View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6917_low_17 (Length: 345)

Name: NF6917_low_17
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6917_low_17
NF6917_low_17
[»] chr2 (8 HSPs)
chr2 (5-330)||(1101902-1102227)
chr2 (78-141)||(11510925-11510988)
chr2 (49-156)||(33502884-33502991)
chr2 (51-196)||(44439195-44439347)
chr2 (71-147)||(3476474-3476550)
chr2 (78-161)||(4908761-4908844)
chr2 (68-158)||(2002729-2002818)
chr2 (80-170)||(33962003-33962093)
[»] chr4 (9 HSPs)
chr4 (56-158)||(33560604-33560706)
chr4 (51-118)||(25318992-25319059)
chr4 (51-100)||(1099781-1099830)
chr4 (78-158)||(32818404-32818483)
chr4 (67-158)||(8330076-8330167)
chr4 (51-132)||(2174265-2174346)
chr4 (106-167)||(9064231-9064291)
chr4 (83-140)||(9082874-9082930)
chr4 (51-100)||(35065008-35065057)
[»] chr6 (6 HSPs)
chr6 (57-116)||(2234289-2234348)
chr6 (49-132)||(33141766-33141849)
chr6 (44-93)||(25196026-25196075)
chr6 (57-170)||(30926800-30926913)
chr6 (82-158)||(26280581-26280656)
chr6 (81-141)||(29240502-29240562)
[»] chr5 (4 HSPs)
chr5 (51-118)||(10898667-10898734)
chr5 (107-158)||(36927976-36928027)
chr5 (83-158)||(42439651-42439726)
chr5 (67-119)||(7667953-7668006)
[»] chr7 (4 HSPs)
chr7 (48-101)||(12306919-12306972)
chr7 (51-114)||(45004965-45005028)
chr7 (55-129)||(42668047-42668121)
chr7 (51-99)||(12306679-12306727)
[»] chr1 (3 HSPs)
chr1 (77-158)||(18325423-18325504)
chr1 (78-132)||(6932244-6932298)
chr1 (49-158)||(32088609-32088715)
[»] scaffold0393 (1 HSPs)
scaffold0393 (49-133)||(12365-12449)
[»] chr3 (3 HSPs)
chr3 (82-158)||(44771670-44771745)
chr3 (80-158)||(36239597-36239675)
chr3 (77-169)||(35058332-35058423)
[»] chr8 (2 HSPs)
chr8 (78-156)||(26668524-26668601)
chr8 (83-123)||(27402820-27402860)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 1101902 - 1102227
Alignment:
Q  5 gactgaaatgaaggggaaaaggcaaaataatacttggaagagccaaaatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1101902 gactgaaatgaaggggaaaaggcaaaataatacttggaagagccaaaatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctga 1102001  T
Q  105 tttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgattttcagactcaaattgttcaacccacttttagacaaacataactcactt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1102002 tttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgattttcagactcaaattgttcaacccacttttagacaaacataactcactt 1102101  T
Q  205 ttatccagaatcaattttttacgtcgcagaaccaaaagcatgtatgtttggatttagttttttcacggtgaaatgcgcaatgagaagttttgtaccgtgt 304  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1102102 ttatccagaatcaattttttacctcgcagaaccaaaagcatgtatgtttggatttagttttttcactgtgaaatgcgcaatgagaagttttgtaccgtgt 1102201  T
Q  305 ttgctgttaatattcttacttgatgt 330  Q
    ||||||||||||||||||||||||||    
T  1102202 ttgctgttaatattcttacttgatgt 1102227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 11510925 - 11510988
Alignment:
Q  78 tcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttg 141  Q
    ||||||||||||||||||||||||  ||||||||||| ||| || ||||||||||| |||||||    
T  11510925 tcgagtagaattgattttgcctccatatttgattctatcttgaagctagaatttggagtttttg 11510988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 33502991 - 33502884
Alignment:
Q  49 aaaatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaa 148  Q
    |||||| ||||||| || ||||||||| |||||||| || ||||||||| ||| || ||||||||||||| || |||||||||   |||||||| ||||     
T  33502991 aaaattgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagctagaatttcaagtttttgagtctag 33502892  T
Q  149 aagtgatt 156  Q
    | ||||||    
T  33502891 atgtgatt 33502884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 44439195 - 44439347
Alignment:
Q  51 aatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctgat---ttgattctaacttaaaactagaatttggtgtttttgattcta 147  Q
    |||| ||||||| || ||||||||| ||| || | |||||||||||||||  ||    ||||||||||||| || ||| ||||||| | |||||||||||    
T  44439195 aattaattttgacatgtttggttgccctccaggaaaattgattttgcctctagaagaattgattctaacttgaagctaaaatttggagcttttgattcta 44439294  T
Q  148 aaagtgattttcagactcaa----attgttcaacccacttttagacaaacata 196  Q
    ||| ||||||| | ||||||    |||||||||| |||||||| | |||||||    
T  44439295 aaattgattttaacactcaaatttattgttcaactcacttttacataaacata 44439347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 3476550 - 3476474
Alignment:
Q  71 gttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattcta 147  Q
    ||||| |||||||| |||||||||||||||| || |||||||||||||||| ||| || || | | |||||||||||    
T  3476550 gttgctctcgagtaaaattgattttgcctccagaattgattctaacttaaagctaaaaattagagcttttgattcta 3476474  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 4908761 - 4908844
Alignment:
Q  78 tcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgattttcag 161  Q
    |||||||||||||||||||||| | || || ||||||||||||| ||| ||||||  | ||| | ||||| || ||||||||||    
T  4908761 tcgagtagaattgattttgccttccgaatttattctaacttaaagctaaaatttgtagatttggcttctacaattgattttcag 4908844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 2002818 - 2002729
Alignment:
Q  68 ttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgatttt 158  Q
    ||||||||  || ||||||||||||||||||||| ||  ||||||| |||| || |||| |||||  |||||| ||||||||| |||||||    
T  2002818 ttggttgctttctagtagaattgattttgcctccagacctgattct-acttgaagctaggatttgtagtttttcattctaaaattgatttt 2002729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 33962093 - 33962003
Alignment:
Q  80 gagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgattttcagactcaaatt 170  Q
    |||||||||| ||||||||||   | ||  ||||||||| || || ||| |||| ||||||||||||| || ||||||| |||||||||||    
T  33962093 gagtagaattaattttgcctcaaaagttctttctaactttaagcttgaaattggagtttttgattctataattgatttttagactcaaatt 33962003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 33560706 - 33560604
Alignment:
Q  56 attttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgat 155  Q
    ||||||| || ||||||||| ||||||||||||||||||||||||  || |||||||||||  ||| |||| |||||  | |||||| ||||||||||||    
T  33560706 attttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattctaaccgaaagctaggatttgtagcttttgagtctaaaagtgat 33560607  T
Q  156 ttt 158  Q
    |||    
T  33560606 ttt 33560604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 25318992 - 25319059
Alignment:
Q  51 aatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaactt 118  Q
    |||| ||||||| || ||||||||| |||||||||||||||||||| |||| || |||||||||||||    
T  25318992 aattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaactt 25319059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 1099781 - 1099830
Alignment:
Q  51 aatttattttgaaatttttggttgcactcgagtagaattgattttgcctc 100  Q
    |||| |||||||||| ||||||||| |||||| |||||||||||||||||    
T  1099781 aattgattttgaaatatttggttgctctcgagcagaattgattttgcctc 1099830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 32818483 - 32818404
Alignment:
Q  78 tcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgatttt 158  Q
    |||||||||||||||||||||||| || |||||||| | || || ||||||||||  | ||||||||||| || |||||||    
T  32818483 tcgagtagaattgattttgcctccagaattgattct-atttgaagctagaatttgtagcttttgattctagaattgatttt 32818404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 8330076 - 8330167
Alignment:
Q  67 tttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgatttt 158  Q
    ||||||||| ||| |||| |||||||| |||||||  | | ||||||||||| || |||||| |||| | ||||||||||| || |||||||    
T  8330076 tttggttgctctcaagtaaaattgattctgcctccataatggattctaacttgaagctagaaattggagcttttgattctataattgatttt 8330167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 2174346 - 2174265
Alignment:
Q  51 aatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttg 132  Q
    |||| |||||||||| ||||| |||    ||||||||||||||||| |||| || |||||| |||||  |||||||||||||    
T  2174346 aattgattttgaaatgtttggatgctagtgagtagaattgattttgtctccggaattgattgtaactagaaactagaatttg 2174265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 9064231 - 9064291
Alignment:
Q  106 ttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgattttcagactcaa 167  Q
    ||||||||| ||| |||||||||||||  ||||||||||||| || ||||||||| ||||||    
T  9064231 ttgattcta-cttgaaactagaatttgtagtttttgattctagaattgattttcacactcaa 9064291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 9082930 - 9082874
Alignment:
Q  83 tagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgttttt 140  Q
    |||||||||||||||| ||||| ||||||||||||| ||  |||||||||| ||||||    
T  9082930 tagaattgattttgcc-cctgaattgattctaacttgaacttagaatttggagttttt 9082874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 35065008 - 35065057
Alignment:
Q  51 aatttattttgaaatttttggttgcactcgagtagaattgattttgcctc 100  Q
    |||| ||| ||| ||||||||||||  |||||||||||||||||||||||    
T  35065008 aattgattatgacatttttggttgctttcgagtagaattgattttgcctc 35065057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 2234348 - 2234289
Alignment:
Q  57 ttttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaac 116  Q
    |||||| || ||||||||| || ||||||||||||||||||||||||| |||||||||||    
T  2234348 ttttgatatgtttggttgctcttgagtagaattgattttgcctcctgaattgattctaac 2234289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 33141849 - 33141766
Alignment:
Q  49 aaaatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttg 132  Q
    |||||| ||||||| || ||||||||| ||| |||| |||||||||| ||||| || ||||||||||||  || ||||||||||    
T  33141849 aaaattgattttgatatgtttggttgctctcaagtataattgattttacctccagaattgattctaactagaacctagaatttg 33141766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 25196075 - 25196026
Alignment:
Q  44 gagccaaaatttattttgaaatttttggttgcactcgagtagaattgatt 93  Q
    ||||||||||||||||||| |  ||||||||| ||| |||||||||||||    
T  25196075 gagccaaaatttattttgataggtttggttgctctcaagtagaattgatt 25196026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 30926913 - 30926800
Alignment:
Q  57 ttttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgatt 156  Q
    |||||| || |||||| || |||||||||||||  ||||| ||   || | ||||||||||| || |||||| |||| |||||| |||||| || |||||    
T  30926913 ttttgacatgtttggtcgctctcgagtagaattagttttggctttagaatggattctaacttgaagctagaaattggagttttttattctagaattgatt 30926814  T
Q  157 ttcagactcaaatt 170  Q
    || | |||||||||    
T  30926813 tttacactcaaatt 30926800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 26280581 - 26280656
Alignment:
Q  82 gtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgatttt 158  Q
    |||||||||||||||||||  || ||||||| | ||| || ||||||||||  ||||||||||| |||| |||||||    
T  26280581 gtagaattgattttgcctcaagaattgattcca-cttgaagctagaatttgtagtttttgattccaaaattgatttt 26280656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 29240562 - 29240502
Alignment:
Q  81 agtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttg 141  Q
    ||||||||||||||| ||||| || ||||||||||||| || ||| ||||||  |||||||    
T  29240562 agtagaattgattttacctccagagttgattctaacttgaagctaaaatttgaagtttttg 29240502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 10898667 - 10898734
Alignment:
Q  51 aatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaactt 118  Q
    |||| ||||||| || ||||||||| |||||||| |||||||||||||||  || |||||||||||||    
T  10898667 aattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaactt 10898734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 36927976 - 36928027
Alignment:
Q  107 tgattctaacttaaaactagaatttggtgtttttgattctaaaagtgatttt 158  Q
    ||||||||||||||| || || ||||| |||||||||||||||| |||||||    
T  36927976 tgattctaacttaaagcttgattttggagtttttgattctaaaattgatttt 36928027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 42439726 - 42439651
Alignment:
Q  83 tagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgatttt 158  Q
    ||||||||||||| ||||| || ||||||||||||| || ||||||| ||  | |||||| |||||| ||||||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttt 42439651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 7668006 - 7667953
Alignment:
Q  67 tttggttgcactcgagtagaattga-ttttgcctcctgatttgattctaactta 119  Q
    ||||||||| || |||||||||||| |||||||||| || ||||||||||||||    
T  7668006 tttggttgctcttgagtagaattgaattttgcctccagaattgattctaactta 7667953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 12306919 - 12306972
Alignment:
Q  48 caaaatttattttgaaatttttggttgcactcgagtagaattgattttgcctcc 101  Q
    ||||||| ||||||| || ||||||||| || ||||||||||||||||||||||    
T  12306919 caaaattgattttgacatgtttggttgctcttgagtagaattgattttgcctcc 12306972  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 45004965 - 45005028
Alignment:
Q  51 aatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattcta 114  Q
    |||| ||||||| || ||||||||| ||||| ||||||||||||||||| | || |||||||||    
T  45004965 aattgattttgacatgtttggttgctctcgaatagaattgattttgccttcagaattgattcta 45005028  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 42668047 - 42668121
Alignment:
Q  55 tattttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaat 129  Q
    ||||||||||| |||||| || ||| ||||||||||||||| | || ||| ||||||||||| | || |||||||    
T  42668047 tattttgaaatatttggtcgctctcaagtagaattgattttccttcttgaattgattctaacatgaagctagaat 42668121  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 12306679 - 12306727
Alignment:
Q  51 aatttattttgaaatttttggttgcactcgagtagaattgattttgcct 99  Q
    |||| ||||||| || ||||||||| ||| |||||||||||||||||||    
T  12306679 aattgattttgacatgtttggttgctctcaagtagaattgattttgcct 12306727  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 18325504 - 18325423
Alignment:
Q  77 ctcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgatttt 158  Q
    |||||||||||||||||||||||||  | || | |||||||| || |||| ||||| || |||||| |||||| ||||||||    
T  18325504 ctcgagtagaattgattttgcctccaaagttaactctaacttgaagctaggatttgatgcttttgagtctaaatgtgatttt 18325423  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 6932298 - 6932244
Alignment:
Q  78 tcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttg 132  Q
    ||||||| |||||||||||| |||  | ||||||||||||| |||||||||||||    
T  6932298 tcgagtaaaattgattttgcatccataattgattctaacttcaaactagaatttg 6932244  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 32088715 - 32088609
Alignment:
Q  49 aaaatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaa 148  Q
    |||||| ||||||| || ||||||||| ||| ||||||||||||||| ||| |  | ||||||||||||| || |||| |||| | | |||||||  |||    
T  32088715 aaaattgattttgacatgtttggttgctctcaagtagaattgatttt-cctacaaaattgattctaacttgaagctaggatttcgagcttttgat--taa 32088619  T
Q  149 aagtgatttt 158  Q
    ||||||||||    
T  32088618 aagtgatttt 32088609  T

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Target: scaffold0393 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 12449 - 12365
Alignment:
Q  49 aaaatttattttgaaatttttggttgcactcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttgg 133  Q
    |||| ||||||||| || ||||| ||  ||| ||||||||||||||||||||| ||  |||||||||||| || ||| |||||||    
T  12449 aaaaattattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttgg 12365  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 44771670 - 44771745
Alignment:
Q  82 gtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgatttt 158  Q
    ||||||||| |||||||||| || ||||||||| || ||| ||||||||||  | |||||||||||||| |||||||    
T  44771670 gtagaattggttttgcctccggaattgattctacct-aaatctagaatttgtagcttttgattctaaaattgatttt 44771745  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 36239675 - 36239597
Alignment:
Q  80 gagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgatttt 158  Q
    |||||||||| ||||||| ||| || ||| ||||||||| |||||||||||||  | ||| ||||||| || |||||||    
T  36239675 gagtagaattaattttgcttccagaattgtttctaacttcaaactagaatttgaagctttcgattctagaattgatttt 36239597  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 35058332 - 35058423
Alignment:
Q  77 ctcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgattttcagactcaaat 169  Q
    ||||||||||||||||||||||||  || |||||||| ||||  | |||||| || | | ||||||||||| || ||||||| | ||||||||    
T  35058332 ctcgagtagaattgattttgcctcaagaattgattct-acttggagctagaaattcgagcttttgattctagaattgattttaacactcaaat 35058423  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 26668524 - 26668601
Alignment:
Q  78 tcgagtagaattgattttgcctcctgatttgattctaacttaaaactagaatttggtgtttttgattctaaaagtgatt 156  Q
    |||||||||||||||| |||||||  | |||||||| ||||||||||| ||||||  |||||| |||||| || |||||    
T  26668524 tcgagtagaattgattctgcctccataattgattct-acttaaaactacaatttgtagttttttattctataattgatt 26668601  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 27402820 - 27402860
Alignment:
Q  83 tagaattgattttgcctcctgatttgattctaacttaaaac 123  Q
    ||||||||||||||| ||  |||||||||||||||||||||    
T  27402820 tagaattgattttgcttctagatttgattctaacttaaaac 27402860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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