View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_31 (Length: 231)
Name: NF6917_low_31
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 33131865 - 33131788
Alignment:
| Q |
88 |
cacatgtcacttaaatgtcgggtaaaaacaaacacagcattaaattcttcctccacaactgacgcactatcttaatga |
165 |
Q |
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| T |
33131865 |
cacatgtcacttaaatgtcgggtaaaaacaaacacagcattaaattcttcctccactactgacgcactatcttaatga |
33131788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 33125197 - 33125147
Alignment:
| Q |
91 |
atgtcacttaaatgtcgggtaaaaacaaacacagcattaaattcttcctccac |
143 |
Q |
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| T |
33125197 |
atgtcacttaaatgtcgggaaaaaac--acacaacattaaattcttcctccac |
33125147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 215
Target Start/End: Complemental strand, 33131804 - 33131773
Alignment:
| Q |
184 |
acgcactatcttaatgatgtgctcccacaggt |
215 |
Q |
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| T |
33131804 |
acgcactatcttaatgatgtgctcccacaggt |
33131773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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