View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_14 (Length: 361)
Name: NF6917_low_14
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 33250577 - 33250245
Alignment:
| Q |
15 |
acatcaacaagaggaaaattctacaggggaactacactctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250577 |
acatcaacaagaggaaaattctacaggggaactacactctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttatt |
33250478 |
T |
|
| Q |
115 |
agaggcattaggtgtatatctatctttttggaattcaactatattagtagtactttggtggtgttatttttggttatgacagttaacattttgcttttgg |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33250477 |
agaggcattaggtgtatatctatccttttggaattcaactatattagtagtactttggtggtgttatttttggttatgacagttaacattttccttttgg |
33250378 |
T |
|
| Q |
215 |
aattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaatgcatttccaaaatactgca |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250377 |
aattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaatgcatttccaaaatactgca |
33250278 |
T |
|
| Q |
315 |
aacttgttgacagtgctaggctctattgcacag |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
33250277 |
aacttgttgacagtgctaggctctattgcacag |
33250245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 33270749 - 33270417
Alignment:
| Q |
15 |
acatcaacaagaggaaaattctacaggggaactacactctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33270749 |
acatcaacaagaggaaaattctacaggggaactacactctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttatt |
33270650 |
T |
|
| Q |
115 |
agaggcattaggtgtatatctatctttttggaattcaactatattagtagtactttggtggtgttatttttggttatgacagttaacattttgcttttgg |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33270649 |
agaggcattaggtgtatatctatccttttggaattcaactatattagtagtactttggtggtgttatttttggttatgacagttaacattttccttttgg |
33270550 |
T |
|
| Q |
215 |
aattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaatgcatttccaaaatactgca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33270549 |
aattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaatgcatttccaaaatactgca |
33270450 |
T |
|
| Q |
315 |
aacttgttgacagtgctaggctctattgcacag |
347 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
33270449 |
aacttgttgacagtgctaggctctattgcacag |
33270417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 33301985 - 33301850
Alignment:
| Q |
211 |
ttggaattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaatgcatttccaaaatac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||| |
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| T |
33301985 |
ttggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatat |
33301886 |
T |
|
| Q |
311 |
tgcaaacttgttgacagtgctaggctctattgcaca |
346 |
Q |
| |
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|||||||||||||| | ||| || |||||||||||| |
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| T |
33301885 |
tgcaaacttgttgataatgccagactctattgcaca |
33301850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 33310277 - 33310153
Alignment:
| Q |
222 |
acaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaatgcatttccaaaatactgcaaacttgt |
321 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
33310277 |
acaggagagctatcatgacaaaaagggcagtaagggtgaaatcacaactggaatctcacaaaagatttgctaatgcatttccaaaatattgcgaacttgt |
33310178 |
T |
|
| Q |
322 |
tgacagtgctaggctctattgcaca |
346 |
Q |
| |
|
||||||||||||||| |||| |||| |
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| T |
33310177 |
tgacagtgctaggctatattacaca |
33310153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 33310465 - 33310362
Alignment:
| Q |
24 |
agaggaaaattctacaggggaactacactctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcatt |
123 |
Q |
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|
||||||||||| || | ||||||||| | | | ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| ||||||||||| |
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| T |
33310465 |
agaggaaaattataaaagggaactactcacccgaaagccttacagaattgtgctagttggtgtggtttgtgatggctatcttgctgttgttagaggcatt |
33310366 |
T |
|
| Q |
124 |
aggt |
127 |
Q |
| |
|
|||| |
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|
| T |
33310365 |
aggt |
33310362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 33302480 - 33302406
Alignment:
| Q |
53 |
ctcaaaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggt |
127 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
33302480 |
ctcaaaagccttatagaattgagctagttggtgtcgtttgtgatggttatcatgcagttattagaggcattaggt |
33302406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 30664358 - 30664435
Alignment:
| Q |
57 |
aaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggtgtatatc |
134 |
Q |
| |
|
||||| ||||| |||| | | |||||||||||||||||| || |||||||| ||||||||||||||||||||||||| |
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| T |
30664358 |
aaagcgttacaaaattaaacaagttggtgtggtttgtgacggcaatcttgcatttattagaggcattaggtgtatatc |
30664435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 30673038 - 30673115
Alignment:
| Q |
57 |
aaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggtgtatatc |
134 |
Q |
| |
|
||||| ||||| |||| | | |||||||||||||||||| || |||||||| ||||||||||||||||||||||||| |
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|
| T |
30673038 |
aaagcgttacaaaattaaacaagttggtgtggtttgtgacggcaatcttgcatttattagaggcattaggtgtatatc |
30673115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 30627368 - 30627445
Alignment:
| Q |
57 |
aaagccttacagaattgagctagttggtgtggtttgtgatggatatcttgcagttattagaggcattaggtgtatatc |
134 |
Q |
| |
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||||| ||||| |||| | | ||||||||||||||| || || |||||||| ||||||||||||||||||||||||| |
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| T |
30627368 |
aaagcgttacaaaattaaacaagttggtgtggtttgagacggcaatcttgcatttattagaggcattaggtgtatatc |
30627445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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