View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6918_high_8 (Length: 311)

Name: NF6918_high_8
Description: NF6918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6918_high_8
NF6918_high_8
[»] chr3 (3 HSPs)
chr3 (129-267)||(28538122-28538263)
chr3 (243-281)||(4638172-4638210)
chr3 (223-275)||(7648764-7648816)
[»] chr5 (4 HSPs)
chr5 (210-275)||(7616945-7617010)
chr5 (226-292)||(35638066-35638132)
chr5 (225-300)||(39728387-39728462)
chr5 (192-300)||(21149734-21149842)
[»] scaffold0045 (1 HSPs)
scaffold0045 (224-300)||(58064-58140)
[»] chr6 (3 HSPs)
chr6 (228-277)||(11142629-11142678)
chr6 (226-277)||(8888908-8888959)
chr6 (212-281)||(14107377-14107446)
[»] chr4 (1 HSPs)
chr4 (188-275)||(37369037-37369124)
[»] chr1 (1 HSPs)
chr1 (238-281)||(10507717-10507760)
[»] chr8 (3 HSPs)
chr8 (223-276)||(18091427-18091480)
chr8 (223-275)||(583840-583892)
chr8 (223-267)||(33401829-33401873)
[»] chr2 (2 HSPs)
chr2 (192-281)||(26805314-26805403)
chr2 (223-291)||(41187717-41187785)
[»] scaffold0209 (1 HSPs)
scaffold0209 (223-275)||(12600-12652)


Alignment Details
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 267
Target Start/End: Original strand, 28538122 - 28538263
Alignment:
Q  129 tggggggttaacggtgacggagtttatttttgtgccgttagtttatagnnnnnnnnnngttga---cttttgcatcggttttcaatccactaataacggg 225  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||           ||     |||||||| |||||||||||||||||||||||||    
T  28538122 tggggggttaacggtgacggagtttttttttgtgccgttagtttatagtttttttttttttcttttcttttgcaccggttttcaatccactaataacggg 28538221  T
Q  226 cgactaatttgactcaagcgtagaggtatgcacactggtcaa 267  Q
    ||||||||| |||||| ||||||||  ||||||||| |||||    
T  28538222 cgactaattcgactcatgcgtagagacatgcacactagtcaa 28538263  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 4638210 - 4638172
Alignment:
Q  243 gcgtagaggtatgcacactggtcaaacgttgtttctcct 281  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  4638210 gcgtagaggtatgcgcactggtcaagcgttgtttctcct 4638172  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 7648816 - 7648764
Alignment:
Q  223 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 275  Q
    |||||||||||  | |||  |||||||||||||| ||||||||||||||||||    
T  7648816 gggcgactaatccggctcgtgcgtagaggtatgcgcactggtcaaacgttgtt 7648764  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 7617010 - 7616945
Alignment:
Q  210 atccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 275  Q
    |||||| ||||| || |||||||| ||||||| ||||||||| ||||| |||||||||||||||||    
T  7617010 atccaccaataatggacgactaatctgactcatgcgtagaggcatgcatactggtcaaacgttgtt 7616945  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 35638066 - 35638132
Alignment:
Q  226 cgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaat 292  Q
    |||||||| ||||||  ||||||||||||||||||||  ||||||||||| ||||| | ||||||||    
T  35638066 cgactaatctgactcgtgcgtagaggtatgcacactgaccaaacgttgttcctcctgaaaatcgaat 35638132  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 39728462 - 39728387
Alignment:
Q  225 gcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaatctagtatt 300  Q
    |||||||||| ||||| |||||||||| ||||||||||| |||  ||||||||  || ||||||||| || |||||    
T  39728462 gcgactaattcgactcgagcgtagaggcatgcacactggccaagtgttgtttcctctgataatcgaacctggtatt 39728387  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 21149842 - 21149734
Alignment:
Q  192 cttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaa 291  Q
    |||| |||||||||||| |||||| |||   |||||||||||   ||||  ||||||||  |||| |||||||||||||||||| | ||| | |||||||    
T  21149842 ctttcgcatcggttttctatccaccaatggtgggcgactaatccaactcgtgcgtagagtcatgcgcactggtcaaacgttgttccccctgaaaatcgaa 21149743  T
Q  292 tctagtatt 300  Q
     || |||||    
T  21149742 cctggtatt 21149734  T

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Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 58064 - 58140
Alignment:
Q  224 ggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaatctagtatt 300  Q
    ||||||||||   ||||| |||||||||||| ||||||||||||||||||||||| ||   |||| |||||||||||    
T  58064 ggcgactaatccaactcatgcgtagaggtatacacactggtcaaacgttgtttcttctaggaatcaaatctagtatt 58140  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 11142678 - 11142629
Alignment:
Q  228 actaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttc 277  Q
    |||||| ||||||| ||||||||| |||| ||||||||||||||||||||    
T  11142678 actaatctgactcatgcgtagaggcatgcgcactggtcaaacgttgtttc 11142629  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 8888959 - 8888908
Alignment:
Q  226 cgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttc 277  Q
    ||||||||  |||||| |||||||||||||| |||||| |||||||||||||    
T  8888959 cgactaatccgactcatgcgtagaggtatgcgcactggccaaacgttgtttc 8888908  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 14107377 - 14107446
Alignment:
Q  212 ccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 281  Q
    |||||||||| |||||||||||  | |||| ||||||||| |||  |||||||||| ||||||| |||||    
T  14107377 ccactaataatgggcgactaatccggctcatgcgtagaggcatgtgcactggtcaagcgttgttcctcct 14107446  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 37369037 - 37369124
Alignment:
Q  188 ttgacttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 275  Q
    |||||||| |||||||||| | || ||| ||||  |||||||| ||  |||||  ||||||||| ||||||||||| |||||||||||    
T  37369037 ttgactttcgcatcggtttccgattcaccaatagtgggcgacttatccgactcgtgcgtagaggcatgcacactggacaaacgttgtt 37369124  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 10507760 - 10507717
Alignment:
Q  238 ctcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 281  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||    
T  10507760 ctcatgcgtagaggtatgcacactggccaaacgttgttcctcct 10507717  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 18091480 - 18091427
Alignment:
Q  223 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgttt 276  Q
    |||||||||||| | |||  ||||||||| |||| |||||||||||||||||||    
T  18091480 gggcgactaattcgcctcgtgcgtagaggcatgcgcactggtcaaacgttgttt 18091427  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 583892 - 583840
Alignment:
Q  223 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 275  Q
    |||||||||||  |||||| ||||||||| |||| |||||||||| |||||||    
T  583892 gggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 583840  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 33401829 - 33401873
Alignment:
Q  223 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaa 267  Q
    |||||||||||  |||||| ||||||||| |||||||||||||||    
T  33401829 gggcgactaatccgactcatgcgtagaggcatgcacactggtcaa 33401873  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 26805403 - 26805314
Alignment:
Q  192 cttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 281  Q
    ||||||||||||||||| | |||| ||    |||||||||||  |||||| ||||||||| |||  |||||| ||||||| |||||||||    
T  26805403 cttttgcatcggttttcgagccaccaaaggtgggcgactaatccgactcatgcgtagaggcatgtgcactggccaaacgtcgtttctcct 26805314  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 41187785 - 41187717
Alignment:
Q  223 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaa 291  Q
    ||||||||||| || |||| ||||||||| ||| |||||||||||  |||||| | ||| |||||||||    
T  41187785 gggcgactaatatgtctcatgcgtagaggcatggacactggtcaagtgttgttccccctcataatcgaa 41187717  T

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Target: scaffold0209 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 12652 - 12600
Alignment:
Q  223 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 275  Q
    |||||||||||  |||||| ||||||||| |||| |||||||||| |||||||    
T  12652 gggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 12600  T

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