View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_4 (Length: 517)
Name: NF6917_low_4
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Original strand, 4643180 - 4643656
Alignment:
| Q |
19 |
agtggtgaatgtaaatttgtcgacacttcatgtgagaatttgaatgctgaaagttctcctcaacctacaaaacctctgattaaggaggaagaagattttg |
118 |
Q |
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| T |
4643180 |
agtggtgaatgtaaatttgtcgacacttcatgtgagaatttgaatgctgaaagttctcctcaacctacaaaacatctgattaaggaggaagaagattttg |
4643279 |
T |
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| Q |
119 |
ccaagggttccaagggtgagagtggtgcttcattgaatccacttaataaaaattttctcggcgacgctggtggcaatacatctctgaataaaacaagggt |
218 |
Q |
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| T |
4643280 |
ccaagggttccaagggtgagggtggtgcttcattgaatccacttaataaaaattttctcggcgacgctggtggcaatacatctctgaataaaacaagggt |
4643379 |
T |
|
| Q |
219 |
ttttaacgatccgtgtgagaataaagctaatcggaagaagatgaaagtaagatgcatactattggttcttatcatatactacaaatttatgaatgtaaac |
318 |
Q |
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| T |
4643380 |
ttttaacgatccgtgtgagaataaagctaatcggaagaagatgaaagtaagatgcatactattggttcttatcatatactacaaatttatgaatgtaaac |
4643479 |
T |
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| Q |
319 |
ttgtctcttagttgctaaatgctgacatgaatacctatgctgcccttcctctttctctgtaccatttgcatacacatgctcatgaagttgttatctatgg |
418 |
Q |
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| T |
4643480 |
ttgtctcttagttgctaaatgctgacatgaatacctatgctgcccttcctctttctctgtaccatttgcatacacatgctcatgaagttgttatctatgg |
4643579 |
T |
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| Q |
419 |
cactagcatggtacataagtacaaattacttcccaagttttgtataactggtcaatattcccaacatgatgtatctg |
495 |
Q |
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| T |
4643580 |
cactagcatggtacataaatacaaattacttcccaagttttgtataactggtcaatattcccaacatgatgtatctg |
4643656 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 40802260 - 40802232
Alignment:
| Q |
241 |
aaagctaatcggaagaagatgaaagtaag |
269 |
Q |
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| T |
40802260 |
aaagctaatcggaagaagatgaaagtaag |
40802232 |
T |
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