View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_16 (Length: 354)
Name: NF6917_low_16
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 16975046 - 16974721
Alignment:
| Q |
13 |
catcatcgtctgcagtttctacagaggaaaggaatggcaattcaggctgagggataccggccttaatgcttaattcagaaagttgtgaaagaaactctac |
112 |
Q |
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| T |
16975046 |
catcatcgtctgcagtttctacagaggaaaggaatggcaattcaggctgagggataccggccttaatgcttaattcagaaagttgtgaaagaaactctac |
16974947 |
T |
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| Q |
113 |
tccttcggttctcatttgagatagataaagagtggttaaactaccaagtcgaggaagttgacgacagtttctgcacttggtagaaatatttatcatccag |
212 |
Q |
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| T |
16974946 |
tccttcggttctcatttgagatagataaagagtggttaaactaccaagtcgaggaagttgacgacagtttctgcacttggtagaaatatttatcatccag |
16974847 |
T |
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| Q |
213 |
tttgaaatatttacttctccataaccgctcatctcaaaaccctcgagatctctgtgaggctcgagaatttgatgtggagcggaatcagcatcgcaaccac |
312 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16974846 |
tttgaaatatttacttctccataactgctcatcttaaaaccctcgagacctctctgaggctcgagaatttgatgtggagcggaatcagcatcgcaaccac |
16974747 |
T |
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| Q |
313 |
aagacaagttgtaggatgcattctga |
338 |
Q |
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|||||||||||||||| | ||||||| |
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| T |
16974746 |
aagacaagttgtaggaggtattctga |
16974721 |
T |
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