View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_28 (Length: 253)
Name: NF6917_low_28
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 31036848 - 31036698
Alignment:
| Q |
15 |
cgcatttgatgagtcctggtcccaaattattttgagatgctactattgctccaacatgatgatacaaaatatctgactaagtggccaagatgaacaagca |
114 |
Q |
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| T |
31036848 |
cgcatttgatgagtcctggtcccaaattgttt-gagatgctactattgctccaacgtgagaatacaaaatttctgactaagtggctaagatgaacaagca |
31036750 |
T |
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| Q |
115 |
actttcactattatcttgtggaagaatttataagaagtaactttgtaatttt |
166 |
Q |
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| T |
31036749 |
actttcactattatcttgtggaagaatttataagaagtaactttgtaatttt |
31036698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 31036681 - 31036597
Alignment:
| Q |
152 |
taactttgtaattttataatgagcggttatgccaagcataaagctggtatattgtatgttaaatgaatgccttcaattttgcaaat |
237 |
Q |
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| T |
31036681 |
taactttgtaattttataatgaacggttatgtcaagtatcaagctgttatattgtatgttaaatgaatgccgtc-attttgcaaat |
31036597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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