View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_24 (Length: 269)
Name: NF6917_low_24
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_24 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 118 - 269
Target Start/End: Complemental strand, 14670567 - 14670416
Alignment:
| Q |
118 |
ttatcataaagattcgtgttcaaccatatcaaggttagcccgtcgataactcaatgaattttgtatttcgatggtcctaaatatttttcttttgttgaca |
217 |
Q |
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| T |
14670567 |
ttatcacaaagattcgtgttcaaccatatcaaggttagcctgtagataaatcaatgaattgtgtatttcgaggatcctaaatattttgcttttgttgaca |
14670468 |
T |
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| Q |
218 |
aagaatctacattttattgtcagtatattctgaggatggctcccctatgtat |
269 |
Q |
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| T |
14670467 |
aaaaatctacattttattgtcagtatattttgaggatggctcccctatgtat |
14670416 |
T |
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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 14670786 - 14670708
Alignment:
| Q |
14 |
tggacatcataactgaacctataagcgacatgcttgacgtttgtgaagattgggagcgtctcaagagaaatcataaagt |
92 |
Q |
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| T |
14670786 |
tggacaacataactgaacctataagcgacatgcttgacgtttgtgaagattgggagcgtctcaagagaaatcataaagt |
14670708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 269
Target Start/End: Complemental strand, 14660176 - 14660024
Alignment:
| Q |
118 |
ttatcataaagattcgtgttcaaccatatcaaggttagcccgtcgataactcaatgaattttgtatttcgatggtcctaaatatttttcttttgttgaca |
217 |
Q |
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| T |
14660176 |
ttatcacaaagattcgtgttcaaccataccaaggttatcccatagataaaccaatgaattgtgtatattgaggatcctaaactttttgctttagctgaca |
14660077 |
T |
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| Q |
218 |
aagaatctacattttattg-tcagtatattctgaggatggctcccctatgtat |
269 |
Q |
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| T |
14660076 |
aagaatctacattttattgttcagcattttgtgaggatgactcccctatgtat |
14660024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 14660390 - 14660314
Alignment:
| Q |
16 |
gacatcataactgaacctataagcgacatgcttgacgtttgtgaagattgggagcgtctcaagagaaatcataaagt |
92 |
Q |
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| T |
14660390 |
gacaacataattgaacctgtaagtgacatggatggcgtttgtgcagattgggagtgtctcaagagaaatcataaagt |
14660314 |
T |
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