View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_33 (Length: 227)
Name: NF6917_low_33
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 18648817 - 18648624
Alignment:
| Q |
1 |
acccatgtatgataattggagccggaaagtactggagtaaccgtgacggaagaaggactgtcactgggatgcacgaagaagggactggtttgatccatgg |
100 |
Q |
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| T |
18648817 |
acccatgtatgataattggagccggaaagtactggagtaaccgtgacggaagaaggaccgtcactaggatgcacgaagaagggactggtttgatccatgg |
18648718 |
T |
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| Q |
101 |
aaggatcaattggaggaacaggagccaaacgaggcggcatgacaaataacggaagcaaaacttagatcgtttacacagcgaatgataccatgtt |
194 |
Q |
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| T |
18648717 |
aaggatcaattggaggaacaggagccaaacgaggcggcatgacaaataacggaagcgaaacttagatcgtttacacagcgaatgataccatgtt |
18648624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 15535361 - 15535169
Alignment:
| Q |
2 |
cccatgtatgataattggagccggaaagtactggagtaaccgtgacggaagaaggactgtcactgggatgcacgaagaagggactggtttgatccatgga |
101 |
Q |
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| T |
15535361 |
cccatgtatgataattggagccggaaagtactggagtaaccgtgacagaagaaggaccgtcactgggatgcacgatgaagggactggtttgatccatgga |
15535262 |
T |
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| Q |
102 |
aggatcaattggaggaacaggagccaaacgaggcggcatgacaaataacggaagcaaaacttagatcgtttacacagcgaatgataccatgtt |
194 |
Q |
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| T |
15535261 |
aggatcaattggaggagcaggagccaaacgaggtggcatgacaaataacggaagcgaaacttagatcgtttacacaacgaatgataccatgtt |
15535169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 17384990 - 17384813
Alignment:
| Q |
2 |
cccatgtatgataattggagccggaaagtactggagtaaccgtgacggaagaaggactgtcactgggatgcacgaagaagggactggtttgatccatgga |
101 |
Q |
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| T |
17384990 |
cccatgtatgataattggagccggaaagtaccggagtaaccgtgacggaagaaggaccgtcactgggatgcacgaagaagggactggtttgatccatgga |
17384891 |
T |
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| Q |
102 |
aggatcaattggaggaacaggagccaaacgaggcggcatgacaaataacggaagcaaaacttagatcgtttacacagc |
179 |
Q |
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| T |
17384890 |
aggatcaattggaggagtaggagccaaacgaggcggcatgacaaataacggaagcgaaacttagatcgtttacacagc |
17384813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 7222421 - 7222316
Alignment:
| Q |
23 |
cggaaagtactggagtaaccgtgacggaagaaggactgtcactgggatgcacgaagaagggactggtttgatccatggaaggatcaattggaggaacagg |
122 |
Q |
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||||||| || |||||||| | |||||||||||||| || || ||||| ||||||||||| ||||||||| || ||||| |||| | ||||||| | |
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| T |
7222421 |
cggaaagaaccggagtaacagagacggaagaaggaccatcgctcggatgaacgaagaagggtgtggtttgatgcagagaagggtcaaccgtaggaacatg |
7222322 |
T |
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| Q |
123 |
agccaa |
128 |
Q |
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|||||| |
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| T |
7222321 |
agccaa |
7222316 |
T |
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