View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_6 (Length: 431)
Name: NF6917_low_6
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 72 - 416
Target Start/End: Original strand, 27442575 - 27442922
Alignment:
| Q |
72 |
ttaccaaaacatttgtagcaacacaaaaagagtcccacataaccgctacatcacatagtcgacaagtacaaaacaaaccattaaacaacatgacca---- |
167 |
Q |
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| T |
27442575 |
ttaccaaaacacttatagcaacacaaaaagagtcccacataacccctacatcacatagtcgacaagtacaaaacaaaccattaaacaatatgaccagagc |
27442674 |
T |
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| Q |
168 |
--caaaacacctcaacagcaactcaaaagagtaagattagccaacacacaacaaaaacactacctcattagacgatctctcggaacgatcccacaaccac |
265 |
Q |
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| T |
27442675 |
cacaaaacacctcaacagcaactcaaaagagtaagattagccaaaacacaacaaaaatactacctcattagacaatctctcggaacgatcccacaaccac |
27442774 |
T |
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| Q |
266 |
ccctaaaacctttatggaatgggccgaaaaattaatgacattatgcaattttgcatatcagtatctttaatggaatggccgtctccatgggatgcatttc |
365 |
Q |
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| T |
27442775 |
ccctaaaacctttatggaatgggccgaaaaattaatgacattatgtgattttgcatatcagtatctt---tcgaatggccgtctccatgggatgcatttc |
27442871 |
T |
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| Q |
366 |
ctcaggtggaaatttctacagttttctgcagtgccaacatcaataccatta |
416 |
Q |
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| T |
27442872 |
ctcaggtggaaatttctacagttttctgcggtgtcaatatcaataccatta |
27442922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 27443341 - 27443419
Alignment:
| Q |
276 |
tttatggaatgggccgaaaaattaatgacattatgcaattttgcatatcagtatctttaatggaatggccgtctccatg |
354 |
Q |
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| T |
27443341 |
tttatggaatgggccgaaaaatgaatgacattatgcgattttgcatttcagtatcttgaatggtatggccgtctccatg |
27443419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 27406092 - 27406172
Alignment:
| Q |
272 |
aacctttatggaatgggccgaaaaattaatgacattatgcaattttgcatatcagtatctttaatggaatggccgtctccatg |
354 |
Q |
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| T |
27406092 |
aacctttatggaatgggccgaaa--ttaatgacattatgtgatgttgcatatcagtatcttgaatggaatggccgtctccatg |
27406172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 27442340 - 27442374
Alignment:
| Q |
18 |
aatatcaataataaaagatatgttatatataaaaa |
52 |
Q |
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| T |
27442340 |
aatatcaataataaaagatatattatatataaaaa |
27442374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 32876527 - 32876494
Alignment:
| Q |
18 |
aatatcaataataaaagatatgttatatataaaa |
51 |
Q |
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| T |
32876527 |
aatatcaataataaaagatatattatatataaaa |
32876494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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