View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_18 (Length: 332)
Name: NF6917_low_18
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 26003597 - 26003909
Alignment:
| Q |
13 |
tggacatcagagacgtcttcaatctgaactgtagatgcta-------taggatgataggatgccttcatttcattctttaacattcttcattacaattag |
105 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003597 |
tggacaccagagacgtcttcaatctgaagtgtagatgctacataaattaggatgataggatgccttcatttcattctttaacattcttcattacaattag |
26003696 |
T |
|
| Q |
106 |
tctgtagatagggaatgtgataatagttaacagaaagaaagacggtgccctaaaatagagtacctagatattattctgtaaaaatagcagaaatttggtg |
205 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003697 |
tcagtagatagggaatgtgataatagttaacagaaagaaagacggtgccctaaaatagagtacctagatattattctgtaaaaatagcagaaatttggta |
26003796 |
T |
|
| Q |
206 |
aaattttgtaacctgtagctgaggagagagggaataggatgtataaagtaannnnnnngtaaaatgatcttgatttaatgataaacannnnnnnagtaca |
305 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
26003797 |
aaattttgtaacctatagctgaggaga----gaataggatgtataaagtaacttttttgtataatgatcttgatttaatgataaacatttttttagtaca |
26003892 |
T |
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| Q |
306 |
aagatattgcacaggtt |
322 |
Q |
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||||||||||| ||||| |
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| T |
26003893 |
aagatattgcagaggtt |
26003909 |
T |
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