View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6917_low_15 (Length: 361)

Name: NF6917_low_15
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6917_low_15
NF6917_low_15
[»] chr1 (7 HSPs)
chr1 (14-273)||(2628184-2628443)
chr1 (149-230)||(21507138-21507219)
chr1 (99-232)||(48492751-48492885)
chr1 (86-137)||(43356848-43356899)
chr1 (95-137)||(11653102-11653144)
chr1 (266-295)||(2628134-2628163)
chr1 (98-134)||(13929313-13929349)
[»] scaffold0176 (1 HSPs)
scaffold0176 (78-219)||(16041-16182)
[»] chr3 (11 HSPs)
chr3 (73-229)||(31282501-31282657)
chr3 (73-229)||(55423390-55423546)
chr3 (178-233)||(46495596-46495651)
chr3 (98-160)||(21515283-21515344)
chr3 (172-228)||(40241671-40241727)
chr3 (78-132)||(40892157-40892211)
chr3 (90-160)||(40896781-40896851)
chr3 (86-160)||(46496859-46496933)
chr3 (174-233)||(21515570-21515629)
chr3 (95-136)||(1070090-1070131)
chr3 (86-154)||(17029669-17029737)
[»] chr7 (1 HSPs)
chr7 (99-232)||(44554727-44554860)
[»] chr6 (3 HSPs)
chr6 (176-233)||(7312242-7312299)
chr6 (95-134)||(31740334-31740373)
chr6 (180-233)||(24756986-24757039)
[»] chr8 (6 HSPs)
chr8 (100-230)||(3138823-3138953)
chr8 (149-230)||(42835932-42836013)
chr8 (95-137)||(23152499-23152541)
chr8 (99-137)||(24853383-24853421)
chr8 (98-134)||(36071440-36071476)
chr8 (98-134)||(37474098-37474134)
[»] chr4 (6 HSPs)
chr4 (78-168)||(20825438-20825527)
chr4 (158-229)||(28657081-28657152)
chr4 (86-229)||(11243717-11243860)
chr4 (174-224)||(9791742-9791792)
chr4 (78-187)||(28657154-28657263)
chr4 (98-134)||(44305041-44305077)
[»] chr2 (3 HSPs)
chr2 (98-137)||(2717837-2717876)
chr2 (95-137)||(23461237-23461279)
chr2 (94-134)||(11386638-11386678)
[»] chr5 (3 HSPs)
chr5 (95-137)||(43476283-43476325)
chr5 (98-134)||(328216-328252)
chr5 (98-134)||(19524001-19524037)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 2628443 - 2628184
Alignment:
Q  14 ggacatcaggggagccagaaacaacactttagggggccgctttatgtacttttaaaaaataggtttaattttataaatggccctttaacttatttcttgt 113  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  2628443 ggacatcgggggagccagaaacaacactttagggggctgctttatgtacttttaaaaaataggcttaattttataaatggtcctttaacttatttgttgt 2628344  T
Q  114 tttcaatttggtcccttaactctacgaaatttccgtttggtccctcaaatatgctccatcagtcaatttgatccatgtcagttaactttaactcaaaatg 213  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  2628343 tttcaatttggtcccttaactctaaaaaatttccgtttggtccctcaaatatgctccgtcagacaatttgatccatgtcagttaactttaactcaaaatg 2628244  T
Q  214 tattaggtggaccaacattgcatcacaaacatctannnnnnnnaacatttcttcatcttc 273  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  2628243 tattaggtggaccaacattgcatcacaaacatctattttttttaacatttcttcatcttc 2628184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 21507138 - 21507219
Alignment:
Q  149 tttggtccctcaaatatgctccatcagtcaatttgatccatgtcagttaactttaactcaaaatgtattaggtggaccaaca 230  Q
    |||||||| |||||| |||||| ||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  21507138 tttggtccttcaaatttgctccgtcagtcaatttgatccacgtcagttaactttaattccaaatgtattaggtggaccaaca 21507219  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 48492751 - 48492885
Alignment:
Q  99 taacttatttcttgttttcaatttggtcccttaactctacgaaatttccgttt-ggtccctcaaatatgctccatcagtcaatttgatccatgtcagtta 197  Q
    |||||||||| ||||||||| ||||||||| ||||| ||  || ||||| ||| ||||||||||||||||||| |||||||| |||||||| ||| ||||    
T  48492751 taacttatttgttgttttcattttggtcccataactttaa-aattttcctttttggtccctcaaatatgctccgtcagtcaaattgatccaagtctgtta 48492849  T
Q  198 ac-tttaactcaaaatgtattaggtggaccaacatt 232  Q
    || |||||||| |||||| |  ||||||||||||||    
T  48492850 acttttaactccaaatgtctatggtggaccaacatt 48492885  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 43356848 - 43356899
Alignment:
Q  86 ataaatggccctttaacttatttcttgttttcaatttggtcccttaactcta 137  Q
    |||||||| |||| ||||||||| ||||||||||||||||||||||||||||    
T  43356848 ataaatggtccttcaacttatttgttgttttcaatttggtcccttaactcta 43356899  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 11653144 - 11653102
Alignment:
Q  95 cctttaacttatttcttgttttcaatttggtcccttaactcta 137  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||    
T  11653144 cctttaacttattttttggtttcattttggtcccttaactcta 11653102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 2628163 - 2628134
Alignment:
Q  266 tcatcttcatacattcatcaaaaattccaa 295  Q
    ||||||||||||||||||||||||||||||    
T  2628163 tcatcttcatacattcatcaaaaattccaa 2628134  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 13929313 - 13929349
Alignment:
Q  98 ttaacttatttcttgttttcaatttggtcccttaact 134  Q
    ||||||||||| | |||||||||||||||||||||||    
T  13929313 ttaacttatttttggttttcaatttggtcccttaact 13929349  T

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Target: scaffold0176 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 16041 - 16182
Alignment:
Q  78 ttaattttataaatggccctttaacttatttcttgttttcaatttggtcccttaactctacgaaatttcc--gtttggtccctcaaatatgctccatcag 175  Q
    |||||| ||||||||| || ||||||||||| |||||||| ||||| |||||||||| ||  |||||| |  ||||||||||||||||||| ||  ||||    
T  16041 ttaattatataaatggtcccttaacttatttgttgttttcgatttgatcccttaacttta--aaattttcttgtttggtccctcaaatatgatctgtcag 16138  T
Q  176 tcaatttgatccatgtcagttaactttaactcaaaatgtattag 219  Q
    ||| ||||||| |||||||||||||||||||||||| |||||||    
T  16139 tcagtttgatctatgtcagttaactttaactcaaaacgtattag 16182  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 31282657 - 31282501
Alignment:
Q  73 taggtttaattttataaatggccctttaacttatttcttgttttcaatttggtcccttaactctacgaaatttccgtttggtccctcaaatatgctccat 172  Q
    |||| |||||| ||||||||| || | ||||||||| |||||||| || ||||||||||| ||||  || ||||  |||||||| ||||||||||||| |    
T  31282657 taggcttaattatataaatggtccctcaacttatttgttgttttcgatatggtcccttaattctaaaaattttcattttggtccttcaaatatgctccgt 31282558  T
Q  173 cagtcaatttgatccatgtcagttaactttaactcaaaatgtattaggtggaccaac 229  Q
    |||||| ||| |||||| ||||||||||| ||| | |||| | ||||||||||||||    
T  31282557 cagtcattttaatccatttcagttaacttcaaccccaaatatcttaggtggaccaac 31282501  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 229
Target Start/End: Original strand, 55423390 - 55423546
Alignment:
Q  73 taggtttaattttataaatggccctttaacttatttcttgttttcaatttggtcccttaactctacgaaatttccgtttggtccctcaaatatgctccat 172  Q
    |||| |||||| ||||||||| |  | ||||||||| |||||||| || ||||||||||  ||||  |||||||  |||||||| ||||||||||||| |    
T  55423390 taggcttaattatataaatggtcactcaacttatttgttgttttcgatatggtcccttatttctaaaaaatttcattttggtccttcaaatatgctccgt 55423489  T
Q  173 cagtcaatttgatccatgtcagttaactttaactcaaaatgtattaggtggaccaac 229  Q
     ||||| ||| || ||| ||||||||||| ||| | |||||| ||||||||||||||    
T  55423490 aagtcattttaattcatttcagttaacttcaaccccaaatgtcttaggtggaccaac 55423546  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 46495596 - 46495651
Alignment:
Q  178 aatttgatccatgtcagttaactttaactcaaaatgtattaggtggaccaacattg 233  Q
    |||||||||||||||||||||||||||  | |||||||||||||| ||||||||||    
T  46495596 aatttgatccatgtcagttaactttaaacccaaatgtattaggtgaaccaacattg 46495651  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 21515283 - 21515344
Alignment:
Q  98 ttaacttatttcttgttttcaatttggtcccttaactctacgaaatttccgtttggtccctca 160  Q
    ||||||||||| |||||||| ||||||||| |||||||||  |||||||||||||||||||||    
T  21515283 ttaacttatttgttgttttcgatttggtcc-ttaactctaaaaaatttccgtttggtccctca 21515344  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 40241727 - 40241671
Alignment:
Q  172 tcagtcaatttgatccatgtcagttaactttaactcaaaatgtattaggtggaccaa 228  Q
    ||||||| ||||||| ||||||||| |||||||||| ||||||||||||| ||||||    
T  40241727 tcagtcagtttgatcaatgtcagttgactttaactccaaatgtattaggtcgaccaa 40241671  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 40892157 - 40892211
Alignment:
Q  78 ttaattttataaatggccctttaacttatttcttgttttcaatttggtcccttaa 132  Q
    |||||| ||||||||| |  |||||||||||||||||||||||||| ||||||||    
T  40892157 ttaattatataaatggtctcttaacttatttcttgttttcaatttgatcccttaa 40892211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 40896851 - 40896781
Alignment:
Q  90 atggccctttaacttatttcttgttttcaatttggtcccttaactctacgaaatttccgtttggtccctca 160  Q
    |||| |||||||||||||| |||||||  ||||||| |||||| ||||  |||||||| ||||||||||||    
T  40896851 atggtcctttaacttatttgttgtttttgatttggttccttaattctaaaaaatttccatttggtccctca 40896781  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 46496933 - 46496859
Alignment:
Q  86 ataaatggccctttaacttatttcttgttttcaatttggtcccttaactctacgaaatttccgtttggtccctca 160  Q
    |||||||| || | ||||||||| |||||||| |||||||||||||||| ||  |||||||  ||||||||||||    
T  46496933 ataaatggtccctcaacttatttgttgttttcgatttggtcccttaactttaaaaaatttcaatttggtccctca 46496859  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 21515629 - 21515570
Alignment:
Q  174 agtcaatttgatccatgtcagttaactttaactcaaaatgtattaggtggaccaacattg 233  Q
    |||||| ||||||  |||| |||||||||||||| |||||||||||||||| ||| ||||    
T  21515629 agtcaaattgatctctgtcggttaactttaactccaaatgtattaggtggatcaatattg 21515570  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 1070131 - 1070090
Alignment:
Q  95 cctttaacttatttcttgttttcaatttggtcccttaactct 136  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  1070131 cctttaacttattttttggtttcattttggtcccttaactct 1070090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 17029669 - 17029737
Alignment:
Q  86 ataaatggccctttaacttatttcttgttttcaatttggtcccttaactctacgaaatttccgtttggt 154  Q
    |||||||| ||  |||||||||| || ||||| |||||||||||||| | ||  |||||||||||||||    
T  17029669 ataaatggtcccataacttatttgttcttttcgatttggtcccttaattttaaaaaatttccgtttggt 17029737  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 44554860 - 44554727
Alignment:
Q  99 taacttatttcttgttttcaatttggtcccttaactctacgaaatttccgtttggtccctcaaatatgctccatcagtcaatttgatccatgtcagttaa 198  Q
    |||||||||| ||||||||| ||||||||| ||||| ||     ||||  |||||||||||||||||||||| |||||||| |||||||| |||  ||||    
T  44554860 taacttatttgttgttttcattttggtcccataactttaaattttttctttttggtccctcaaatatgctccgtcagtcaaattgatccaagtctattaa 44554761  T
Q  199 ctttaactcaaaatgtattaggtggaccaacatt 232  Q
    ||||||||| |||||| |  ||||||||||||||    
T  44554760 ctttaactccaaatgtctatggtggaccaacatt 44554727  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 7312299 - 7312242
Alignment:
Q  176 tcaatttgatccatgtcagttaactttaactcaaaatgtattaggtggaccaacattg 233  Q
    |||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  7312299 tcaatttgatccatgtcagttaactttaaccccaaatgtattagatggaccaacattg 7312242  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 31740373 - 31740334
Alignment:
Q  95 cctttaacttatttcttgttttcaatttggtcccttaact 134  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  31740373 cctttaacttattttttgttttcaatttggtcccttaact 31740334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 24756986 - 24757039
Alignment:
Q  180 tttgatccatgtcagttaactttaactcaaaatgtattaggtggaccaacattg 233  Q
    ||||||||||||||||||||||||||   ||| ||||||| |||| ||||||||    
T  24756986 tttgatccatgtcagttaactttaaccacaaaagtattagatggagcaacattg 24757039  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 3138953 - 3138823
Alignment:
Q  100 aacttatttcttgttttcaatttggtcccttaactctacgaaatttccgtttg-gtccctcaaatatgctccatcagtcaatttgatccatgtcagttaa 198  Q
    ||||||||| ||||||||| ||||||| | ||||||||  |  ||||| |||  |||| | ||||||||||| | ||||||||||||||| |||||||||    
T  3138953 aacttatttgttgttttcattttggtctcataactctaa-atttttcctttttagtcctttaaatatgctccgttagtcaatttgatccaagtcagttaa 3138855  T
Q  199 ctttaactcaaaatgtattaggtggaccaaca 230  Q
    ||||||| | |||| |||||||| ||||||||    
T  3138854 ctttaaccccaaatatattaggtagaccaaca 3138823  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 42835932 - 42836013
Alignment:
Q  149 tttggtccctcaaatatgctccatcagtcaatttgatccatgtcagttaactttaactcaaaatgtattaggtggaccaaca 230  Q
    |||||||| | ||||||| ||| | ||||| ||||||| | || ||||||||||||| | |||| |||||||||||||||||    
T  42835932 tttggtcctttaaatatggtccgttagtcagtttgatcaaagtgagttaactttaaccccaaatatattaggtggaccaaca 42836013  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 23152541 - 23152499
Alignment:
Q  95 cctttaacttatttcttgttttcaatttggtcccttaactcta 137  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||    
T  23152541 cctttaacttattttttggtttcactttggtcccttaactcta 23152499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 24853421 - 24853383
Alignment:
Q  99 taacttatttcttgttttcaatttggtcccttaactcta 137  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  24853421 taacttatttgttgttttcaatttggtcccataactcta 24853383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 36071476 - 36071440
Alignment:
Q  98 ttaacttatttcttgttttcaatttggtcccttaact 134  Q
    ||||||||| | |||||||||||||||||||||||||    
T  36071476 ttaacttatattttgttttcaatttggtcccttaact 36071440  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 37474134 - 37474098
Alignment:
Q  98 ttaacttatttcttgttttcaatttggtcccttaact 134  Q
    ||||||||||| | |||||||||||||||||||||||    
T  37474134 ttaacttatttatggttttcaatttggtcccttaact 37474098  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 20825438 - 20825527
Alignment:
Q  78 ttaattttataaatggccctttaacttatttcttgttttcaatttggtcccttaactctacgaaatttccgtttggtccctcaaatatgct 168  Q
    |||||| ||||||||| |||| ||||||||| |||||||| ||||||||| |||| ||||  |||||||  ||||||||||||||||||||    
T  20825438 ttaattgtataaatggtcctt-aacttatttgttgttttcgatttggtcctttaattctaaaaaatttctatttggtccctcaaatatgct 20825527  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 28657152 - 28657081
Alignment:
Q  158 tcaaatatgctccatcagtcaatttgatccatgtcagttaactttaactcaaaatgtattaggtggaccaac 229  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| | |||||| ||||||||||||||    
T  28657152 tcaaatatgcttcgtcagtcattttaatccatttcagttaactttaaccccaaatgtcttaggtggaccaac 28657081  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 229
Target Start/End: Complemental strand, 11243860 - 11243717
Alignment:
Q  86 ataaatggccctttaacttatttcttgttttcaatttggtcccttaactctacgaaatttccgtttgg--tccctcaaatatgctccatcagtcaatttg 183  Q
    |||||||| || | ||||||||| |||||||  |||||||||||||||||||  |||||| | |||    ||  ||||||||| |   ||||||| ||||    
T  11243860 ataaatggtccctcaacttatttgttgttttagatttggtcccttaactcta--aaattttctttttcaatcattcaaatatgttatgtcagtcagtttg 11243763  T
Q  184 atccatgtcagttaactttaactcaaaatgtattaggtggaccaac 229  Q
    |||||||| ||||||||||||  | |||||| ||||||||||||||    
T  11243762 atccatgttagttaactttaatcccaaatgtcttaggtggaccaac 11243717  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 9791792 - 9791742
Alignment:
Q  174 agtcaatttgatccatgtcagttaactttaactcaaaatgtattaggtgga 224  Q
    ||||| ||||||| |||||||||||| ||||| | ||||||||||||||||    
T  9791792 agtcagtttgatcaatgtcagttaacattaaccccaaatgtattaggtgga 9791742  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 28657263 - 28657154
Alignment:
Q  78 ttaattttataaatggccctttaacttatttcttgttttcaatttggtcccttaactctacgaaatttcc-gtttggtccctcaaatatgctccatcagt 176  Q
    |||||| ||||||||| || | || |||||| |||||||| || ||||||||||| ||||  || |||||  |||||||| ||||||||||||| |||||    
T  28657263 ttaattatataaatggtccctcaatttatttgttgttttcgatatggtcccttaattcta-aaattttccattttggtccttcaaatatgctccgtcagt 28657165  T
Q  177 caatttgatcc 187  Q
    || ||| ||||    
T  28657164 cattttaatcc 28657154  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 44305077 - 44305041
Alignment:
Q  98 ttaacttatttcttgttttcaatttggtcccttaact 134  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  44305077 ttaacttattttttgttttcaatttggtcccctaact 44305041  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 2717876 - 2717837
Alignment:
Q  98 ttaacttatttcttgttttcaatttggtcccttaactcta 137  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  2717876 ttaacttatttgttgttttcaatttggtcccttaactcta 2717837  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 23461237 - 23461279
Alignment:
Q  95 cctttaacttatttcttgttttcaatttggtcccttaactcta 137  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||    
T  23461237 cctttaacttattttttggtttcattttggtcccttaactcta 23461279  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 11386638 - 11386678
Alignment:
Q  94 ccctttaacttatttcttgttttcaatttggtcccttaact 134  Q
    ||||||||||||||| | ||||| |||||||||||||||||    
T  11386638 ccctttaacttatttttagtttttaatttggtcccttaact 11386678  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 43476325 - 43476283
Alignment:
Q  95 cctttaacttatttcttgttttcaatttggtcccttaactcta 137  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||    
T  43476325 cctttaacttattttttggtttcattttggtcccttaactcta 43476283  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 328252 - 328216
Alignment:
Q  98 ttaacttatttcttgttttcaatttggtcccttaact 134  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  328252 ttaacttattttttgttttcaatttggtcccctaact 328216  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 19524001 - 19524037
Alignment:
Q  98 ttaacttatttcttgttttcaatttggtcccttaact 134  Q
    ||||||||||| | |||||||||||||||||||||||    
T  19524001 ttaacttatttttggttttcaatttggtcccttaact 19524037  T

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