View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6917_low_25 (Length: 265)

Name: NF6917_low_25
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6917_low_25
NF6917_low_25
[»] chr3 (3 HSPs)
chr3 (1-252)||(11897154-11897405)
chr3 (1-252)||(26432588-26432839)
chr3 (67-151)||(23424570-23424654)
[»] chr8 (3 HSPs)
chr8 (1-252)||(23132475-23132726)
chr8 (48-151)||(26587277-26587380)
chr8 (89-247)||(14760016-14760174)
[»] chr2 (11 HSPs)
chr2 (1-252)||(14653570-14653821)
chr2 (1-148)||(26791324-26791471)
chr2 (1-145)||(40328181-40328325)
chr2 (51-160)||(16322502-16322611)
chr2 (1-145)||(35135219-35135363)
chr2 (51-148)||(573245-573342)
chr2 (51-145)||(3779048-3779142)
chr2 (3-148)||(177504-177649)
chr2 (97-148)||(35062956-35063007)
chr2 (51-133)||(19265469-19265551)
chr2 (67-153)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (1-252)||(20284855-20285106)
chr1 (51-160)||(50236550-50236659)
chr1 (51-148)||(50451951-50452048)
chr1 (51-109)||(23465403-23465461)
[»] scaffold0036 (1 HSPs)
scaffold0036 (58-148)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (42-148)||(32874457-32874563)
chr5 (3-148)||(7817140-7817285)
[»] chr4 (5 HSPs)
chr4 (1-145)||(54477407-54477551)
chr4 (41-151)||(14307826-14307936)
chr4 (41-151)||(14291777-14291887)
chr4 (51-148)||(3881771-3881868)
chr4 (48-151)||(46784469-46784572)
[»] chr6 (4 HSPs)
chr6 (51-151)||(24893833-24893933)
chr6 (67-151)||(24990660-24990744)
chr6 (51-157)||(13599639-13599745)
chr6 (51-108)||(35233542-35233599)
[»] chr7 (3 HSPs)
chr7 (51-154)||(16769956-16770059)
chr7 (12-145)||(1353794-1353927)
chr7 (3-148)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 11897154 - 11897405
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgaca 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  11897154 ccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgaca 11897253  T
Q  101 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  11897254 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcacccatccaa 11897353  T
Q  201 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897354 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 26432839 - 26432588
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgaca 100  Q
    ||||||| |||||||||||||| ||  ||||  | |  ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||    
T  26432839 ccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtctccgaca 26432740  T
Q  101 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaa 200  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||||| || |||||||| ||||| || ||| ||||||||||||||| ||| || |||    
T  26432739 aggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaaccgattcaa 26432640  T
Q  201 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 252  Q
    ||||| ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  26432639 atcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 23424570 - 23424654
Alignment:
Q  67 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 151  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424570 tgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 23132726 - 23132475
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgaca 100  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  23132726 ccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgaca 23132627  T
Q  101 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaa 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23132626 aggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaa 23132527  T
Q  201 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 252  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23132526 atcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 26587277 - 26587380
Alignment:
Q  48 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 147  Q
    ||||| ||||| ||||| ||||| || ||||||||| | |||||||||||||||||||| || ||||| || || || ||||| ||||| ||||| || |    
T  26587277 ctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttgtatggagaaac 26587376  T
Q  148 tttc 151  Q
    ||||    
T  26587377 tttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 247
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  89 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgg 188  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   ||||||||| ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  189 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 247  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 14653821 - 14653570
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  14653821 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcctccaaca 14653722  T
Q  101 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaa 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||    
T  14653721 aggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcacccatccaa 14653622  T
Q  201 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 252  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653621 atcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 26791324 - 26791471
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgaca 100  Q
    |||||||||||||||||||||||||  ||||  | || | |||||| ||||||||||| || | |||||| |||||| ||||| | ||||||||| | ||    
T  26791324 ccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcaggca 26791423  T
Q  101 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 148  Q
     ||||||||| | ||||| || ||||| || ||||||||||| |||||    
T  26791424 gggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 40328181 - 40328325
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgaca 100  Q
    ||||||| |||||||||||||| ||  | || ||||| ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| || || ||    
T  40328181 ccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggacttcgtca 40328280  T
Q  101 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 145  Q
    |||||| |||||||| ||||||||||||||||| || ||||||||    
T  40328281 aggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 150  Q
    |||||||| |||||| |||| |||||||||||  | |||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  151 cagctgctat 160  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 35135363 - 35135219
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgaca 100  Q
    ||||||| |||||||||||||| ||  | || || || ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| || || ||    
T  35135363 ccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggacttcgtca 35135264  T
Q  101 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 145  Q
    |||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135263 aggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 573245 - 573342
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 148  Q
    |||||||| |||||  |||  ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573245 tggaatggtaacaaaatgcatccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 3779142 - 3779048
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 145  Q
    |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779142 tggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  3 atcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 102  Q
    ||||| |||||||||||||| ||  ||||| | |  | |||| | ||||||||||| ||||| | ||| ||| |||||||| | ||||| ||  ||||||    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  103 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 148  Q
    |||| || ||||| ||||| || |||||| | ||||||||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  97 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 148  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 19265469 - 19265551
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcct 133  Q
    |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| ||| |||| |||||||||||||||||    
T  19265469 tggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  67 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 153  Q
    |||| |||||||||||  | ||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 20284855 - 20285106
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgaca 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||   ||||||||||||| ||||||| |||||||| |||||    
T  20284855 ccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcctgcgaca 20284954  T
Q  101 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20284955 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaa 20285054  T
Q  201 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285055 atcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 50236659 - 50236550
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 150  Q
    ||||| ||||||||| |||| |||||||||||| | ||||||||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |    
T  50236659 tggaacgggaacaagatgccccctttcaagcctactcatggcctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactat 50236560  T
Q  151 cagctgctat 160  Q
    ||| ||||||    
T  50236559 cagttgctat 50236550  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 50451951 - 50452048
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 148  Q
    |||||||| |||||  |||||| |||||| ||| | |||||||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451951 tggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatcc 109  Q
    |||||||| ||||| ||||||| |||||||||| | ||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

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Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  58 ggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 148  Q
    |||||||| ||||  | ||||||||| | ||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  42 tctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 141  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  142 aaaagct 148  Q
    |||||||    
T  32874463 aaaagct 32874457  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 7817140 - 7817285
Alignment:
Q  3 atcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 102  Q
    |||||||||||||||||||| ||| | ||  | |  ||||||||  | ||||||||||||||  | ||  ||||||||||| | ||||| ||| |||| |    
T  7817140 atcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctcagacagg 7817239  T
Q  103 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 148  Q
    |||| || || || ||||| |||||||| |||||||||||||||||    
T  7817240 gtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 54477551 - 54477407
Alignment:
Q  1 ccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgaca 100  Q
    |||||||||||||||||||||| ||  | ||  | |  |||| ||| ||||||||||| |||||| | ||  ||||||||||| | ||||| || || ||    
T  54477551 ccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtctgcgcca 54477452  T
Q  101 aggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 145  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||||    
T  54477451 aggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 14307826 - 14307936
Alignment:
Q  41 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 140  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| |||| |||    
T  14307826 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatttgtatg 14307925  T
Q  141 gaaaagctttc 151  Q
    ||||| |||||    
T  14307926 gaaaaactttc 14307936  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 14291777 - 14291887
Alignment:
Q  41 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 140  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| | || |||    
T  14291777 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatctgtatg 14291876  T
Q  141 gaaaagctttc 151  Q
    ||||| |||||    
T  14291877 gaaaaactttc 14291887  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 3881771 - 3881868
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 148  Q
    |||||||| |||||  |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881771 tggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 46784572 - 46784469
Alignment:
Q  48 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 147  Q
    ||||||||||| || || |||||||||||||| ||| | ||||||||  |||||||||||||  | || || || || ||||||||||||||| |||| |    
T  46784572 ctttggaatggaaataaattgccgcctttcaaacctactcatggccttagacaaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaac 46784473  T
Q  148 tttc 151  Q
    ||||    
T  46784472 tttc 46784469  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 24893933 - 24893833
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 150  Q
    |||||||| |||||  |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || ||||||||||||||||    
T  24893933 tggaatggtaacaaaatgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagcttt 24893834  T
Q  151 c 151  Q
    |    
T  24893833 c 24893833  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 24990744 - 24990660
Alignment:
Q  67 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 151  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| ||||||||    
T  24990744 tgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagctttc 24990660  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 150  Q
    |||||||| |||||||| ||||  ||||||||| | ||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  151 cagctgc 157  Q
    |||||||    
T  13599739 cagctgc 13599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 35233542 - 35233599
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatc 108  Q
    |||||||| |||||||||||   |||||||||| | ||||| ||||||||||||||||    
T  35233542 tggaatggaaacaagttgcctaatttcaagcctacacatggtctccgacaaggtgatc 35233599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  51 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 150  Q
    |||||||| ||||| ||||||| |||||| ||| | ||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  151 cagc 154  Q
    ||||    
T  16769959 cagc 16769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 1353927 - 1353794
Alignment:
Q  12 atcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgt 111  Q
    |||||||||||||| || ||  | | || |||||| || | ||||||||| ||| || | || ||||||||| | |||||||||  ||||||||||||      
T  1353927 atcatgcattgcgttgcctcctccactttctctatcctctcgaatgggaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatccac 1353828  T
Q  112 tgtccccttatcttttcatcctttgcatggaaaa 145  Q
    | || || ||||||||||| ||||| ||||||||    
T  1353827 tctcaccatatcttttcattctttgtatggaaaa 1353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 1579304 - 1579159
Alignment:
Q  3 atcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaag 102  Q
    ||||| |||||||||||||| ||  ||||| | | || |||||| || | |||| | ||||||||||| || ||  | ||| | ||||| ||| |||| |    
T  1579304 atcaatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatagaaacaagttgcctccctttcatcctactcatgggctcagacagg 1579205  T
Q  103 gtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 148  Q
    |||||||| | |||||||| || || || |||||||||||||||||    
T  1579204 gtgatccgctctccccttacctctttattctttgcatggaaaagct 1579159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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