View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_23 (Length: 299)
Name: NF6917_low_23
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 7292185 - 7292458
Alignment:
| Q |
18 |
gcaacatcatattcattatcataatcactttcatcattagaagtatttgattctgtttcaaacaactcaatgtgattgatgacaaacgatccttcattga |
117 |
Q |
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| T |
7292185 |
gcaacatcatattcattatcataatcactttcatcattagaagtatttgattctgtttcaaacaactcaatgtgattgatgacaaacgatccttcattga |
7292284 |
T |
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| Q |
118 |
gaacttccaattccacttcattcggagacggataatagtgcgggatgttaaaagtattcacttcatcttcccttataatcccctgtagcatacaatatta |
217 |
Q |
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| T |
7292285 |
caacttccaattccacttcattcggagacggataatagtgcgggatgttaaaagtattcacttgatcttcccttataatcccctgtagcatacaatatta |
7292384 |
T |
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| Q |
218 |
aggacaaacacaaataattttcctatataactcatttttcatataggaaaatgatgtctatacctgcaacacca |
291 |
Q |
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| T |
7292385 |
aggacaaacacaaataattttcctatataactcatttttcatataggaaaatgatgtctatacctgcaacacca |
7292458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 7297132 - 7297270
Alignment:
| Q |
74 |
ttcaaacaactcaatgtgattgatgacaaacgatccttcattgagaacttccaattccacttcattcggagacggataatagtgcgggatgttaaaagta |
173 |
Q |
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| T |
7297132 |
ttcaaacaactccaaacgattgatggcaaatgatccttcattgagaacttctaactcaacttcatatggtgatggataatattgagggacattaaaagta |
7297231 |
T |
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| Q |
174 |
ttcacttcatcttcccttataatcccctgtagcatacaa |
212 |
Q |
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| T |
7297232 |
ttcacttgatcttcctttataatcccctgttgcatacaa |
7297270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 27736051 - 27736134
Alignment:
| Q |
92 |
attgatgacaaacgatccttcattgagaacttccaattccacttcattcggagacggataatagtgcgggatgttaaaagtatt |
175 |
Q |
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| T |
27736051 |
attgatgacaaatgatccttcattgagaacttccaacttcacttcagatggagatggataataattagggatgttgaaagtatt |
27736134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 20117995 - 20117929
Alignment:
| Q |
90 |
tgattgatgacaaacgatccttcattgagaacttccaattccacttcattcggagacggataatagt |
156 |
Q |
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| T |
20117995 |
tgatcgatgacaaatgacccttcagttagaacttccaatttcacttcagttggagatggataatagt |
20117929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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