||||||||||||      
T  8414512 cacacacacacacgattaaactcaaaatcaaagtcaaacaaaaat-actctttaattcattcactttttaccatcatcatcctatctcatcactcacact 8414414  T
Q  274 ctattttatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgccgctg 341  Q
    ||||||  |||||||||||| |||||||  |  | ||| |||||||||||| ||||| ||| ||||||    
T  8414413 ctatttcgtttctactaaaaaagaacactagtcgttagccacacctaacccatcgtttctcaccgctg 8414346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 11620191 - 11620255
Alignment:
Q  234 attcactttctcccatcatcatctcatctcatcactcacactattttatttctactaaaatagaa 298  Q
    ||||||||||||||||| |||||||||||||||| | ||||| ||| ||| ||||||||| ||||    
T  11620191 attcactttctcccatcttcatctcatctcatcagttacactctttcattcctactaaaaaagaa 11620255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 11911798 - 11911901
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtcc-aacatagattactccttagttcattcactttctcccatcatcatctcatctca 264  Q
    |||||||| |||| |||||| || |||||||||||||||||||||| |||||| | ||||  ||| || |||| |||||||||||||||   || |||||    
T  11911798 tatccctcatcacgcacacttatgattaagctcaaaattaaagtcccaacataaaatactgtttaatttattcgctttctcccatcatc---tcgtctca 11911894  T
Q  265 tcactca 271  Q
    |||||||    
T  11911895 tcactca 11911901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 16584776 - 16584711
Alignment:
Q  233 cattcactttctcccatcatcatctcatctcatcactcacactattttatttctactaaaatagaa 298  Q
    |||||||||||||  ||| |||||||||||||||| ||| ||||||| ||||||||| ||| ||||    
T  16584776 cattcactttctctaatcttcatctcatctcatcagtcagactatttcatttctacttaaaaagaa 16584711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 4919659 - 4919714
Alignment:
Q  211 caacatagattactccttagttcattcactttctcccatcatcatctcatctcatc 266  Q
    ||||||| | ||||||||  | ||||||||||||||| ||||||||||||||||||    
T  4919659 caacataaaatactccttgatccattcactttctcccttcatcatctcatctcatc 4919714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 25787364 - 25787426
Alignment:
Q  235 ttcactttctcccatcatcatctcatctcatcactcacactattttatttctactaaaatagaa 298  Q
    ||||||||||| |||| |||||||||||||||| ||| ||| ||| ||||||||||||| ||||    
T  25787364 ttcactttctctcatc-tcatctcatctcatcagtcagactctttcatttctactaaaaaagaa 25787426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 277
Target Start/End: Complemental strand, 27320453 - 27320343
Alignment:
Q  166 tatccctcctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctccc-atcatcatctcatctca 264  Q
    |||||||||||||||||  | || |||||| ||| |||||||| |||| ||| | |||||  || |||||||| ||| | || ||||||||||||||||     
T  27320453 tatccctcctcacacac--ttatgattaaggtcagaattaaagcccaatataaaatactctctaattcattcatttttttcctatcatcatctcatctct 27320356  T
Q  265 tcactcacactat 277  Q
    ||||||| |||||    
T  27320355 tcactcatactat 27320343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 174 - 339
Target Start/End: Complemental strand, 344314 - 344152
Alignment:
Q  174 ctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatcatcatctcatctcatcactcaca 273  Q
    |||||||||||  || ||| |||||||||||||||||||| ||| | || || ||| || ||||||||||| |||||||||||||||| | |||   ||     
T  344314 ctcacacacacatatgattcagctcaaaattaaagtccaatataaaatattcattaattaattcactttctgccatcatcatctcatcac-tcat--act 344218  T
Q  274 ctattttatttctactaaaatagaacaccggctgctagtcacacctaacccgtcgttgctcgccgc 339  Q
    ||||||  |||||||||||| |||||||  || || ||||||||||||||| ||||| ||| ||||    
T  344217 ctatttcgtttctactaaaaaagaacactagccgccagtcacacctaacccatcgttcctcaccgc 344152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 2465 - 2354
Alignment:
Q  221 tactccttagttcattcactttctcccatcatcatctcatctcatcactcaca--ctattttatttctactaaaatagaacaccggctgctagtcacacc 318  Q
    ||||||||| ||| |||||||||| |||||||||||||||||| |||||||||  ||||| | ||||||| |||| |||||||   | || |||||||||    
T  2465 tactccttaattcgttcactttctgccatcatcatctcatctcgtcactcacactctattctgtttctacgaaaaaagaacactaaccgccagtcacacc 2366  T
Q  319 taacccgtcgtt 330  Q
    |||||| |||||    
T  2365 taacccatcgtt 2354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 546 - 469
Alignment:
Q  173 cctcacacacactcatcattaagctcaaaattaaagtccaacatagattactccttagttcattcactttctcccatc 250  Q
    ||||||||| ||| ||  ||| ||||||||||||||||||||||| | ||||  ||| | ||||||||||||| ||||    
T  546 cctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctctcatc 469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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