View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6918_high_6 (Length: 405)

Name: NF6918_high_6
Description: NF6918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6918_high_6
NF6918_high_6
[»] chr2 (12 HSPs)
chr2 (1-146)||(45421016-45421161)
chr2 (14-145)||(43627009-43627140)
chr2 (83-145)||(35694213-35694275)
chr2 (148-197)||(28873024-28873073)
chr2 (83-145)||(13549704-13549766)
chr2 (12-145)||(31086135-31086267)
chr2 (12-145)||(32145412-32145544)
chr2 (83-146)||(22052207-22052270)
chr2 (11-145)||(33547379-33547514)
chr2 (83-145)||(26681461-26681523)
chr2 (83-145)||(31594134-31594196)
chr2 (83-130)||(9949777-9949824)
[»] chr3 (12 HSPs)
chr3 (1-146)||(30167842-30167987)
chr3 (12-146)||(32004492-32004623)
chr3 (12-145)||(6176976-6177109)
chr3 (12-145)||(23601282-23601415)
chr3 (25-146)||(49732430-49732548)
chr3 (83-145)||(25873610-25873672)
chr3 (12-145)||(29308917-29309049)
chr3 (83-145)||(2813998-2814060)
chr3 (73-124)||(6517892-6517943)
chr3 (83-145)||(7146621-7146683)
chr3 (1-146)||(13447980-13448122)
chr3 (14-55)||(7146553-7146594)
[»] scaffold0418 (1 HSPs)
scaffold0418 (14-146)||(7186-7318)
[»] chr4 (16 HSPs)
chr4 (14-146)||(7663735-7663867)
chr4 (12-145)||(12776705-12776839)
chr4 (4-127)||(3130495-3130615)
chr4 (12-146)||(8655570-8655702)
chr4 (12-145)||(20673218-20673351)
chr4 (12-146)||(47540437-47540568)
chr4 (11-146)||(33312907-33313042)
chr4 (91-145)||(1121142-1121196)
chr4 (12-145)||(55298131-55298265)
chr4 (12-145)||(8487479-8487612)
chr4 (14-146)||(23279118-23279250)
chr4 (86-145)||(23873974-23874033)
chr4 (16-146)||(5817678-5817806)
chr4 (14-65)||(1121554-1121605)
chr4 (83-130)||(2630978-2631025)
chr4 (83-145)||(25875188-25875249)
[»] chr1 (17 HSPs)
chr1 (12-146)||(25639960-25640094)
chr1 (12-135)||(36305294-36305416)
chr1 (12-148)||(47115799-47115933)
chr1 (12-145)||(36928677-36928809)
chr1 (12-146)||(4644524-4644656)
chr1 (12-146)||(14366121-14366253)
chr1 (12-145)||(32353795-32353928)
chr1 (12-146)||(21527672-21527804)
chr1 (83-145)||(37530144-37530206)
chr1 (12-148)||(52336174-52336307)
chr1 (12-61)||(17921591-17921640)
chr1 (12-127)||(38231196-38231311)
chr1 (12-145)||(48073930-48074064)
chr1 (12-129)||(48266232-48266347)
chr1 (83-145)||(3692207-3692269)
chr1 (83-130)||(14119344-14119391)
chr1 (14-146)||(9528250-9528380)
[»] chr7 (12 HSPs)
chr7 (12-146)||(15654202-15654336)
chr7 (17-146)||(46623218-46623347)
chr7 (12-145)||(21277549-21277681)
chr7 (12-145)||(28326865-28326998)
chr7 (50-121)||(37675787-37675857)
chr7 (36-146)||(9546273-9546380)
chr7 (11-145)||(3632311-3632445)
chr7 (12-55)||(12383165-12383208)
chr7 (12-145)||(13439561-13439695)
chr7 (12-130)||(30385709-30385827)
chr7 (12-145)||(3104412-3104545)
chr7 (83-129)||(43104891-43104937)
[»] chr8 (8 HSPs)
chr8 (12-145)||(7451862-7451994)
chr8 (1-136)||(19385217-19385349)
chr8 (14-78)||(12531140-12531204)
chr8 (83-145)||(2871771-2871833)
chr8 (12-145)||(16421507-16421639)
chr8 (83-130)||(28542583-28542630)
chr8 (12-65)||(12220710-12220763)
chr8 (80-137)||(12218523-12218580)
[»] chr5 (6 HSPs)
chr5 (11-146)||(6264695-6264832)
chr5 (12-145)||(34858191-34858325)
chr5 (12-146)||(10487403-10487535)
chr5 (85-145)||(34480538-34480598)
chr5 (83-146)||(15500143-15500206)
chr5 (83-145)||(32917897-32917959)
[»] chr6 (10 HSPs)
chr6 (1-146)||(33629599-33629741)
chr6 (20-145)||(13754983-13755107)
chr6 (12-146)||(1682552-1682683)
chr6 (12-145)||(15673334-15673467)
chr6 (83-145)||(19348854-19348916)
chr6 (83-145)||(25317434-25317496)
chr6 (83-145)||(26204928-26204990)
chr6 (83-145)||(8873324-8873386)
chr6 (83-145)||(23347964-23348026)
chr6 (83-123)||(4596466-4596506)
[»] scaffold0287 (1 HSPs)
scaffold0287 (11-145)||(13640-13774)
[»] scaffold0220 (1 HSPs)
scaffold0220 (36-146)||(22710-22817)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 45421016 - 45421161
Alignment:
Q  1 gtccctaaactacaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaa 100  Q
    |||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  45421016 gtccctaaagcacaaggtgtgccttagagactactacaggaaccaagagttacaacaaatacaaaaccaacccaacaagactacattagccaatacccaa 45421115  T
Q  101 acaaacaagagggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  45421116 acaaacaagagggcatgaccaccactgctgggtaccataaacaaaa 45421161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 43627009 - 43627140
Alignment:
Q  14 aaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagaggg 113  Q
    ||||||||||||||| ||||| |||  ||||||||||||||||   ||||||   ||  |||||  |  ||||||||||||| |||||||||||||||||    
T  43627009 aaggtgtgccttagagactaccacaaaaaccaagagttacaacggttacaaacaaaaaacaacagaaaaacattagccaatacccaaacaaacaagaggg 43627108  T
Q  114 tatgaccaccactgctgggtaccataaacaaa 145  Q
    | ||||||||||||||| || ||| |||||||    
T  43627109 tttgaccaccactgctgagtcccaaaaacaaa 43627140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 35694213 - 35694275
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |||||||    
T  35694213 acattagccaatatccaaacaaacaagagggtttgaccaccactgctgagttccaaaaacaaa 35694275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 28873073 - 28873024
Alignment:
Q  148 tcttgtgtcatttttaaataaaattgtagccacaaattcaccgtgcattt 197  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28873073 tcttgtgtcatttttaaataaaattgtagccacaaattcaccatgcattt 28873024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 13549704 - 13549766
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||| || ||| |||||||    
T  13549704 acattagccaatacccaaacaaacaagagggtttgaccaccactgctgagttccaaaaacaaa 13549766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 31086267 - 31086135
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||||| ||||||| |||||| ||| |||||||||||||||| | ||||||     | || || || |||||||||| |||||||||||||||||||    
T  31086267 acaaggtgtaccttagagactacttcagaaaccaagagttacaacgattacaaacatgtcacagca-gaatacattagcctatatccaaacaaacaagag 31086169  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||  |||||||||||| ||  ||||| |||||||    
T  31086168 ggcttgaccaccactgttgtataccaaaaacaaa 31086135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 32145412 - 32145544
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    |||||||||||||||||||||||| ||| || ||||||||||||||| || |||   | | || ||  || ||||||||| ||| |||||||||||||||    
T  32145412 acaaggtgtgccttagaaactactgcagaaatcaagagttacaacaattagaaatagagcacagcagaacaacattagcctatacccaaacaaacaagag 32145511  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||   ||||| |||||||| |||||| |||||||    
T  32145512 ggctagacca-cactgctgtgtaccaaaaacaaa 32145544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 22052207 - 22052270
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| || ||| ||||||||    
T  22052207 acattagccaatacccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaaa 22052270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 33547379 - 33547514
Alignment:
Q  11 tacaaggtgtgcctt-agaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaag 109  Q
    ||||||||||||||| ||| |||||  ||| |||||||||||||||| | |||| |   ||| |||||  |  || |||||||||| |||||||||||||    
T  33547379 tacaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacatacaaaacacaacagaaaaaccttagccaatacccaaacaaacaag 33547478  T
Q  110 agggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||  ||||||||||||||| || ||| |||||||    
T  33547479 agggcttgaccaccactgctgagtcccaaaaacaaa 33547514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 26681461 - 26681523
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| || || ||| |||||||    
T  26681461 acattagccaatacccaaacaaacaagagggtttgaccaccactgttgagttccaaaaacaaa 26681523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 31594134 - 31594196
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| || ||| |||||||    
T  31594134 acattagccaatacccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaa 31594196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 9949824 - 9949777
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctg 130  Q
    ||||||||||||| |||||||||||||||||  |||||||||||||||    
T  9949824 acattagccaatacccaaacaaacaagagggcttgaccaccactgctg 9949777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 30167987 - 30167842
Alignment:
Q  1 gtccctaaactacaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaa 100  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  30167987 gtccctaaagcacaaggtgtgccttagaaactactacacgaaccaagagttacaacaaatacaaaaccaacccaacaagactacattagccaatacccaa 30167888  T
Q  101 acaaacaagagggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||    
T  30167887 acaaacaagagggcatgaccaccactgccgggtaccataaacaaaa 30167842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 32004492 - 32004623
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    |||| ||||||| |||| ||||| ||||||||||||||||||||||||   | || ||||||||||   |||||| |||| ||| ||||||| |||||||    
T  32004492 acaacgtgtgccatagagactacaacaggaaccaagagttacaacaaa---acaaccaacccaacagagctacatcagcctatacccaaacatacaagag 32004588  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    || |||||||||||||||| |||||| | ||||||    
T  32004589 ggcatgaccaccactgctgagtaccaaacacaaaa 32004623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 6177109 - 6176976
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||| ||||||||||| |||||  ||| |||||||||||||||||| ||||||   ||| || ||  |  ||||||| ||||| |||||||||||||||    
T  6177109 acaagatgtgccttagagactacctcagaaaccaagagttacaacaattacaaacaaaacacaccagaaaaacattagtcaatacccaaacaaacaagag 6177010  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||  ||||||||||||||| || ||| |||||||    
T  6177009 ggcgtgaccaccactgctgagtcccaaaaacaaa 6176976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 23601282 - 23601415
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||||   ||||||   ||| |||||  |  ||||||||||||| |||||||||||||||    
T  23601282 acaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacataaaaacattagccaatacccaaacaaacaagag 23601381  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||  |||||||||||| || || ||| |||||||    
T  23601382 ggcttgaccaccactgttgagtcccaaaaacaaa 23601415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 49732548 - 49732430
Alignment:
Q  25 tagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagagggtatgaccacca 124  Q
    |||| ||||| ||||||| ||||||||||||||||   | || ||||||||||   |||||| |||| ||| ||||||| ||||||||| ||||||||||    
T  49732548 tagagactacaacaggaatcaagagttacaacaaa---acaaccaacccaacagagctacatcagcctatacccaaacacacaagagggcatgaccacca 49732452  T
Q  125 ctgctgggtaccataaacaaaa 146  Q
    |||||| |||||| | ||||||    
T  49732451 ctgctgagtaccaaacacaaaa 49732430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 25873672 - 25873610
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||| || ||| |||||||    
T  25873672 acattagccaatacccaaacaaacaagagggtttgaccaccactgctgagttccaaaaacaaa 25873610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 29308917 - 29309049
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||| ||||||||||| |||||  ||| ||||||||||||||||   ||||||   ||| ||||| ||  |||||| |||||| |||||||||||||||    
T  29308917 acaagatgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaaca-gaaaacattacccaatacccaaacaaacaagag 29309015  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||  ||||||||||||||| || ||| |||||||    
T  29309016 ggcttgaccaccactgctgagtcccaaaaacaaa 29309049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 2814060 - 2813998
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||||||||||| ||||||||||||||||| |||||||||| ||||| || ||| |||||||    
T  2814060 acattagccaatacccaaacaaacaagagggcatgaccaccattgctgagtcccaaaaacaaa 2813998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 6517943 - 6517892
Alignment:
Q  73 caacaagactacattagccaatatccaaacaaacaagagggtatgaccacca 124  Q
    ||||||||  |||||||||||||||||||||||||||||||  |||||||||    
T  6517943 caacaagaaaacattagccaatatccaaacaaacaagagggcttgaccacca 6517892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 7146621 - 7146683
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||||||| |||| ||||||||||||| |||| ||||||||||||||| || ||| |||||||    
T  7146621 acattagcaaatacccaaacaaacaagggggtttgaccaccactgctgagtcccaaaaacaaa 7146683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 13447980 - 13448122
Alignment:
Q  1 gtccctaaactacaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaa 100  Q
    |||||||||  |||||||||||| |||| |||||  ||||||||||||||||||| |||   | || ||||||||||   |||||| | || |||  |||    
T  13447980 gtccctaaagcacaaggtgtgccatagagactacagcaggaaccaagagttacaataaa---acaaccaacccaacagagctacatcaacctatactcaa 13448076  T
Q  101 acaaacaagagggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    ||| ||||||| | | ||||||||||| || |||||| | ||||||    
T  13448077 acacacaagagagcaagaccaccactgttgagtaccaaacacaaaa 13448122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 7146553 - 7146594
Alignment:
Q  14 aaggtgtgccttagaaactactacaggaaccaagagttacaa 55  Q
    ||||||||||||||| ||||| |||| |||||||||||||||    
T  7146553 aaggtgtgccttagagactaccacagaaaccaagagttacaa 7146594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 7186 - 7318
Alignment:
Q  14 aaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagaggg 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |    
T  7186 aaggtgtgccttagagactactacaggaaccaagagttacaacaaatacaaaaccaacccaacaagactacattagccaatacccaaacaaacaagagag 7285  T
Q  114 tatgaccaccactgctgggtaccataaacaaaa 146  Q
     ||||||||||||| ||||||||| ||||||||    
T  7286 catgaccaccactgatgggtaccaaaaacaaaa 7318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 7663867 - 7663735
Alignment:
Q  14 aaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagaggg 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |    
T  7663867 aaggtgtgccttagagactactacaggaaccaagagttacaacaaatacaaaaccaacccaacaagactacattagccaatacccaaacaaacaagagag 7663768  T
Q  114 tatgaccaccactgctgggtaccataaacaaaa 146  Q
     ||||||||||||| ||||||||| ||||||||    
T  7663767 catgaccaccactgatgggtaccaaaaacaaaa 7663735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 12776839 - 12776705
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacc-caacaagactacattagccaatatccaaacaaacaaga 110  Q
    ||||||||||||| ||| |||||  |||||||||||||||||||| | |||||||  || | |||||  |  ||||||||||||| ||||||||||||||    
T  12776839 acaaggtgtgcctaagagactacctcaggaaccaagagttacaacgattacaaaaaaaaacacaacagaaaaacattagccaatacccaaacaaacaaga 12776740  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||  ||||||||||||||| || ||| |||||||    
T  12776739 gggcttgaccaccactgctgagtcccaaaaacaaa 12776705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 3130615 - 3130495
Alignment:
Q  4 cctaaactacaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaaca 103  Q
    |||||| ||||||||||||| |||| ||||| ||||||||||||||||||||||||   | || ||||||||||   |||||| |||| ||| |||||||    
T  3130615 cctaaagtacaaggtgtgccgtagagactacaacaggaaccaagagttacaacaaa---acaaccaacccaacagagctacatcagcctatacccaaaca 3130519  T
Q  104 aacaagagggtatgaccaccactg 127  Q
     ||||||||| | |||||||||||    
T  3130518 cacaagagggcaagaccaccactg 3130495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 8655702 - 8655570
Alignment:
Q  12 acaaggtgtgccttagaaactacta-caggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||||||||||| |||| ||||| | ||||||||||||||||||||||| |||||  ||||||||||  ||||||| |||| ||| ||||||| |  |||    
T  8655702 acaaggtgtgccatagagactacaaacaggaaccaagagttacaacaaa-acaaa--caacccaacataactacatcagcctatacccaaacacatgaga 8655606  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    ||||| |||||||||||||| |||||| | ||||||    
T  8655605 gggtaagaccaccactgctgagtaccaaacacaaaa 8655570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 20673218 - 20673351
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||||||||| ||| |||||  |||||||||||||||||||| | ||||||   ||| |||||  |  |||||||| |||| |||||||||||||||    
T  20673218 acaaggtgtgcctaagagactacctcaggaaccaagagttacaacgattacaaacaaaacacaacataaaaacattagcaaatacccaaacaaacaagag 20673317  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
     |  ||||||||||||||| || ||| |||||||    
T  20673318 agcttgaccaccactgctgagtcccaaaaacaaa 20673351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 47540437 - 47540568
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    |||| ||||||  |||| ||||| ||||||||||||||||||||||||   | || ||||||||||    ||||| |||| ||| ||||||| |||||||    
T  47540437 acaaagtgtgctatagatactacaacaggaaccaagagttacaacaaa---acaaccaacccaacagagttacatcagcctatacccaaacacacaagag 47540533  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    || |||||||||||||||| |||||| | ||||||    
T  47540534 ggcatgaccaccactgctgagtaccaaacacaaaa 47540568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 33312907 - 33313042
Alignment:
Q  11 tacaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||||||||||||||||| |||||  |||||| ||||||||| ||| | ||||||   ||| |||||  |   |||||||||||  ||||||||||||||    
T  33312907 tacaaggtgtgccttagagactacctcaggaatcaagagttataacgattacaaacaaaacacaacagaaaatcattagccaatgcccaaacaaacaaga 33313006  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    |||  ||||||||||||||| || ||| ||||||||    
T  33313007 gggcttgaccaccactgctgagtcccaaaaacaaaa 33313042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 1121196 - 1121142
Alignment:
Q  91 caatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  1121196 caatacccaaacaaacaagagggcatgaccaccactgttgggtaccaaaaacaaa 1121142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 55298131 - 55298265
Alignment:
Q  12 acaaggtgtgcctt-agaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||||||||||||| ||| |||||  ||| |||||||||||||||| | |||| |   ||| |||||  |  || |||||||||| ||||||||||||||    
T  55298131 acaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacatacaaaacacaacagaaaaaccttagccaatacccaaacaaacaaga 55298230  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||  ||||||||||||||| || ||| |||||||    
T  55298231 gggcttgaccaccactgctgagtcccaaaaacaaa 55298265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 8487612 - 8487479
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||| ||||||| ||| |||||  ||| |||||||||||| ||||| ||||||   ||| || ||  |  ||||||| ||||| |||||||||||||||    
T  8487612 acaagatgtgcctaagagactacctcagaaaccaagagttataacaattacaaacaaaacacaccagaaaaacattagtcaatacccaaacaaacaagag 8487513  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||  ||||||||||||||| || ||| |||||||    
T  8487512 ggcgtgaccaccactgctgagtcccaaaaacaaa 8487479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 23279118 - 23279250
Alignment:
Q  14 aaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagaggg 113  Q
    ||||||||||||||| ||| | |||| |||||| ||||||||||| ||||||    || || ||   | |||||| || ||| |||||||||||||||||    
T  23279118 aaggtgtgccttagagactgccacagaaaccaaaagttacaacaattacaaaccacacacagcagagcaacattaacctatacccaaacaaacaagaggg 23279217  T
Q  114 tatgaccaccactgctgggtaccataaacaaaa 146  Q
     | ||||||||||| ||||||||  ||||||||    
T  23279218 caagaccaccactgttgggtaccgaaaacaaaa 23279250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 23874033 - 23873974
Alignment:
Q  86 ttagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||||||||| |||||||||||||||||  ||||||||||||||| || ||| |||||||    
T  23874033 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaa 23873974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 5817806 - 5817678
Alignment:
Q  16 ggtgtgccttagaaactacta-caggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagagggt 114  Q
    |||||||| |||| ||||| | |||||||||||| ||| |||||| |||||  ||||||||||   |||||| |||| ||| ||||||| | |||||||     
T  5817806 ggtgtgccatagagactacaaacaggaaccaagaattaaaacaaa-acaaa--caacccaacagagctacatcagcctatacccaaacacataagagggc 5817710  T
Q  115 atgaccaccactgctgggtaccataaacaaaa 146  Q
    | |||||||||||||| |||||| | ||||||    
T  5817709 aagaccaccactgctgagtaccaaacacaaaa 5817678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 1121605 - 1121554
Alignment:
Q  14 aaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaa 65  Q
    ||||||||||||||||||||| ||||   |||||||||||||||| ||||||    
T  1121605 aaggtgtgccttagaaactaccacagagtccaagagttacaacaattacaaa 1121554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 2630978 - 2631025
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctg 130  Q
    ||||||||||||| | |||||||||||||||  |||||||||||||||    
T  2630978 acattagccaatacctaaacaaacaagagggcttgaccaccactgctg 2631025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 25875249 - 25875188
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||| || || ||| |||||||    
T  25875249 acattagccaat-tccaaacaaacaaaagggtttgaccaccactgatgcgtgccaaaaacaaa 25875188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 25640094 - 25639960
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||    
T  25640094 acaaggtctgctttagagactactacaggaaccaagagttacaacaaatacaaaaccaacccaacaggactacattagtcaatacccaaacaaacaagag 25639995  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    |||||||||||||||||||||||||| ||||||||    
T  25639994 ggtatgaccaccactgctgggtaccaaaaacaaaa 25639960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 36305294 - 36305416
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||  || ||||||| ||||||||||||||||| |||||||||||||||    
T  36305294 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattacaaac-catcccaacaggactacattagccaatagccaaacaaacaagag 36305392  T
Q  112 ggtatgaccaccactgctgggtac 135  Q
    || ||||||||||||| |||||||    
T  36305393 ggcatgaccaccactgttgggtac 36305416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 47115799 - 47115933
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    |||||||||| |||||| ||||| |||| ||||||||||||||||||||||||   |||||||||||  ||||||||||| ||| ||||||| |||||||    
T  47115799 acaaggtgtgtcttagagactacaacagaaaccaagagttacaacaaatacaac--caacccaacaaagctacattagcctatacccaaacacacaagag 47115896  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaaaat 148  Q
    || ||||||||||||||||||||||| || |||||||    
T  47115897 ggcatgaccaccactgctgggtaccaaaagcaaaaat 47115933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 36928677 - 36928809
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||  ||||||||   |||||| |||||||||| |||||||||||||||    
T  36928677 acaaggtgtgccttagagactaccataggaaccaagagttacaacaattacaaac-caacccaatcggactacgttagccaatacccaaacaaacaagag 36928775  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||  | |||||||||| ||||||||| |||||||    
T  36928776 ggcttaaccaccactgttgggtaccaaaaacaaa 36928809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 4644524 - 4644656
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    |||||||||||| |||| ||||| ||| |||||||||||||||||||| ||  || ||||||||||   |||||| |||| ||| ||||||| |||||||    
T  4644524 acaaggtgtgccatagagactacaacaagaaccaagagttacaacaaaaac--aaccaacccaacagagctacatcagcctatacccaaacacacaagag 4644621  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    || | |||||||||||||| |||||| | ||||||    
T  4644622 ggcacgaccaccactgctgagtaccaaacacaaaa 4644656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 14366253 - 14366121
Alignment:
Q  12 acaaggtgtgccttagaaactacta-caggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||||||||||| |||| ||| | | |||||||||||||||||||||||   | || ||||||||||   |||||| |||| ||| ||||||| ||||||    
T  14366253 acaaggtgtgccatagagactgcaaacaggaaccaagagttacaacaaa---acaaccaacccaacagagctacatcagcctatacccaaacacacaaga 14366157  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    ||| |||||||||||||||| |||||| | ||||||    
T  14366156 gggcatgaccaccactgctgagtaccaaacacaaaa 14366121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 32353928 - 32353795
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||||||||||||| |||||  ||  ||||||||||||||||   ||||||   ||| |||||  |  ||||||||||||| |||||||||||||||    
T  32353928 acaaggtgtgccttagagactacctcaaaaaccaagagttacaacggttacaaacaaaacacaacagaaaaacattagccaatacccaaacaaacaagag 32353829  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||  ||||||||||||||| || ||| |||||||    
T  32353828 ggcttgaccaccactgctgagtcccaaaaacaaa 32353795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 21527672 - 21527804
Alignment:
Q  12 acaaggtgtgccttagaaactacta-caggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||||||||||| |||| ||||| | ||||||||||||||||||||||| |||||  ||||||||||   |||||| |||| ||| ||||||| | ||||    
T  21527672 acaaggtgtgccatagagactacaaacaggaaccaagagttacaacaaa-acaaa--caacccaacagagctacatcagcctatacccaaacacataaga 21527768  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    ||| | |||||||||||||| |||||| | ||||||    
T  21527769 gggcaagaccaccactgctgagtaccaaacacaaaa 21527804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 37530144 - 37530206
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| || ||| |||||||    
T  37530144 acattagccaatatccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaa 37530206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 52336174 - 52336307
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    |||| ||||||| |||| | ||| |||||| ||||||||| |||||||   | || ||||||||||   |||||| |||| ||| ||||||| |||||||    
T  52336174 acaatgtgtgccatagagattacaacaggagccaagagttgcaacaaa---acaaccaacccaacagagctacatcagcctatacccaaacacacaagag 52336270  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaaaat 148  Q
    || |||||||||||||||| |||||| | ||||||||    
T  52336271 ggcatgaccaccactgctgagtaccaaacacaaaaat 52336307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 17921640 - 17921591
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaata 61  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  17921640 acaaggtgtgccttagagactactacagaaaccaagagttacaacaaata 17921591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 38231196 - 38231311
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||||||||||||| || ||  ||| ||||||||||||||||   ||||||   ||| || || ||  ||||||||||||| |||||||||||||||    
T  38231196 acaaggtgtgccttagagacaacatcagaaaccaagagttacaacggttacaaacaaaacacaccaggaaaacattagccaatacccaaacaaacaagag 38231295  T
Q  112 ggtatgaccaccactg 127  Q
    ||  ||||||||||||    
T  38231296 ggcgtgaccaccactg 38231311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 48074064 - 48073930
Alignment:
Q  12 acaaggtgtgcctt-agaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||||||||||||| ||| |||||  ||| |||||||||||||||| | |||| |   ||| |||||  |  || |||||||||| ||||||||||||||    
T  48074064 acaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacatacaaaacacaacagaaaaaccttagccaatacccaaacaaacaaga 48073965  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||  ||||||||||||||| || ||| |||||||    
T  48073964 gggcttgaccaccactgctgagtcccaaaaacaaa 48073930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 48266347 - 48266232
Alignment:
Q  12 acaaggtgtgccttagaaactacta-caggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||| ||||||| |||| ||||| | |||||||||||||||||||||||   | || |||| |||||   |||||| | || ||| ||||||| ||||||    
T  48266347 acaatgtgtgccatagagactacaaacaggaaccaagagttacaacaaa---acaaccaacacaacagagctacatcaacctatacccaaacacacaaga 48266251  T
Q  111 gggtatgaccaccactgct 129  Q
    |||||||||||||||||||    
T  48266250 gggtatgaccaccactgct 48266232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 3692207 - 3692269
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||||||||||||  ||||||||||||||||  ||||||||||||||| || ||| |||||||    
T  3692207 acattagccaatactcaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaa 3692269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 14119344 - 14119391
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctg 130  Q
    |||||| ||||||| ||||||||||||||||  |||||||||||||||    
T  14119344 acattacccaatattcaaacaaacaagagggcttgaccaccactgctg 14119391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 9528380 - 9528250
Alignment:
Q  14 aaggtgtgccttagaaactacta-caggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagagg 112  Q
    |||||||||| |||| ||||| | |||||||||||||||||| |||| |||||  ||||||||||    ||||| |||| ||| ||||||| | ||||||    
T  9528380 aaggtgtgccatagagactacaaacaggaaccaagagttacaccaaa-acaaa--caacccaacagagttacatcagcctatacccaaacacataagagg 9528284  T
Q  113 gtatgaccaccactgctgggtaccataaacaaaa 146  Q
      | |||||||||||||| |||||| | ||||||    
T  9528283 acaagaccaccactgctgagtaccaaacacaaaa 9528250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 15654336 - 15654202
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |||| ||||||||||    
T  15654336 acaaggtgtgtcttagagactactacaggaaccaagagttacaacaattacaaaaccaacccaacatgactacattagccaatacccaagcaaacaagag 15654237  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    || ||||||| ||||||||||||||| ||||||||    
T  15654236 ggcatgaccatcactgctgggtaccaaaaacaaaa 15654202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 46623218 - 46623347
Alignment:
Q  17 gtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagagggtat 116  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||    
T  46623218 gtgtgtcttagagactactacaggaatcaagagttacaacaaatacaaaatcaacccaacatgactacattaaccaatacccaaacaaacaagagggcat 46623317  T
Q  117 gaccaccactgctgggtaccataaacaaaa 146  Q
    |||||||||| |||||||||| ||||||||    
T  46623318 gaccaccactactgggtaccaaaaacaaaa 46623347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 21277681 - 21277549
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||  |  ||||||  |||||| |||||||||| |||||||||||||||    
T  21277681 acaaggtgtgccttagacactaccacaggaaccaagagttacaacaattacaaac-cgtcccaaccggactacgttagccaatacccaaacaaacaagag 21277583  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    || ||||||||||||||||||||||| |||||||    
T  21277582 ggcatgaccaccactgctgggtaccaaaaacaaa 21277549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 28326865 - 28326998
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||||   ||||||   ||  |||||  |  ||||||||||||| |||||||||||||||    
T  28326865 acaaggtgtgccttagagactaccacagaaaccaagagttacaacggttacaaacaaaaaacaacagaaaaacattagccaatacccaaacaaacaagag 28326964  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||| ||||| ||||||||| || ||| |||||||    
T  28326965 ggtttgaccgccactgctgagtcccaaaaacaaa 28326998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 37675787 - 37675857
Alignment:
Q  50 ttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagagggtatgacca 121  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||    
T  37675787 ttacaacaattataaaatcaacccaacatgactacattagccaata-ccaaacaaacaagagggcatgacca 37675857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 9546273 - 9546380
Alignment:
Q  36 acaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtac 135  Q
    |||||||||||||||||||||||| |||||  ||||||||||   |||||| |||| ||| ||||||| | ||||||| | |||||||||||||| ||||    
T  9546273 acaggaaccaagagttacaacaaa-acaaa--caacccaacagagctacatcagcctatacccaaacacataagagggcaagaccaccactgctgagtac 9546369  T
Q  136 cataaacaaaa 146  Q
    || | ||||||    
T  9546370 caaacacaaaa 9546380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 3632311 - 3632445
Alignment:
Q  11 tacaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||||||||||||||||| |||||  ||  ||| |||||||||||||| ||||||   ||| || ||  |  | ||||| ||||| ||||||||||||||    
T  3632311 tacaaggtgtgccttagagactacctcaaaaactaagagttacaacaattacaaacaaaacacaccagaaaaatattagtcaatacccaaacaaacaaga 3632410  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||  ||||||||||||||| || ||| |||||||    
T  3632411 gggcgtgaccaccactgctgagtcccaaaaacaaa 3632445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 12383208 - 12383165
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaa 55  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  12383208 acaaggtgtgccttggaaactactgcaggaaccaagagttacaa 12383165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 13439561 - 13439695
Alignment:
Q  12 acaaggtgtgcctt-agaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||||||||||||| ||| |||||  ||| |||||||||||||||| | |||| |   ||| |||||  |  || |||||||||| ||||||||||||||    
T  13439561 acaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacatacaaaacacaacagaaaaaccttagccaatacccaaacaaacaaga 13439660  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||  |||||| |||||||| || ||| |||||||    
T  13439661 gggcttgaccaacactgctgagtcccaaaaacaaa 13439695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 30385709 - 30385827
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||||   ||||||    || || ||  |  ||||||||||||| |||||||||||||||    
T  30385709 acaaggtgtgccttagagactacatcagaaaccaagagttacaacggttacaaacaagacacaccagaaaaacattagccaatacccaaacaaacaagag 30385808  T
Q  112 ggtatgaccaccactgctg 130  Q
    ||| ||||| || ||||||    
T  30385809 ggtttgaccgcccctgctg 30385827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 3104412 - 3104545
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    |||| |||||||||||| |||| | ||| |||||||||||||||| | | ||||   | | |||||  |  ||| ||||| |||||||||||||||||||    
T  3104412 acaaagtgtgccttagagactattgcagaaaccaagagttacaacgattgcaaacagagcacaacagaaaaacagtagcctatatccaaacaaacaagag 3104511  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||  |||||||| || || ||||||| ||||||    
T  3104512 ggttagaccaccattgttgtgtaccatgaacaaa 3104545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 43104891 - 43104937
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgct 129  Q
    |||||| |||||| |||||||||||||||||| |||| |||||||||    
T  43104891 acattaaccaatacccaaacaaacaagagggtttgactaccactgct 43104937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 7451862 - 7451994
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||| ||||||||||| ||||| | ||||||||||||||||||||| ||||||  |||||||||  |||||| |||||||||| ||||| |||||||||    
T  7451862 acaagctgtgccttagagactaccataggaaccaagagttacaacaattacaaac-caacccaaccggactacgttagccaatacccaaataaacaagag 7451960  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||  |||||||||||| ||||||||| |||||||    
T  7451961 ggcttgaccaccactgttgggtaccaaaaacaaa 7451994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 19385349 - 19385217
Alignment:
Q  1 gtccctaaactacaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaa 100  Q
    |||||||||  | |||||||||| |||| ||||| | ||||||||||||||||||||||   | || ||||||||||   |||||| |||| ||| ||||    
T  19385349 gtccctaaagcataaggtgtgccatagagactacaataggaaccaagagttacaacaaa---acaaccaacccaacagagctacatcagcctatacccaa 19385253  T
Q  101 acaaacaagagggtatgaccaccactgctgggtacc 136  Q
    ||| ||||||||| |||||||||||||||| |||||    
T  19385252 acacacaagagggcatgaccaccactgctgagtacc 19385217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 12531204 - 12531140
Alignment:
Q  14 aaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaa 78  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||    
T  12531204 aaggtgtgccttagaaactattacaggaaccaagagttacaacaattacaaaaccaactcaacaa 12531140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 2871771 - 2871833
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||| || ||| |||||||    
T  2871771 acattagccaatacccaaacaaacaagagggtttgaccaccactgctgagtcccaaaaacaaa 2871833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 16421639 - 16421507
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||| ||||||||||| |||||  ||| ||||||||||||||||   ||||||   ||| ||||| ||  | ||||||||||| |||||||||||||||    
T  16421639 acaagatgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaaca-gaaaatattagccaatacccaaacaaacaagag 16421541  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||  ||||||||||||||| || ||| |||||||    
T  16421540 ggcttgaccaccactgctgagttccaaaaacaaa 16421507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 28542583 - 28542630
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctg 130  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||    
T  28542583 acattagccaatacccaaacaaacaagagggtttgaccaccactgctg 28542630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 12220763 - 12220710
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaa 65  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||    
T  12220763 acaaggtgtgccttagagactaccacaggaatcaagagttacaacaattacaaa 12220710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 12218580 - 12218523
Alignment:
Q  80 actacattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtacca 137  Q
    ||||| |||||||||| ||| ||||| || |||| |||||||||||||||| ||||||    
T  12218580 actacgttagccaatacccagacaaagaaaagggcatgaccaccactgctgagtacca 12218523  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 6264832 - 6264695
Alignment:
Q  11 tacaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaa--cccaacaagactacattagccaatatccaaacaaacaa 108  Q
    |||||||||||||||||| |||||  ||| |||||||||||||||| | |||| || |||  | ||||   |  ||||||||||||| ||||||||||||    
T  6264832 tacaaggtgtgccttagagactacctcagaaaccaagagttacaacgattacacaaacaagacacaactgaaaaacattagccaatacccaaacaaacaa 6264733  T
Q  109 gagggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    |||||| ||||||||||||||| || ||| ||||||||    
T  6264732 gagggtttgaccaccactgctgagttccaaaaacaaaa 6264695  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 34858325 - 34858191
Alignment:
Q  12 acaaggtgtgcctt-agaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||||||||||||| ||| |||||  ||| |||||||||||||||| | |||| |   ||| |||||  |  || |||||||||| ||||||||||||||    
T  34858325 acaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacatacaaaacacaacagaaaaaccttagccaatacccaaacaaacaaga 34858226  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||  ||||||||||||||| || ||| |||||||    
T  34858225 gggcttgaccaccactgctgagtcccaaaaacaaa 34858191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 10487535 - 10487403
Alignment:
Q  12 acaaggtgtgccttagaaactact-acaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||||||||||| |||| |||||  ||| |||||||||||||||||||| |||||  ||||||||||   |||||| |||| ||| ||||||| | ||||    
T  10487535 acaaggtgtgccatagagactacacacatgaaccaagagttacaacaaa-acaaa--caacccaacagagctacatcagcctatacccaaacacataaga 10487439  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    ||| | ||||||||||| || |||||| | ||||||    
T  10487438 gggcaagaccaccactgttgagtaccaaacacaaaa 10487403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 34480538 - 34480598
Alignment:
Q  85 attagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||| || ||| |||||||    
T  34480538 attagccaatacccaaacaaacaagagggcttgaccaccactgctgagtgccaaaaacaaa 34480598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 15500206 - 15500143
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    |||||||||||||  |||| |||||||||||| ||||||||||||||| || ||| ||||||||    
T  15500206 acattagccaatactcaaataaacaagagggtttgaccaccactgctgagttccaaaaacaaaa 15500143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 32917897 - 32917959
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||||||||||| ||||||||||||||||   ||||||||||||||| || ||| |||||||    
T  32917897 acattagccaatacccaaacaaacaagaggacttgaccaccactgctgagttccaaaaacaaa 32917959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 33629599 - 33629741
Alignment:
Q  1 gtccctaaactacaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaa 100  Q
    |||||||||  |||||||||||| |||| ||||| ||| ||||||||||||||||||||   | || ||||||||||   |||||| |||| |||  |||    
T  33629599 gtccctaaagcacaaggtgtgccatagagactacaacaagaaccaagagttacaacaaa---acaaccaacccaacagagctacatcagcctatactcaa 33629695  T
Q  101 acaaacaagagggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    ||| ||||||||| ||||||||||||| || |||||| | ||||||    
T  33629696 acacacaagagggcatgaccaccactgttgagtaccaaacacaaaa 33629741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 13754983 - 13755107
Alignment:
Q  20 tgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagagggtatgac 119  Q
    ||||||||| |||||  ||| ||||||||||||||||   ||||||   ||| ||||| ||  ||||||||||||| |||||||||||||||||| ||||    
T  13754983 tgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaaca-gaaaacattagccaatacccaaacaaacaagagggtttgac 13755081  T
Q  120 caccactgctgggtaccataaacaaa 145  Q
    ||||||||||| || ||| |||||||    
T  13755082 caccactgctgagtcccaaaaacaaa 13755107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 1682552 - 1682683
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||||||   | || ||| ||||||   |||||| |||| ||| ||||||| |||||||    
T  1682552 acaaggtgtgccatagagactactacaagaaccaagagttacaacaaa---acaaccaatccaacagagctacatgagcctatacccaaacacacaagag 1682648  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaaa 146  Q
    |  ||||||||||||| || |||||| | ||||||    
T  1682649 gacatgaccaccactgttgagtaccaaacacaaaa 1682683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 15673334 - 15673467
Alignment:
Q  12 acaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagag 111  Q
    ||||||||||| ||||| |||||  ||| || |||||||||||||   ||||||   ||| || ||  || ||||||||||||| |||||||||||||||    
T  15673334 acaaggtgtgcgttagagactacctcagaaatcaagagttacaacgtttacaaacaaaacacaccagaacaacattagccaatacccaaacaaacaagag 15673433  T
Q  112 ggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||  ||||||||||||||| || ||| |||||||    
T  15673434 ggcttgaccaccactgctgagtcccaaaaacaaa 15673467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 19348854 - 19348916
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||| || ||| |||||||    
T  19348854 acattagccaatacccatacaaacaagagggtttgaccaccactgctgagttccaaaaacaaa 19348916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 25317434 - 25317496
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||||||||||||||||||||||||||||||  |||| |||||||||| || ||| |||||||    
T  25317434 acattagccaatatccaaacaaacaagagggcttgacgaccactgctgagttccaaaaacaaa 25317496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 26204928 - 26204990
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||||||||||||||||||||||||||||||  |||| |||||||||| || ||| |||||||    
T  26204928 acattagccaatatccaaacaaacaagagggcttgacgaccactgctgagttccaaaaacaaa 26204990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 8873386 - 8873324
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||||||||||| |||||||||||||||||  |||||||||||| || || ||| |||||||    
T  8873386 acattagccaatacccaaacaaacaagagggcttgaccaccactgttgagttccaaaaacaaa 8873324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 23348026 - 23347964
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtaccataaacaaa 145  Q
    ||||||| ||||| |||||||||||||||||  ||||||||||||||| || ||| |||||||    
T  23348026 acattagtcaatacccaaacaaacaagagggcgtgaccaccactgctgagtcccaaaaacaaa 23347964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 4596466 - 4596506
Alignment:
Q  83 acattagccaatatccaaacaaacaagagggtatgaccacc 123  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  4596466 acattagccaatacccaaacaaacaagagggtttgaccacc 4596506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 13774 - 13640
Alignment:
Q  11 tacaaggtgtgccttagaaactactacaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaaga 110  Q
    |||||||||||||||||| |||||  ||  ||| |||||||||||||| ||||||   ||| || ||  |  | ||||| ||||| ||||||||||||||    
T  13774 tacaaggtgtgccttagagactacctcaaaaactaagagttacaacaattacaaacaaaacacaccagaaaaatattagtcaatacccaaacaaacaaga 13675  T
Q  111 gggtatgaccaccactgctgggtaccataaacaaa 145  Q
    |||  ||||||||||||||| || ||| |||||||    
T  13674 gggcgtgaccaccactgctgagtcccaaaaacaaa 13640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 22817 - 22710
Alignment:
Q  36 acaggaaccaagagttacaacaaatacaaaatcaacccaacaagactacattagccaatatccaaacaaacaagagggtatgaccaccactgctgggtac 135  Q
    |||||||||||||||||||||||| |||||  ||||||||||  |||| || |||| ||| ||||| | | ||||||| | |||||||||||||| ||||    
T  22817 acaggaaccaagagttacaacaaa-acaaa--caacccaacagaactatatcagcctatacccaaatacataagagggcaagaccaccactgctgagtac 22721  T
Q  136 cataaacaaaa 146  Q
    || | ||||||    
T  22720 caaacacaaaa 22710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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