View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6917_low_35 (Length: 220)

Name: NF6917_low_35
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6917_low_35
NF6917_low_35
[»] chr3 (3 HSPs)
chr3 (18-203)||(43046781-43046966)
chr3 (21-53)||(2081001-2081033)
chr3 (21-61)||(27896088-27896128)
[»] chr5 (4 HSPs)
chr5 (20-60)||(9174935-9174975)
chr5 (23-60)||(38047790-38047827)
chr5 (20-52)||(16863902-16863934)
chr5 (21-61)||(35299885-35299925)
[»] chr8 (5 HSPs)
chr8 (21-51)||(7616308-7616338)
chr8 (24-61)||(10758167-10758204)
chr8 (21-50)||(27465471-27465500)
chr8 (25-57)||(10438007-10438039)
chr8 (26-58)||(38874830-38874862)
[»] chr2 (3 HSPs)
chr2 (20-58)||(9478076-9478114)
chr2 (23-59)||(10563472-10563508)
chr2 (20-52)||(33267438-33267470)
[»] chr7 (2 HSPs)
chr7 (23-52)||(25833431-25833460)
chr7 (24-60)||(40371565-40371601)
[»] chr4 (2 HSPs)
chr4 (23-52)||(54277242-54277271)
chr4 (23-51)||(51808810-51808838)
[»] chr1 (2 HSPs)
chr1 (21-49)||(23402151-23402179)
chr1 (20-52)||(29415513-29415545)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 43046781 - 43046966
Alignment:
Q  18 tgtaatagataagttcaaataagtcaatctaaacatgcccttagcacgatgatgactgtgacaactactgtaatttacatcacaaaacaaaacataataa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43046781 tgtaatagataagttcaaataagtcaatctaaacatgcccttagcacgatgatgactgtgacaactactgtaatttacatcacaaaacaaaacataataa 43046880  T
Q  118 tcaaaacactgagaaagaacagcattcttactgatgaggcctgtgtccaccagaagagaaaccatcagttgaagtgacataaagca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43046881 tcaaaacactgagaaagaacagcattcttactgatgaggcctgtgtccaccagaagagaaaccatcagttgaagtgacataaagca 43046966  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 2081033 - 2081001
Alignment:
Q  21 aatagataagttcaaataagtcaatctaaacat 53  Q
    |||||||||||||||||||||||||| ||||||    
T  2081033 aatagataagttcaaataagtcaatccaaacat 2081001  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 27896128 - 27896088
Alignment:
Q  21 aatagataagttcaaataagtcaatctaaacatgcccttag 61  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  27896128 aatagataagttcaaataagccaatccaaacaggcccttag 27896088  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 9174935 - 9174975
Alignment:
Q  20 taatagataagttcaaataagtcaatctaaacatgccctta 60  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  9174935 taatagataagctcaaataagtcaatccaaacatgccctta 9174975  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 38047827 - 38047790
Alignment:
Q  23 tagataagttcaaataagtcaatctaaacatgccctta 60  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  38047827 tagataagttcaagtaagccaatctaaacatgccctta 38047790  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 16863902 - 16863934
Alignment:
Q  20 taatagataagttcaaataagtcaatctaaaca 52  Q
    ||||||||| |||||||||||||||||||||||    
T  16863902 taatagatacgttcaaataagtcaatctaaaca 16863934  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 35299885 - 35299925
Alignment:
Q  21 aatagataagttcaaataagtcaatctaaacatgcccttag 61  Q
    |||||||||| ||||||||||||||| ||||| ||||||||    
T  35299885 aatagataagctcaaataagtcaatccaaacaggcccttag 35299925  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 7616338 - 7616308
Alignment:
Q  21 aatagataagttcaaataagtcaatctaaac 51  Q
    |||||||||||||||||||||||||||||||    
T  7616338 aatagataagttcaaataagtcaatctaaac 7616308  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 10758204 - 10758167
Alignment:
Q  24 agataagttcaaataagtcaatctaaacatgcccttag 61  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  10758204 agataagttcaaataagtcaattcaaacatgcccttag 10758167  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 27465471 - 27465500
Alignment:
Q  21 aatagataagttcaaataagtcaatctaaa 50  Q
    ||||||||||||||||||||||||||||||    
T  27465471 aatagataagttcaaataagtcaatctaaa 27465500  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 10438007 - 10438039
Alignment:
Q  25 gataagttcaaataagtcaatctaaacatgccc 57  Q
    |||||||||||||||||||||| ||||||||||    
T  10438007 gataagttcaaataagtcaatccaaacatgccc 10438039  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 38874830 - 38874862
Alignment:
Q  26 ataagttcaaataagtcaatctaaacatgccct 58  Q
    ||||| |||||||||||||||||||||||||||    
T  38874830 ataagctcaaataagtcaatctaaacatgccct 38874862  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 9478076 - 9478114
Alignment:
Q  20 taatagataagttcaaataagtcaatctaaacatgccct 58  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  9478076 taatagataagttcaaataagtcaatcccaacatgccct 9478114  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 10563508 - 10563472
Alignment:
Q  23 tagataagttcaaataagtcaatctaaacatgccctt 59  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  10563508 tagataagttcaaataagtcaatccaaacaggccctt 10563472  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 33267470 - 33267438
Alignment:
Q  20 taatagataagttcaaataagtcaatctaaaca 52  Q
    ||||||||||||||||||||||||||| |||||    
T  33267470 taatagataagttcaaataagtcaatccaaaca 33267438  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 25833431 - 25833460
Alignment:
Q  23 tagataagttcaaataagtcaatctaaaca 52  Q
    ||||||||||||||||||||||||||||||    
T  25833431 tagataagttcaaataagtcaatctaaaca 25833460  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 40371601 - 40371565
Alignment:
Q  24 agataagttcaaataagtcaatctaaacatgccctta 60  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  40371601 agataagctcaaataagtcaatccaaacatgccctta 40371565  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 54277271 - 54277242
Alignment:
Q  23 tagataagttcaaataagtcaatctaaaca 52  Q
    ||||||||||||||||||||||||||||||    
T  54277271 tagataagttcaaataagtcaatctaaaca 54277242  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 51808838 - 51808810
Alignment:
Q  23 tagataagttcaaataagtcaatctaaac 51  Q
    |||||||||||||||||||||||||||||    
T  51808838 tagataagttcaaataagtcaatctaaac 51808810  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 23402151 - 23402179
Alignment:
Q  21 aatagataagttcaaataagtcaatctaa 49  Q
    |||||||||||||||||||||||||||||    
T  23402151 aatagataagttcaaataagtcaatctaa 23402179  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 29415545 - 29415513
Alignment:
Q  20 taatagataagttcaaataagtcaatctaaaca 52  Q
    ||||||||||||||||||||||| |||||||||    
T  29415545 taatagataagttcaaataagtcgatctaaaca 29415513  T

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