View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6918_high_5 (Length: 502)
Name: NF6918_high_5
Description: NF6918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6918_high_5 |
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| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold0380 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 13219276 - 13219764
Alignment:
| Q |
1 |
attgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagcacatattcctccggggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13219276 |
attgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagatattttagaagcacatattcctccggggg |
13219375 |
T |
|
| Q |
101 |
gtagattggggcgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcattaggggtcattacttc |
200 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13219376 |
gtagattgggccgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcattaggggtcattacttc |
13219475 |
T |
|
| Q |
201 |
tttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219476 |
tttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgca |
13219575 |
T |
|
| Q |
301 |
ggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttag |
400 |
Q |
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|
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219576 |
ggatttattatgacaggggcttttgctcatggagcgatattttttattcgggattacaatcccgaacagaatgaggataatgtattggcaagaatgttag |
13219675 |
T |
|
| Q |
401 |
agcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccataatgatgtc |
489 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13219676 |
agcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccataatgatgtc |
13219764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 47842098 - 47842150
Alignment:
| Q |
250 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcagg |
302 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
47842098 |
caagactttactactcaaactgcgttatatactcatcatcaatacattgcagg |
47842150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 47842174 - 47842226
Alignment:
| Q |
245 |
tagcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
297 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47842174 |
tagcacaggattttactactcaagctgcgttatatactcatcatcaatacatt |
47842226 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 13217052 - 13217095
Alignment:
| Q |
1 |
attgcaattctttttctcattgctggtcatatgtatagaactaa |
44 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
13217052 |
attgcaattctttttctcattgccggtcatatgtatagaactaa |
13217095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
318 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
378 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| |||| ||||||||| ||||||||||| |
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|
| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 238433 - 237952
Alignment:
| Q |
1 |
attgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttagaagcacatattcctccggggg |
100 |
Q |
| |
|
|||||| || ||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||| ||||| |||||||||| |||| ||||||||||| |
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|
| T |
238433 |
attgcatttatttttctcattgccggtcacatgtatcgaactaacttcggaattgggcacagtattaaagatcttttagaagcgcatactcctccggggg |
238334 |
T |
|
| Q |
101 |
gtagattggggcgtggacataagggtctttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcattaggggtcattacttc |
200 |
Q |
| |
|
|| |||| |||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||| |
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|
| T |
238333 |
gtcgattagggcgtgggcataagggcctttatgacacaatcaacaattcgattcattttcagttaggtcttgctctagcttctttaggggttattacttc |
238234 |
T |
|
| Q |
201 |
tttggtagctcaacacatgtactctttgcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgca |
300 |
Q |
| |
|
|| ||||||||||| ||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |
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|
| T |
238233 |
cttagtagctcaacatatgtactctttacctccttatgcattcatagcacaagactttactactcaagctgctttatatactcatcaccaatatattgcg |
238134 |
T |
|
| Q |
301 |
ggctttattatgacaggggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttag |
400 |
Q |
| |
|
|| || || |||||||||||||||||||||||||| || ||||| ||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
238133 |
gggttcatcatgacaggggcttttgctcatggagctatttttttcattagggattacaatccggaacagaatgaggataatgtattggcaagaatgttag |
238034 |
T |
|
| Q |
401 |
agcacaaagaagctatcatatcccatttaagttgggccagcctatttctggggttccatactttgggactttatgtccataa |
482 |
Q |
| |
|
| || ||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| ||||| |||||||| ||||| |
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|
| T |
238033 |
accataaagaagctatcatatctcatttaagttgggctagcctctttctaggattccataccttgggcctttatgttcataa |
237952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 146 - 488
Target Start/End: Original strand, 10996334 - 10996673
Alignment:
| Q |
146 |
attcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttat |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
10996334 |
attcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttacctacttatgcgtttat |
10996433 |
T |
|
| Q |
246 |
agcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatatttttt |
345 |
Q |
| |
|
||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||| ||||| ||||| |
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|
| T |
10996434 |
agcgcaagactttacagctcaagctgcggtatatactcatcatcaattcattgcaggatttattatgacatgagcttttgctcatggaacgata-ttttt |
10996532 |
T |
|
| Q |
346 |
attcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctat |
445 |
Q |
| |
|
||| | ||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
10996533 |
atttgagattacaatcccgaacataatgagaataatgtattggca--gatgttagagcacaaagaagctatcatatcccatttaagttgagccatcctat |
10996630 |
T |
|
| Q |
446 |
ttctggggttccatactttgggactttatgtccataatgatgt |
488 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10996631 |
ttctagggttccatactttgggactttatgtccataatgatgt |
10996673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 3065837 - 3065875
Alignment:
| Q |
261 |
tactcaagctgcgttatatactcatcatcaatacattgc |
299 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
3065837 |
tactcaagctgccttatatagtcatcatcaatacattgc |
3065875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 18177042 - 18176963
Alignment:
| Q |
1 |
attgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattttaga |
80 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| | |||||||| || |||||| ||| |||||||| |
|
|
| T |
18177042 |
attgcaattctttttctcattgccggtcatatgtatagaactaattggggtattggtcatggtataagagatattttaga |
18176963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 18013484 - 18013446
Alignment:
| Q |
261 |
tactcaagctgcgttatatactcatcatcaatacattgc |
299 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
18013484 |
tactcaagctgccttatatagtcatcatcaatacattgc |
18013446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14541398 - 14541323
Alignment:
| Q |
1 |
attgcaattctttttctcattgctggtcatatgtatagaactaacttcggtattgggcacagtataaaagagattt |
76 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||| | |||||| || |||||||||| |||| |
|
|
| T |
14541398 |
attgcaattctttttctcattgtcggtcatatgtataaaactaactgggatattggtcatggtataaaagatattt |
14541323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 32566683 - 32566650
Alignment:
| Q |
188 |
gggtcattacttctttggtagctcaacacatgta |
221 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
32566683 |
gggtcattacttctttggtagctcaatacatgta |
32566650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 39047958 - 39048001
Alignment:
| Q |
1 |
attgcaattctttttctcattgctggtcatatgtatagaactaa |
44 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
39047958 |
attgcaattctttttctcattaccggtcatatgtatagaactaa |
39048001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15680 - 15723
Alignment:
| Q |
1 |
attgcaattctttttctcattgctggtcatatgtatagaactaa |
44 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
15680 |
attgcaattctttttcacattgccagtcatatgtatagaactaa |
15723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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