View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_7 (Length: 427)
Name: NF6917_low_7
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 7369983 - 7370375
Alignment:
| Q |
14 |
ggacatcacagagatgattgaaattctacacagctgcacatattttccaaactaannnnnnnnnaatcatttaacatgtttataataatgttttcaagtg |
113 |
Q |
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| T |
7369983 |
ggacataacagagatgattgaaattctacacagctgcacatattttccaaactaatttttttt-aatc-tttaacatgtttataatttttttttcaagtg |
7370080 |
T |
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| Q |
114 |
aaacatttattagatcacaacatcaaataaaaatatgatttggacacacacttgagtgatatgcatttttatgtgtgtgtaatcatttttatttggggtc |
213 |
Q |
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| T |
7370081 |
caacatttattagatc-caacatcaaataaaaatatgatttggacaaacacttgagtgatatgcatttttatgtgtgtgtaatcatttttatttggggtc |
7370179 |
T |
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| Q |
214 |
aaaaacaatcctatcagatagtaaattgtcttcagaatggggccaaaaacttaatacaaacactaataagttctgtttttccaacatcaagaatgcaaag |
313 |
Q |
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| T |
7370180 |
aaaaacaattctatcagatagtaaattgtcttcagaatggggccaaaaacttaatacaatcactaataagttctgtttttccaacatcaagaatgcaaag |
7370279 |
T |
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| Q |
314 |
ctatcactcaaagaagcattgtggttcagttctcacattcaattcaactaactaatccattcatacaaccgtttgaataagaaaccatctcttaac |
409 |
Q |
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| T |
7370280 |
ctatcactcaaacaagcattgtggttcagtcctcacattcaattcaactaactaatccattcatacaaccatttgaataagaaaccatctcttaac |
7370375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 405
Target Start/End: Original strand, 7352835 - 7352892
Alignment:
| Q |
350 |
attcaattcaactaactaatccattca--tacaaccgtttgaataagaaaccatctct |
405 |
Q |
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| T |
7352835 |
attcaattcaactaactaatccattcatttacaaccatttgagtaagaaacaatctct |
7352892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 377
Target Start/End: Original strand, 7365203 - 7365260
Alignment:
| Q |
321 |
tcaaagaagcattgtggttcagttctca-cattcaattcaactaactaatccattcat |
377 |
Q |
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| T |
7365203 |
tcaaagaagcattttttttcagttcttaacattcaattcaactaactaacccattcat |
7365260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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