View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_21 (Length: 322)
Name: NF6917_low_21
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 3 - 304
Target Start/End: Original strand, 29258127 - 29258434
Alignment:
| Q |
3 |
cctgctactactgtacaactacaatccaacaggtcatatcacatcaaacaataacttgaaattataatagattttcaaaaatcagtaacaatgagaacat |
102 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29258127 |
cctgctactactgtacaactacaacccaacaggtcatatcacatcaaacaataacttgaaattataatagattttcaaaaatcagtaacaatgagaacat |
29258226 |
T |
|
| Q |
103 |
atatgaaatggaaaatacaagaaaatgcaacctttaaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29258227 |
atatgaaatggaaaatacaagaaaatgcaacctttaaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccat |
29258326 |
T |
|
| Q |
203 |
gaacaattccatagaagctcaaa------tcaaagctgacgcaacccaaatcttcaagtaccaattgacatgacaaatcatattttgaaactaaagaaag |
296 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29258327 |
gaacaattccatagaagctcaaatcaaagtcaaagctgacgcaacccaaatcttcaagtaccaattgacatgacaaatcatattttgaaactaaagaaag |
29258426 |
T |
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| Q |
297 |
ctactacc |
304 |
Q |
| |
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|||||||| |
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| T |
29258427 |
ctactacc |
29258434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 36 - 261
Target Start/End: Original strand, 29382278 - 29382492
Alignment:
| Q |
36 |
tcatatcacatcaaacaataacttgaaattataatagattttcaaaaatcagtaacaatgagaacatatatgaaatggaaaatacaagaaaatgcaacct |
135 |
Q |
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| T |
29382278 |
tcatatcatatcaaacaataatttgaaatcataatagatttttaaag-tcagtatcagtgagaacat----gaaattgaaaatacaagaaaatgcaa--- |
29382369 |
T |
|
| Q |
136 |
ttaaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatgaacaattccatagaagctcaaatcaaagctga |
235 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| | || ||||||||| |
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| T |
29382370 |
---aggtggcaagagtgtttaaagaatgagaaaggaagtttctcacacagaaccctgttttgaccatgaaaaattccatagaagccccaaccaaagctga |
29382466 |
T |
|
| Q |
236 |
cgcaacccaaatcttcaagtaccaat |
261 |
Q |
| |
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| T |
29382467 |
cgcaaccccaatcttcaagtaccaat |
29382492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 105 - 261
Target Start/End: Original strand, 21347546 - 21347696
Alignment:
| Q |
105 |
atgaaatggaaaatacaagaaaatgcaacctttaaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatga |
204 |
Q |
| |
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|||| ||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21347546 |
atgagatggaaaattcaagaaaatgcaa------aggtggcaagagtgtttaaagaatgagaaaggaagtttctcacacagaagcctgttttgaccatga |
21347639 |
T |
|
| Q |
205 |
acaattccatagaagctcaaatcaaagctgacgcaacccaaatcttcaagtaccaat |
261 |
Q |
| |
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| T |
21347640 |
aaaattccatagaagctccaaccaaagctgacgcaaccccaatcttcaagtaccaat |
21347696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 24280 - 24508
Alignment:
| Q |
22 |
tacaatccaacaggtcatatcacatcaaacaataacttgaaattataatagattttcaaaaatcagtaacaatgagaacatatatgaaatggaaaataca |
121 |
Q |
| |
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||||| ||||||| |||||| | | | ||||| || |||||||||||||||||||| ||| |||||| ||||||||| || || ||||||||| || |
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| T |
24280 |
tacaacccaacagatcatataataaccaacaacaatttgaaattataatagatttttaaag-tcagtatcaatgagaaaat----gagatggaaaattca |
24374 |
T |
|
| Q |
122 |
agaaaatgcaacctttaaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatgaacaattccatagaagct |
221 |
Q |
| |
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||||||||||| ||| |||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
24375 |
agaaaatgcaa------aggtggcaagagtgtttaaataatgagaaatgaagtttctcacacagaagcctgttttgaccatgaaaaattccatagaagct |
24468 |
T |
|
| Q |
222 |
caaatcaaagctgacgcaacccaaatcttcaagtaccaat |
261 |
Q |
| |
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| || ||||||||||||||||| |||||| |||||||||| |
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| T |
24469 |
ccaaccaaagctgacgcaaccccaatcttaaagtaccaat |
24508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 21359520 - 21359292
Alignment:
| Q |
22 |
tacaatccaacaggtcatatcacatcaaacaataacttgaaattataatagattttcaaaaatcagtaacaatgagaacatatatgaaatggaaaataca |
121 |
Q |
| |
|
||||| ||||||| |||||| | | | ||||| || |||||||||||||||||||| ||| |||||| ||||||||| || || ||||||||| || |
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| T |
21359520 |
tacaacccaacagatcatataataaccaacaacaatttgaaattataatagatttttaaag-tcagtatcaatgagaaaat----gagatggaaaattca |
21359426 |
T |
|
| Q |
122 |
agaaaatgcaacctttaaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatgaacaattccatagaagct |
221 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
21359425 |
agaaaatgcaa------aggtggcaagagtgtttaaagaatgagaaaggaagtttctcacacagaagcctgttttgaccatgaaaaattcgatagaagct |
21359332 |
T |
|
| Q |
222 |
caaatcaaagctgacgcaacccaaatcttcaagtaccaat |
261 |
Q |
| |
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| | |||||||||||||||| ||||||||||||||||| |
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| T |
21359331 |
ccaccaaaagctgacgcaaccccaatcttcaagtaccaat |
21359292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 138 - 262
Target Start/End: Original strand, 21360888 - 21361012
Alignment:
| Q |
138 |
aaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatgaacaattccatagaagctcaaatcaaagctgacg |
237 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| | ||||||||||| |
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| T |
21360888 |
aaggtggcaagagtgtttaaagaatgagaaaggaagtttctcacacagaagcatgttttgaccatgaaaaattccgtagaagctccacccaaagctgacg |
21360987 |
T |
|
| Q |
238 |
caacccaaatcttcaagtaccaatt |
262 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
21360988 |
caaccccaatcttcaagtaccaatt |
21361012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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