View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6917_low_2 (Length: 698)

Name: NF6917_low_2
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6917_low_2
NF6917_low_2
[»] chr3 (1 HSPs)
chr3 (1-684)||(38617671-38618356)


Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 684
Target Start/End: Original strand, 38617671 - 38618356
Alignment:
Q  1 tcacgtgtattgcgagcttttttaaaattaataaagaaaagaagaagtttatttaggttcaaagaaaaccgcactaaatttaatttggagttcctattga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38617671 tcacgtgtattgcgagcttttttaaaattaataaagaaaagaagaagtttatttaggttcaaagaaaaccgcactaaatttaatttggagttcctattga 38617770  T
Q  101 ataaaacgttctaccttattcttgtgactagcaagagagcaaagtcgagccgtatcttgacaaagaagaaagacggcataaaaatgaaaagatatataca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  38617771 ataaaacgttctaccttattcttgtgactagcaagagagcaaagtcgagccgtatcttgacaaagacgaaagacggcataaaaatgaaaagatacataca 38617870  T
Q  201 ttgagaatatgaatttgtataacacactaaattatcttctccatctcatgttatatgttgtttatagatatgaacacataaatgtactccttccgtctca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38617871 ttgagaatatgaatttgtataacacactaaattatcttctccatctcatgttatatgttgtttatagatatgaacacataaatgtactccttccgtttca 38617970  T
Q  301 ttttagatatctacttgagttttgcacacttctttatatnnnnnnnnnnnnnnnnnnnnnnnnggacacattaataatgatcaaggggatattgaaaaat 400  Q
    |||||||||||||||||||||||||||||||||||||||                        |||||||||||||||||||||||||||| ||||||||    
T  38617971 ttttagatatctacttgagttttgcacacttctttatataaaagtaaaataaaaaattgaaaaggacacattaataatgatcaaggggataatgaaaaat 38618070  T
Q  401 aataattggtccaagacgggtctctaacgatgttcgacattggttgagcgtgatgagggacggcaaagtagtttctcggcagggttgttgtattagcaat 500  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  38618071 aataattggtccaagatgggtctctaacgatgttcgaaattggttgaacgtgatgagggacgacaaagtagtttctcggcaggattgttgtattagcaat 38618170  T
Q  501 cacttagaagctctagctagtgggagatcaaggcgagtgagaggagtcaaaatggttcatacccttctc--gagtgctaaggtcctatatagtggagtct 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  38618171 cacttagaagctctagctagtgggagatcaaggcgagtgagaggagtcaaaatggttcatacccttctcttgaatgctaaggtcctatatagtggagtct 38618270  T
Q  599 ttaaggagtttgggggagaaatgcgatttctaccaagattatatgatcatgatcaagtgatgattactctaagaggagtgatgtcc 684  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  38618271 ttaaggagtttgggggagaaatgcgatttctaccaagattttatgatcttgatcaaatgatgattactctaagaggagtgatgtcc 38618356  T

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