View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6917_low_34 (Length: 223)

Name: NF6917_low_34
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6917_low_34
NF6917_low_34
[»] chr8 (16 HSPs)
chr8 (4-144)||(17742003-17742143)
chr8 (4-144)||(5735573-5735713)
chr8 (4-144)||(5212579-5212719)
chr8 (4-144)||(30532179-30532319)
chr8 (4-148)||(38206625-38206769)
chr8 (4-148)||(1634452-1634596)
chr8 (4-144)||(13815235-13815375)
chr8 (4-144)||(34955311-34955451)
chr8 (4-137)||(35099739-35099871)
chr8 (27-137)||(18029164-18029274)
chr8 (4-137)||(1957852-1957984)
chr8 (4-97)||(7511707-7511800)
chr8 (4-137)||(15053941-15054073)
chr8 (83-148)||(26244814-26244879)
chr8 (83-148)||(40283792-40283857)
chr8 (87-129)||(35099703-35099745)
[»] chr7 (11 HSPs)
chr7 (4-144)||(22191507-22191647)
chr7 (4-148)||(26812431-26812575)
chr7 (4-137)||(35028744-35028876)
chr7 (4-111)||(32129876-32129983)
chr7 (4-137)||(25218450-25218583)
chr7 (4-137)||(22656982-22657114)
chr7 (4-137)||(36518826-36518958)
chr7 (4-144)||(1940300-1940440)
chr7 (4-103)||(40302121-40302220)
chr7 (67-139)||(114831-114903)
chr7 (81-148)||(45549301-45549368)
[»] chr3 (28 HSPs)
chr3 (10-148)||(33935276-33935414)
chr3 (4-144)||(25832367-25832507)
chr3 (4-144)||(42601148-42601288)
chr3 (4-148)||(49028196-49028340)
chr3 (4-137)||(30692049-30692182)
chr3 (4-144)||(33748980-33749120)
chr3 (4-144)||(51427390-51427530)
chr3 (27-144)||(25450300-25450417)
chr3 (4-137)||(25790410-25790542)
chr3 (4-137)||(17466822-17466954)
chr3 (4-144)||(6832685-6832824)
chr3 (4-148)||(28154584-28154728)
chr3 (4-137)||(6048325-6048457)
chr3 (4-144)||(43474189-43474328)
chr3 (4-137)||(30418059-30418191)
chr3 (4-136)||(42561210-42561341)
chr3 (4-143)||(21231794-21231933)
chr3 (4-99)||(49357156-49357251)
chr3 (11-137)||(10426066-10426191)
chr3 (4-97)||(21225634-21225727)
chr3 (4-129)||(50017307-50017431)
chr3 (4-130)||(51973827-51973955)
chr3 (4-137)||(47144477-47144605)
chr3 (33-103)||(7008357-7008427)
chr3 (81-148)||(51304650-51304717)
chr3 (59-148)||(20139656-20139744)
chr3 (83-144)||(50033958-50034019)
chr3 (81-148)||(36178393-36178460)
[»] chr4 (20 HSPs)
chr4 (4-129)||(19409389-19409514)
chr4 (4-144)||(53183739-53183879)
chr4 (4-148)||(53347695-53347839)
chr4 (4-144)||(12158425-12158564)
chr4 (4-137)||(2214918-2215050)
chr4 (7-144)||(36656846-36656983)
chr4 (4-137)||(46917145-46917277)
chr4 (4-137)||(7401302-7401434)
chr4 (4-136)||(16174649-16174780)
chr4 (4-144)||(28899633-28899772)
chr4 (4-137)||(3532938-3533070)
chr4 (4-137)||(3618083-3618215)
chr4 (4-137)||(8992094-8992226)
chr4 (4-137)||(13110872-13111004)
chr4 (31-112)||(4981853-4981934)
chr4 (81-148)||(13094076-13094143)
chr4 (81-148)||(35809482-35809549)
chr4 (81-148)||(27863996-27864063)
chr4 (83-148)||(19273101-19273166)
chr4 (83-144)||(47749950-47750010)
[»] chr6 (9 HSPs)
chr6 (4-144)||(6380132-6380272)
chr6 (4-144)||(29428166-29428306)
chr6 (4-148)||(24932893-24933037)
chr6 (4-137)||(631822-631954)
chr6 (4-137)||(17960893-17961025)
chr6 (4-137)||(34838890-34839022)
chr6 (4-137)||(8219251-8219383)
chr6 (81-136)||(26654068-26654123)
chr6 (81-136)||(26760037-26760092)
[»] chr5 (17 HSPs)
chr5 (4-140)||(10569403-10569539)
chr5 (4-144)||(4577293-4577433)
chr5 (4-144)||(25032643-25032783)
chr5 (4-138)||(30647747-30647880)
chr5 (4-144)||(34710162-34710301)
chr5 (4-137)||(27942801-27942933)
chr5 (4-137)||(27406676-27406807)
chr5 (4-97)||(32976199-32976292)
chr5 (4-137)||(40889205-40889337)
chr5 (4-93)||(31013489-31013578)
chr5 (50-148)||(29618671-29618769)
chr5 (36-137)||(23648845-23648945)
chr5 (36-137)||(23809627-23809727)
chr5 (81-148)||(13479508-13479575)
chr5 (83-148)||(39238731-39238796)
chr5 (87-148)||(3455050-3455111)
chr5 (87-129)||(31013608-31013650)
[»] chr1 (18 HSPs)
chr1 (4-148)||(33164727-33164871)
chr1 (4-137)||(31468433-31468565)
chr1 (4-144)||(17680895-17681034)
chr1 (4-140)||(17783666-17783802)
chr1 (4-144)||(10266591-10266730)
chr1 (4-144)||(36230804-36230943)
chr1 (4-144)||(47300131-47300270)
chr1 (7-137)||(48404636-48404765)
chr1 (4-137)||(2477958-2478090)
chr1 (4-137)||(45239446-45239578)
chr1 (4-137)||(48387737-48387869)
chr1 (4-144)||(45455786-45455925)
chr1 (4-92)||(51520544-51520632)
chr1 (15-137)||(8468625-8468746)
chr1 (53-148)||(43739268-43739362)
chr1 (67-137)||(23093074-23093143)
chr1 (83-144)||(44929007-44929068)
chr1 (84-148)||(45362988-45363052)
[»] chr2 (19 HSPs)
chr2 (8-129)||(2780435-2780556)
chr2 (4-144)||(5146354-5146494)
chr2 (4-137)||(12855325-12855457)
chr2 (4-144)||(36855416-36855556)
chr2 (4-137)||(8852363-8852495)
chr2 (8-99)||(31192646-31192737)
chr2 (4-137)||(7588132-7588264)
chr2 (4-137)||(22351243-22351375)
chr2 (4-137)||(30822212-30822344)
chr2 (4-97)||(6363272-6363365)
chr2 (16-95)||(39433637-39433716)
chr2 (60-144)||(31173885-31173969)
chr2 (81-144)||(39433732-39433795)
chr2 (78-136)||(926876-926934)
chr2 (84-148)||(7763203-7763267)
chr2 (91-144)||(1987408-1987461)
chr2 (114-148)||(31192736-31192770)
chr2 (91-144)||(16218581-16218634)
chr2 (76-137)||(44280289-44280349)
[»] scaffold0007 (1 HSPs)
scaffold0007 (4-144)||(170160-170300)
[»] scaffold0362 (1 HSPs)
scaffold0362 (4-137)||(4954-5086)
[»] scaffold0100 (1 HSPs)
scaffold0100 (4-144)||(30178-30308)
[»] scaffold0054 (1 HSPs)
scaffold0054 (51-137)||(56811-56896)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 17742143 - 17742003
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17742143 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcgtgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 17742044  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| |||||||| |||| |||||||||||||    
T  17742043 agtttgttgtattgcattttaaattatttgtgtgccgcgtg 17742003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 5735713 - 5735573
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  5735713 aagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttttatgctt 5735614  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| ||||||||||||| |||||||||||||    
T  5735613 agtttgttgtattgcattttaagttatttgtgtgccgcgtg 5735573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 5212719 - 5212579
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  5212719 aagcagatctagtgaaacacatacggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttttatgctt 5212620  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| ||||||||||||| |||||||||||||    
T  5212619 agtttgttgtattgcattttaagttatttgtgtgccgcgtg 5212579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 30532179 - 30532319
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  30532179 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattaaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgctt 30532278  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||   || ||||||||||||| |||||| ||||||    
T  30532279 agtttgttatcttgcattttaagttatttgtgtgtcgcgtg 30532319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 38206625 - 38206769
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38206625 aagcagatctagtgaagcacatatggacaaagtttggaatgtatggtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgctt 38206724  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||   || ||||||||||||| |||||| ||||||||||    
T  38206725 agtttgttatcttccattttaagttatttgtgtgtcgcgtgttta 38206769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 1634452 - 1634596
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  1634452 aagcagatctagtgaagcacatatggacaaagtttggaatgtatagtgattgaagatgatttgtttcgtactaaataaattacttgtgtgttgtatgctt 1634551  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||  || ||||||||||||| ||||||  |||||||||    
T  1634552 agtttgttgtcttccattttaagttatttgtgtgttgcgtgttta 1634596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 13815375 - 13815235
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  13815375 aagcagatctagtgaaacacatatggacaaagtttgaaatgtatcgtgattgaagatgatttgtatcctactaaataaattacttgtgtgttttatgctt 13815276  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| ||||||||||||| |||||||||||||    
T  13815275 agtttgttgtattgcattttaagttatttgtgtgccgcgtg 13815235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 34955311 - 34955451
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| ||    
T  34955311 aagcagatcaagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttttatggtt 34955410  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| ||||||||||||| |||||| ||||||    
T  34955411 agtttgttgtattgcattttaagttatttgtgtgtcgcgtg 34955451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 35099871 - 35099739
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  35099871 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 35099772  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  35099771 -gtttgttgtcttgcattttaagctatttgtgtg 35099739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 18029164 - 18029274
Alignment:
Q  27 tggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaag 126  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  18029164 tggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgtattgcattttaag 18029263  T
Q  127 ttatctgtgtg 137  Q
    |||| ||||||    
T  18029264 ttatttgtgtg 18029274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 1957852 - 1957984
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  1957852 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 1957951  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  1957952 -gtttgttgtcttgcattttaagctatttgtgtg 1957984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 7511707 - 7511800
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgt 97  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  7511707 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgtttgttgt 7511800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 15054073 - 15053941
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  15054073 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcgcgattgaagatgatttgtatcgtactaagtaaattacttgtgtgttgtgtgctt 15053974  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  15053973 -gtttgttgtcttgcattttaagctatttgtgtg 15053941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 26244879 - 26244814
Alignment:
Q  83 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||    
T  26244879 ttacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgttta 26244814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 40283857 - 40283792
Alignment:
Q  83 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||||||||| |||||||||||||  || ||||||||||||| |||||  ||||||||||    
T  40283857 ttacttgtgtgttgtacgcttagtttgttgtcttccattttaagttatttgtgtatcgcgtgttta 40283792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 35099745 - 35099703
Alignment:
Q  87 ttgtgtgttgtatgcttagtttgttgcatttcattttaagtta 129  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||    
T  35099745 ttgtgtgttgcatgcttagtttgttgtattgcattttaagtta 35099703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 22191647 - 22191507
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22191647 aagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgctt 22191548  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| ||||||||||||| |||||||||||||    
T  22191547 agtttgttgtattgcattttaagttatttgtgtgccgcgtg 22191507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 26812575 - 26812431
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||||||| |||||||||||||| ||    
T  26812575 aagcagatctagtgaagcacatatggacaaagtttggaaagtatagtgattgaagatgatttgtatcgtactaaataaattagttgtgtgttgtatgttt 26812476  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||  || ||||||||||||| |||||| ||||||||||    
T  26812475 agtttgttgtcttccattttaagttatttgtgtgtcgcgtgttta 26812431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 35028744 - 35028876
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  35028744 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 35028843  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||||||| ||||||    
T  35028844 -gtttgttgtcttgcattttaagttatttgtgtg 35028876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 32129876 - 32129983
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32129876 aagcagatctagtgaagcacatatggacaaagtttggaatgtatagtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgctt 32129975  T
Q  104 agtttgtt 111  Q
    ||||||||    
T  32129976 agtttgtt 32129983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 25218450 - 25218583
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  25218450 aagcagatctagtgaaacacatatcgacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgatt 25218549  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
    ||||| ||| ||| ||||||| ||||| ||||||    
T  25218550 agttttttgtattgcattttatgttatttgtgtg 25218583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 22657114 - 22656982
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||| |||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  22657114 aagcaaatctagtgaagcacatatggacaaagtttgaaatgtttcgtgattgaatatgatttctatcgtactaaataaattacttgtgtgttgtgtgctt 22657015  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  22657014 -gtttgttgtcttgcattttaagctatttgtgtg 22656982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 36518958 - 36518826
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  36518958 aagcagatctagtgaagcacatatggataaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 36518859  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  36518858 -gtttgttgtcttgcattttaagctatttgtgtg 36518826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 1940300 - 1940440
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||  |||||||| ||||||||||||||| || |||||||||||||||| |||| |||||| ||| ||||||||||||||| |||||    
T  1940300 aagcagatctagtgaaagacatatgggcaaagtttggaatgtttcgtgattgaagatgatttgtatcatactaattaagttacttgtgtgttgtgtgctt 1940399  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    |||||||||  || ||| ||||||||| |||||| ||||||    
T  1940400 agtttgttgtcttgcatcttaagttatttgtgtgtcgcgtg 1940440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 40302121 - 40302220
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  40302121 aagcagatctagtgaagcacatatggacaaagtttgaaatgtttcgtgattgaagatgatctgtatcgtactaaataaattacttgtgtgttgtgtgctt 40302220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 114903 - 114831
Alignment:
Q  67 tatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgcc 139  Q
    |||||||||||||||| ||||||||||||||||||||||||||||   || ||||||||||||| ||||||||    
T  114903 tatcgtactaaataaaatacttgtgtgttgtatgcttagtttgttttcttgcattttaagttatttgtgtgcc 114831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 45549301 - 45549368
Alignment:
Q  81 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||    
T  45549301 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgttta 45549368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 33935414 - 33935276
Alignment:
Q  10 atctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttg 109  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33935414 atctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgcttagtttg 33935315  T
Q  110 ttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||| ||| ||||||||||||| |||||||||||||||||    
T  33935314 ttgtattgcattttaagttatttgtgtgccgcgtgttta 33935276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 25832367 - 25832507
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  25832367 aagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttttatgctt 25832466  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| ||||||||||||| |||||||||||||    
T  25832467 agtttgttgtattgcattttaagttatttgtgtgccgcgtg 25832507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 42601148 - 42601288
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  42601148 aagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttttatgctt 42601247  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| ||||||||||||| |||||||||||||    
T  42601248 agtttgttgtattgcattttaagttatttgtgtgccgcgtg 42601288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 49028196 - 49028340
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49028196 aagcagatctagtgaagcacatatggacaaagtttggaatgtatagtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgctt 49028295  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||  || ||||||||||||| |||||| ||||||||||    
T  49028296 agtttgttgtcttgcattttaagttatttgtgtgtcgcgtgttta 49028340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 30692049 - 30692182
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30692049 aagcagacctagtgaagcacatatggacaaagtttggaatgtatcgtgattgaagatgatttctatcgtactaaataaattacttgcgtgttgtatgctt 30692148  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
    ||||||||| ||| ||||||||||||| ||||||    
T  30692149 agtttgttgtattgcattttaagttatttgtgtg 30692182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 33749120 - 33748980
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33749120 aagcagatctagtgaaacagatatggacaaagtttggaatgtatcgtggttgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgctt 33749021  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||| ||| ||| ||||||||||||| |||||||||||||    
T  33749020 agttttttgtattgcattttaagttatttgtgtgccgcgtg 33748980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 51427530 - 51427390
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  51427530 aagcagatctagtgaaacacatatggacaaagtttggaatgtatcgcgattgaagatgatttgtatcgtactaaataaattacttgtgtgttttatgctt 51427431  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| ||||||||||||| |||||| ||||||    
T  51427430 agtttgttgtattgcattttaagttatttgtgtgtcgcgtg 51427390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 25450300 - 25450417
Alignment:
Q  27 tggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaag 126  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  25450300 tggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgtattgcattttaag 25450399  T
Q  127 ttatctgtgtgccgcgtg 144  Q
    |||| |||||||||||||    
T  25450400 ttatttgtgtgccgcgtg 25450417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 25790410 - 25790542
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  25790410 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 25790509  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  25790510 -gtttgttgtcttgcattttaagctatttgtgtg 25790542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 17466954 - 17466822
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  17466954 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 17466855  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||| ||  || ||||||||| ||| ||||||    
T  17466854 -gtttgctgtcttgcattttaagctatttgtgtg 17466822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 6832824 - 6832685
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  6832824 aagcagatctagtgaagcaaatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 6832725  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
     ||||||||  || ||||||||| ||| |||||| ||||||    
T  6832724 -gtttgttgtcttgcattttaagctatttgtgtgtcgcgtg 6832685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 28154584 - 28154728
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||    
T  28154584 aagcagatctagtgaagcacatatggacaaagtttggaatgtatagtgattgaagatgatttgtattgtactaaataaattccttgtgtgttgtatgttt 28154683  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||| ||   || ||||||||||||| |||||| | ||||||||    
T  28154684 agtttattatcttgcattttaagttatttgtgtgtcacgtgttta 28154728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 6048325 - 6048457
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  6048325 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgtgtgttgtgtgctt 6048424  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  6048425 -gtttgttgtcttgcattttaagctatttgtgtg 6048457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 43474328 - 43474189
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  43474328 aagcagatctagtgaaggacatatggacaaagtttgaaatgtttcgtgattgaagatgatttatatcgtactaaataaattacttgtgtgttgtgtgctt 43474229  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
     ||||||||  || ||||||||| ||| |||||| ||||||    
T  43474228 -gtttgttgtcttgcattttaagctatttgtgtgacgcgtg 43474189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 30418059 - 30418191
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  30418059 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 30418158  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  30418159 -gtttgttgtcttgcattttaagctatttgtgtg 30418191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 42561341 - 42561210
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||||||||||||||||||||| |||||||| |||||    
T  42561341 aagcagatctagtgaagcacatatggacaaagtttgaaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttctgtgttgtgtgctt 42561242  T
Q  104 agtttgttgcatttcattttaagttatctgtgt 136  Q
     ||||||||  || ||||||||| ||| |||||    
T  42561241 -gtttgttgtcttgcattttaagctatttgtgt 42561210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 21231794 - 21231933
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||| | ||||||||| | |||||||||| || |||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||    
T  21231794 aagcagatctagtgaagaatatatggacacaatttggaatgtttcgtgattgaagatgatttgtatcgtactaattaagttacttgtgtgttgtgtgctt 21231893  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgt 143  Q
    |||||||||  || ||||||||| ||| ||||||||||||    
T  21231894 agtttgttgtcttacattttaaggtatttgtgtgccgcgt 21231933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 49357156 - 49357251
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtat 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  49357156 aagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtattgtactaaataaattacttgtgtgttgtat 49357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 10426066 - 10426191
Alignment:
Q  11 tctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgt 110  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||    
T  10426066 tctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgtgtgttgtgtgctt-gtttgt 10426164  T
Q  111 tgcatttcattttaagttatctgtgtg 137  Q
    ||  || ||||||||| ||| ||||||    
T  10426165 tgtcttgcattttaagctatttgtgtg 10426191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 21225727 - 21225634
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgt 97  Q
    |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  21225727 aagcagatctagtgaagctcatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaattaagttacttgtgtgttgt 21225634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 50017431 - 50017307
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||||||| ||||||||||||||||  |||||||| ||||||| |||||||||||||| |||||||| || ||||||| ||    
T  50017431 aagcagatctagtgaaacacatatggataaagtttggaatgtattgtgattgaaaatgatttgtatcgtactaaatatattacttgcgtattgtatgttt 50017332  T
Q  104 agtttgttgcatttcattttaagtta 129  Q
    ||||| ||| |||  |||||||||||    
T  50017331 agttt-ttgtattgtattttaagtta 50017307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 51973955 - 51973827
Alignment:
Q  4 aagcagatctagtgaagcacatat--ggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgc 101  Q
    ||||||||||||||||||||||||  |||||| ||||| ||||| || |||||||||||||||| ||| ||||||| ||| ||||||||||||||| | |    
T  51973955 aagcagatctagtgaagcacatatatggacaatgtttgaaatgtttcgtgattgaagatgatttgtattgtactaattaagttacttgtgtgttgtgttc 51973856  T
Q  102 ttagtttgttgcatttcattttaagttat 130  Q
    |||||||||||  || |||||||||||||    
T  51973855 ttagtttgttgtcttgcattttaagttat 51973827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 47144605 - 47144477
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||    ||||||| ||||||||||| |||||    
T  47144605 aagcagatctagtgaagcacatatggacaaaatttggaatgtttcatgattgaagatgatttgtattgtac----taaattatttgtgtgttgtgtgctt 47144510  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  47144509 -gtttgttgtcttgcattttaagctatttgtgtg 47144477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 7008427 - 7008357
Alignment:
Q  33 aagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  7008427 aagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 7008357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 51304717 - 51304650
Alignment:
Q  81 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||    
T  51304717 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgttta 51304650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 20139744 - 20139656
Alignment:
Q  59 atgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||  || ||||||||  ||| |||||||| | ||||||    
T  20139744 atgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaaactatttgtgtgccacatgttta 20139656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 50034019 - 50033958
Alignment:
Q  83 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    |||||||||||||||||||||||||||||| ||| |||||||| || | |||||||||||||    
T  50034019 ttacttgtgtgttgtatgcttagtttgttgtattgcattttaaattttttgtgtgccgcgtg 50033958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 36178393 - 36178460
Alignment:
Q  81 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||||||||||||| ||||||||| |  || ||||||||||||| |||||| ||||||||||    
T  36178393 aattacttgtgtgttgtatgattagtttgtcgtcttccattttaagttatttgtgtgtcgcgtgttta 36178460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 19409514 - 19409389
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19409514 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcgtgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 19409415  T
Q  104 agtttgttgcatttcattttaagtta 129  Q
    ||||||||| ||| ||||||||||||    
T  19409414 agtttgttgtattgcattttaagtta 19409389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 53183739 - 53183879
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  53183739 aagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttttatgctt 53183838  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| ||||||||||||| |||||||||||||    
T  53183839 agtttgttgtattgcattttaagttatttgtgtgccgcgtg 53183879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 53347695 - 53347839
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  53347695 aagcagatctagtgaagcccatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatggtactaaataaattatttgtgtgttgtatgctt 53347794  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||  || ||||||||||||| |||||| ||| ||||||    
T  53347795 agtttgttgtcttgcattttaagttatttgtgtgtcgcatgttta 53347839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 12158564 - 12158425
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||| |||||||||    
T  12158564 aagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgta-cgtactaaataaattacttgtgtgctgtatgctt 12158466  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    | ||| ||| ||| ||||||||||||| |||||||||||||    
T  12158465 aattttttgtattgcattttaagttatttgtgtgccgcgtg 12158425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 2214918 - 2215050
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  2214918 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 2215017  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  2215018 -gtttgttgtcttgcattttaagctatttgtgtg 2215050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 36656983 - 36656846
Alignment:
Q  7 cagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagt 106  Q
    ||||||||||||| |||||||||| ||||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  36656983 cagatctagtgaaacacatatggataaagtttggaatgtaccgtgattgaagatgatttgtatcgtattaaataaattacttgtgtgttgtatgcttagt 36656884  T
Q  107 ttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    |||||| ||| ||||||||||| | |||||| ||||||    
T  36656883 ttgttgtattgcattttaagttgtttgtgtgtcgcgtg 36656846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 46917145 - 46917277
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  46917145 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 46917244  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  46917245 -gtttgttgtcttgcattttaagctatttgtgtg 46917277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 7401434 - 7401302
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  7401434 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtattaaataaattacttgtgtgttgtgtgctt 7401335  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  7401334 -gtttgttgtcttgcattttaagctatttgtgtg 7401302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 16174649 - 16174780
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  16174649 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 16174748  T
Q  104 agtttgttgcatttcattttaagttatctgtgt 136  Q
     ||||||||  || ||||||||| ||| |||||    
T  16174749 -gtttgttgtcttgcattttaagctatttgtgt 16174780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 28899772 - 28899633
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  28899772 aagcagatctagtgaagcacatacggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 28899673  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
     ||||||||  || ||||||||| ||| |||||| ||||||    
T  28899672 -gtttgttgtcttgcattttaagctatttgtgtgtcgcgtg 28899633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 3532938 - 3533070
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  3532938 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgtgtgttgtgtgctt 3533037  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  3533038 -gtttgttgtcttgcattttaagctatttgtgtg 3533070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 3618083 - 3618215
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  3618083 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 3618182  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  3618183 -gtttgttgtcttgcattttaagctatttgtgtg 3618215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 8992226 - 8992094
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  8992226 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 8992127  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  8992126 -gtttgttgtcttgcattttaagctatttgtgtg 8992094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 13111004 - 13110872
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  13111004 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 13110905  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  13110904 -gtttgttgtcttgcattttaagctatttgtgtg 13110872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 4981934 - 4981853
Alignment:
Q  31 caaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttg 112  Q
    ||||||||||||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4981934 caaagtttggaatctatagtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgcttagtttgttg 4981853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 13094076 - 13094143
Alignment:
Q  81 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||    
T  13094076 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgttta 13094143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 35809549 - 35809482
Alignment:
Q  81 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||| ||||||||||    
T  35809549 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgttta 35809482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 27864063 - 27863996
Alignment:
Q  81 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||||||||||| |||||||||||||  || ||||||||||||| |||||| ||||||||||    
T  27864063 aattacttgtgtgttgtacgcttagtttgttgtcttccattttaagttatttgtgtgtcgcgtgttta 27863996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 19273166 - 19273101
Alignment:
Q  83 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||||||||||||||||||||||||  || |||||||| |||| |||||  ||||||||||    
T  19273166 ttacttgtgtgttgtatgcttagtttgttgtcttccattttaatttatttgtgtttcgcgtgttta 19273101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 47749950 - 47750010
Alignment:
Q  83 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||||| |||||||||||||| ||| ||| ||||||||||||| || ||||||||||    
T  47749950 ttacttgtgtgctgtatgcttagttttttgtattgcattttaagttatttg-gtgccgcgtg 47750010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 6380132 - 6380272
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  6380132 aagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttttatgctt 6380231  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| ||||||||||||| |||||||||||||    
T  6380232 agtttgttgtattgcattttaagttatttgtgtgccgcgtg 6380272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 29428166 - 29428306
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  29428166 aagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacctgtgtgctgtatgctt 29428265  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||| ||| |||  |||||||||||| |||||||||||||    
T  29428266 agttttttgtattgtattttaagttatttgtgtgccgcgtg 29428306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 24932893 - 24933037
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| |||| ||| |||||||    
T  24932893 aagcagatctagtgaagcacatatggacaaagtttggaatgtatagtgattgaagatgatttgtatcgtactaaataaattacctgtgcgttctatgctt 24932992  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||  || ||||||||||||| ||||||  |||||||||    
T  24932993 agtttgttgtcttccattttaagttatttgtgtgttgcgtgttta 24933037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 631954 - 631822
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  631954 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 631855  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  631854 -gtttgttgtcttgcattttaagctatttgtgtg 631822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 17960893 - 17961025
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  17960893 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 17960992  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  17960993 -gtttgttgtcttgcattttaagctatttgtgtg 17961025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 34839022 - 34838890
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  34839022 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 34838923  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  34838922 -gtttgttgtcttgcattttaagctatttgtgtg 34838890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 8219383 - 8219251
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||| | ||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  8219383 aagcagatattgtgaagcgcatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 8219284  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  8219283 -gtttgttgtcttacattttaagctatttgtgtg 8219251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 26654068 - 26654123
Alignment:
Q  81 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgt 136  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||    
T  26654068 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgt 26654123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 26760037 - 26760092
Alignment:
Q  81 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgt 136  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||||    
T  26760037 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgt 26760092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 10569403 - 10569539
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10569403 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgctt 10569502  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccg 140  Q
    |||||||||  || ||||||||||||| |||||||||    
T  10569503 agtttgttgtcttgcattttaagttatttgtgtgccg 10569539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 4577433 - 4577293
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  4577433 aagcagatctagtgaaacacatatggacaaagtttggaatgtatcgtaattgaagatgatttgtatcgtactaaataaattacttgtgtgttttatgctt 4577334  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| ||| ||||||||||||| |||||||||||||    
T  4577333 agtttgttgtattgcattttaagttatttgtgtgccgcgtg 4577293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 25032783 - 25032643
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25032783 aagcaaatctagtgaaacacatatggacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgctt 25032684  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||| ||| ||| ||||||||||||| | |||| ||||||    
T  25032683 agttttttgtattgcattttaagttatttatgtgtcgcgtg 25032643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 30647747 - 30647880
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  30647747 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 30647846  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgc 138  Q
     |||||||   || ||||||||| ||| |||||||    
T  30647847 -gtttgttatcttgcattttaagctatttgtgtgc 30647880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 34710301 - 34710162
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  34710301 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtattaaataaattacttgtgtgttgtgtgctt 34710202  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
     ||||||||  || ||||||||  ||| |||||| ||||||    
T  34710201 -gtttgttgtcttgcattttaaactatttgtgtgtcgcgtg 34710162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 27942933 - 27942801
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  27942933 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 27942834  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  27942833 -gtttgttgtcttgcattttaagctatttgtgtg 27942801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 27406676 - 27406807
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  27406676 aagcagatctagtgaaacacatatggataaagtttggaatgt-tctcgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 27406774  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  27406775 -gtttgttgtcttgcattttaagctatttgtgtg 27406807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 32976199 - 32976292
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgt 97  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  32976199 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgt 32976292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 40889337 - 40889205
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  40889337 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacaattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 40889238  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
      |||||||  || ||||||||| ||| ||||||    
T  40889237 -ctttgttgtcttgcattttaagctatttgtgtg 40889205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 31013489 - 31013578
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtg 93  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  31013489 aagcagatctagtgaagcacatatggacaaaatttggaatgtttcatgattgaagatgatttgtattgtactaaataaattatttgtgtg 31013578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 29618671 - 29618769
Alignment:
Q  50 tgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||  || | ||||||||||| |||||| ||||||||||    
T  29618671 tgattgaagatgatttgtatcgtactaaataaattacttgtgtcttgtatgcttagtttgttgtcttccgttttaagttatttgtgtgtcgcgtgttta 29618769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 23648845 - 23648945
Alignment:
Q  36 tttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtg 135  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| ||||    
T  23648845 tttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtg 23648943  T
Q  136 tg 137  Q
    ||    
T  23648944 tg 23648945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 23809727 - 23809627
Alignment:
Q  36 tttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtg 135  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| ||||    
T  23809727 tttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtg 23809629  T
Q  136 tg 137  Q
    ||    
T  23809628 tg 23809627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 13479508 - 13479575
Alignment:
Q  81 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||| |||| | ||||||||||    
T  13479508 aattacttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgcgtcgcgtgttta 13479575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 39238796 - 39238731
Alignment:
Q  83 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||||||||||||||||||||||||  || |||||||| |||| |||||| ||||||||||    
T  39238796 ttacttgtgtgttgtatgcttagtttgttgtcttccattttaaattatttgtgtgtcgcgtgttta 39238731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 3455111 - 3455050
Alignment:
Q  87 ttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||||||||||||||||||||  || ||||||||||||| ||||||  |||||||||    
T  3455111 ttgtgtgttgtatgcttagtttgttgtcttccattttaagttatttgtgtgttgcgtgttta 3455050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 31013608 - 31013650
Alignment:
Q  87 ttgtgtgttgtatgcttagtttgttgcatttcattttaagtta 129  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||    
T  31013608 ttgtgtgttgtgtgcttagtttgttgtattgcattttaagtta 31013650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 33164871 - 33164727
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33164871 aagcagatctagtgaagcacatatggacaaagtttggaatgtacagtggttgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgctt 33164772  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||  || ||||||||||||| |||||| ||||||||||    
T  33164771 agtttgttgtcttgcattttaagttatttgtgtgtcgcgtgttta 33164727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 31468565 - 31468433
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  31468565 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 31468466  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  31468465 -gtttgttgtcttgcattttaagctatttgtgtg 31468433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 17680895 - 17681034
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  17680895 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 17680994  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
     ||||||||  || ||||||||| ||| |||||| ||||||    
T  17680995 -gtttgttgtcttgcattttaagctatttgtgtgtcgcgtg 17681034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 17783802 - 17783666
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  17783802 aagcaaatctagtgaaacacatatggacaaaatttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgctggatgctt 17783703  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccg 140  Q
    |||||  || ||| ||||||||||||| |||||||||    
T  17783702 agttttctgtattgcattttaagttatttgtgtgccg 17783666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 10266591 - 10266730
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||| || ||    
T  10266591 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagattatttgtatcgtactaaataaattacttgtgtgttgtgtg-tt 10266689  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
     ||||||||  || ||||||||| ||| |||||| ||||||    
T  10266690 tgtttgttgtcttgcattttaagctatttgtgtgacgcgtg 10266730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 36230943 - 36230804
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| |||||||| |||||    
T  36230943 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttatatcgtactaaataaattacttatgtgttgtgtgctt 36230844  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
     ||||||||  || ||||||||| ||| ||| || ||||||    
T  36230843 -gtttgttgtcttgcattttaagctatttgtatgtcgcgtg 36230804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 47300131 - 47300270
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  47300131 aagcagatctagtgaagcacatatgaacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 47300230  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
     |||||||   || ||||||||| ||| |||||| ||||||    
T  47300231 -gtttgttatcttgcattttaagctatttgtgtgtcgcgtg 47300270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 48404765 - 48404636
Alignment:
Q  7 cagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagt 106  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||    
T  48404765 cagatctagtgaagcacatatggacaaagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacctgtgtgttgtgtgctt-gt 48404667  T
Q  107 ttgttgcatttcattttaagttatctgtgtg 137  Q
    ||||||  || ||||||||| ||| ||||||    
T  48404666 ttgttgtgttgcattttaagctatttgtgtg 48404636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 2477958 - 2478090
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  2477958 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 2478057  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  2478058 -gtttgttgtcttgcattttaagctatttgtgtg 2478090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 45239578 - 45239446
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  45239578 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 45239479  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  45239478 -gtttgttgtcttgcattttaagctatttgtgtg 45239446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 48387737 - 48387869
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  48387737 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 48387836  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  48387837 -gtttgttgtcttgcattttaagctatttgtgtg 48387869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 45455786 - 45455925
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||| ||||||||||||||||||||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||||| | |||||    
T  45455786 aagcagatctagtgaaccacatatggacaaagtttggaatgttttgtgattgaagattatttgtatcgtactaaataaattacttgtgtgttatgtgctt 45455885  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
     ||||||||  || ||||||||||||| |||||| ||||||    
T  45455886 -gtttgttgtcttgcattttaagttatttgtgtgtcgcgtg 45455925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 51520632 - 51520544
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgt 92  Q
    ||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| ||| |||||||||||| |||||||||    
T  51520632 aagcagatctagtgaagcacatatggacaaagtttgggatgtttcgtgattgaagatgatttgtatggtactaaataaactacttgtgt 51520544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 8468746 - 8468625
Alignment:
Q  15 gtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgca 114  Q
    ||||||| ||||| || |||||||||||||| || |||||||||||||||| |||||| |||||||||| ||||||||||||| ||||| ||||||||      
T  8468746 gtgaagctcatattgataaagtttggaatgtttcgtgattgaagatgatttgtatcgtgctaaataaatgacttgtgtgttgtgtgctt-gtttgttgtc 8468648  T
Q  115 tttcattttaagttatctgtgtg 137  Q
    || ||||||||| ||| ||||||    
T  8468647 ttgcattttaagctatttgtgtg 8468625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 43739362 - 43739268
Alignment:
Q  53 ttgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| |||||| ||||||||||    
T  43739362 ttgaagatgatttgtatcatactaaataaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtgtcgcgtgttta 43739268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 23093143 - 23093074
Alignment:
Q  67 tatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtg 137  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| ||||||    
T  23093143 tatcgtactaaataaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtg 23093074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 44929007 - 44929068
Alignment:
Q  83 ttacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||||| |||||||||||||| ||  ||| ||||||||||||| |||||||||||||    
T  44929007 ttacttgtgtgatgtatgcttagttttttttattgcattttaagttatttgtgtgccgcgtg 44929068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 45363052 - 45362988
Alignment:
Q  84 tacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||||||||||| ||||||||||  || |||||||| |||| |||||| || |||||||    
T  45363052 tacttgtgtgttgtatgcatagtttgttgtcttgcattttaacttatatgtgtgtcgtgtgttta 45362988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 2780435 - 2780556
Alignment:
Q  8 agatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtt 107  Q
    |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2780435 agatctagtgaaacacatatggacaaagtttgaaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtatgcttagtt 2780534  T
Q  108 tgttgcatttcattttaagtta 129  Q
    ||||| ||| ||||||||||||    
T  2780535 tgttgtattgcattttaagtta 2780556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 5146354 - 5146494
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  5146354 aagcagatctagtgaagcacgtatgaacaaagtttggaatgtatcgtgattgaagatgatttgtatcatactaaataaattatttgtgtgttgtatgctt 5146453  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    |||||||||  || ||||||||||||| |||||| ||||||    
T  5146454 agtttgttgtcttgcattttaagttatttgtgtgtcgcgtg 5146494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 12855457 - 12855325
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  12855457 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt 12855358  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  12855357 -gtttgttgtcttgcattttaagctatttgtgtg 12855325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 36855416 - 36855556
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||| ||||| |||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  36855416 aagcaaatctattgaaacacatatgaacaaagtttggaatgtatcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgctgtatgctt 36855515  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||| ||| ||| ||||||||||||| |||||| ||||||    
T  36855516 agttttttgtattgcattttaagttatttgtgtgtcgcgtg 36855556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 8852495 - 8852363
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||    
T  8852495 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcatgattgaagatgatttgtatcgtactaaataaattacttatgtgttgtgtgctt 8852396  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  8852395 -gtttgttgtcttgcattttaagctatttgtgtg 8852363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 31192646 - 31192737
Alignment:
Q  8 agatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtat 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31192646 agatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattatttgtgtgttgtat 31192737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 7588132 - 7588264
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  7588132 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgtgtgttgtgtgctt 7588231  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  7588232 -gtttgttgtcttgcattttaagctatttgtgtg 7588264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 22351243 - 22351375
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  22351243 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaagtaaattacttgtgtgttgtgtgctt 22351342  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  22351343 -gtttgttgtcttacattttaagctatttgtgtg 22351375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 30822212 - 30822344
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||    
T  30822212 aagcagatctagtgaagcacatatggacaaagtttggaatgtttcacgattgaagatgatttgtatcgaactaagtaaattacttgtgtgttgtgtgctt 30822311  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  30822312 -gtttgttgtcttgcattttaagctatttgtgtg 30822344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 6363365 - 6363272
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgt 97  Q
    |||||||||||||||||| |||||||||| |||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||    
T  6363365 aagcagatctagtgaagcgcatatggacagagtttggaatgtttcgtgattgaagatgatttgtatcgtactaaataaattacttgtgtgttgt 6363272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 39433637 - 39433716
Alignment:
Q  16 tgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgtt 95  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||||||||||    
T  39433637 tgaaacacatatggacaaagtttgaaatgtatcgtgattgaagatgatttgtatcgtattaaataaattacttgtgtgtt 39433716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 31173885 - 31173969
Alignment:
Q  60 tgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    |||||||||||||| ||||||||||| |||||| ||||||||||| ||||||| ||| ||||||||||||| |||||||||||||    
T  31173885 tgatttctatcgtattaaataaattatttgtgtattgtatgcttaatttgttgtattgcattttaagttatttgtgtgccgcgtg 31173969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 39433732 - 39433795
Alignment:
Q  81 aattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||    
T  39433732 aattacttgtgtgttgtatgcttagtttgttgtattgcattttaagttatttgtgtgtcgcgtg 39433795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 926876 - 926934
Alignment:
Q  78 ataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgt 136  Q
    ||||||||||||||||||||||||||||||||||| | | ||||||||||||| |||||    
T  926876 ataaattacttgtgtgttgtatgcttagtttgttgtaatgcattttaagttatttgtgt 926934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 7763203 - 7763267
Alignment:
Q  84 tacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtgttta 148  Q
    |||||||||||||||||||||||||||||  || |||||||| |||| |||||| ||||||||||    
T  7763203 tacttgtgtgttgtatgcttagtttgttgtcttgcattttaacttatatgtgtgtcgcgtgttta 7763267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 1987461 - 1987408
Alignment:
Q  91 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    |||||||||||||||||| ||| ||| |||||| |||||| |||||||||||||    
T  1987461 gtgttgtatgcttagttttttgtattgcattttgagttatttgtgtgccgcgtg 1987408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 31192736 - 31192770
Alignment:
Q  114 atttcattttaagttatctgtgtgccgcgtgttta 148  Q
    ||||||||||||||||| |||||||||||||||||    
T  31192736 atttcattttaagttatttgtgtgccgcgtgttta 31192770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 16218581 - 16218634
Alignment:
Q  91 gtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||| ||||||||||||||  || ||||||||||||| |||||| ||||||    
T  16218581 gtgttgtgtgcttagtttgttgtcttgcattttaagttatttgtgtgtcgcgtg 16218634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 44280349 - 44280289
Alignment:
Q  76 aaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtg 137  Q
    |||||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| ||||||    
T  44280349 aaataaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtg 44280289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 170160 - 170300
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||    
T  170160 aagcagatctagtgaagcacatatggtcaaagtttggaatgtttcacgattgaagatgatttgtatcgtactaattaagttacttgtgtgttgtgtgctt 170259  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    |||||||||  || |||| |||||||| |||||||||||||    
T  170260 agtttgttgtcttgcattctaagttatttgtgtgccgcgtg 170300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 4954 - 5086
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    ||||||||||||||||| || ||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  4954 aagcagatctagtgaaggacctatggacaaagtttggaatgtttcgtgattgaagatgatttatatcgtactaaataaattacttgtgtgttgtgtgctt 5053  T
Q  104 agtttgttgcatttcattttaagttatctgtgtg 137  Q
     ||||||||  || ||||||||| ||| ||||||    
T  5054 -gtttgttgtcttgcattttaagctatttgtgtg 5086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 30178 - 30308
Alignment:
Q  4 aagcagatctagtgaagcacatatggacaaagtttggaatgtatcatgattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgctt 103  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||           ||||||||||||||||||||||||||    
T  30178 aagcagatctagtgaagcacatctggacaaagtttggaatgtatcgtgattgaagatgatttc----------cataaattacttgtgtgttgtatgctt 30267  T
Q  104 agtttgttgcatttcattttaagttatctgtgtgccgcgtg 144  Q
    ||||||||| | | ||||||||||||| |||||||||||||    
T  30268 agtttgttgtaatgcattttaagttatttgtgtgccgcgtg 30308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 56811 - 56896
Alignment:
Q  51 gattgaagatgatttctatcgtactaaataaattacttgtgtgttgtatgcttagtttgttgcatttcattttaagttatctgtgtg 137  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||  || ||||||||| ||| ||||||    
T  56811 gattgaagatgatttgtatcgtactaaataaattacttgtgtgttgtgtgctt-gtttgttgtcttgcattttaagctatttgtgtg 56896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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