View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6917_low_9 (Length: 415)
Name: NF6917_low_9
Description: NF6917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6917_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 41854331 - 41853924
Alignment:
| Q |
1 |
taccaatgggagtcctctgagcgaggactttgatgggaccttccaagatcaccaagaagttaaaaataaatcaaagaaaaggtaaatttattagacacac |
100 |
Q |
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| T |
41854331 |
taccaatgggagtcctctgagcgaggactttgatgggaccttccaagatcaccaagaagttaaaaataaatcaaagaaaaggtaaatttattagacacac |
41854232 |
T |
|
| Q |
101 |
ttggtaacagttttataccacagaaatcagctaaattttggttatactaaaactcctttgtcctaacaannnnnnnnn-cctgaaattgctttcagaaag |
199 |
Q |
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| T |
41854231 |
ttggtaacagttttataccacagaaatcagctaaattttggttatactaaaactcctttgtcctaacaacttttttcttcctgaaattgctttcagaaag |
41854132 |
T |
|
| Q |
200 |
gttgcgcccaaatggatggatcagataagagtgagctgtgacagtagccttgaaggaccaaatgaagatggctacaactggagaaaatatggtcagaaag |
299 |
Q |
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| T |
41854131 |
gttgcgcccaaatggatggatcagataagagtgagctgtgacagtagccttgaaggaccaaatgaagatggctacaactggagaaaatatggtcagaaag |
41854032 |
T |
|
| Q |
300 |
atatccttggcaccaaacatccaaggtgagaggaattctaatatcatgcttaagaaaaaaccataagaattcttgaattatgtataaattgcatttacct |
399 |
Q |
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| T |
41854031 |
atatccttggcaccaaacatccaaggtgagaggaattctaatatcatgcttaagaaaaaaccataagaattcttgaattatgtataaattgcatttacct |
41853932 |
T |
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| Q |
400 |
gtgatgtc |
407 |
Q |
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| T |
41853931 |
gtgatgtc |
41853924 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 41261617 - 41261569
Alignment:
| Q |
278 |
tggagaaaatatggtcagaaagatatccttggcaccaaacatccaaggt |
326 |
Q |
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| T |
41261617 |
tggagaaaatatggtcagaaagacatccttggagccatgcatccaaggt |
41261569 |
T |
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