View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6918_low_10 (Length: 313)
Name: NF6918_low_10
Description: NF6918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6918_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 9122310 - 9122588
Alignment:
| Q |
14 |
aatatctttccacagagcctcccatcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttagatctctgatacccaactct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
9122310 |
aatatctttccacagagcctcccatcttgtgatcaacctccaacgccactttcccaaaaggacaagattaaccaatcttagatctttgttacccaactct |
9122409 |
T |
|
| Q |
114 |
ccttcactcgtaggcttagaaacatgtgaaatgagataaaactatgcaaaaattatacatgacacaagagccccctattcaatcatttcaacgagcacaa |
213 |
Q |
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||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
9122410 |
ccttcactcttaggcttagaaacatgtgaaatgagataagaatatgcaaaaattatacatgacacaatagccccttattcaatcatttcaacgagcacaa |
9122509 |
T |
|
| Q |
214 |
atctcattattttttatgtatccttagcaactcttgttaaagaagtcttaagacattatgcaacaattttaaccatcaaatct |
296 |
Q |
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||||| |||||||||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||| |||||| |
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| T |
9122510 |
atctccttattttttatgcatccttagcaactcttatta---aagtc-taaggcattatgcaacaattttaaccattaaatct |
9122588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 18101649 - 18101525
Alignment:
| Q |
14 |
aatatctttccacagagcctcccatcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttagatctctgatacccaactct |
113 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||| |||||||||| ||||| | || ||| |||||||||||||||||| |||||| ||||||||| || |
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| T |
18101649 |
aatatctttccacaaagcctcccctctcgtgaaaaacctccaacgtcacttccctaatagggcaagattaaccaatcttaaatctctaatacccaaccct |
18101550 |
T |
|
| Q |
114 |
ccttcactcgtaggcttagaaacat |
138 |
Q |
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|||||| || |||||||| |||||| |
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| T |
18101549 |
ccttcattcttaggcttataaacat |
18101525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 5219599 - 5219475
Alignment:
| Q |
14 |
aatatctttccacagagcctcccatcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttagatctctgatacccaactct |
113 |
Q |
| |
|
|||||||||||||| |||||||| | ||||| ||| |||||| || || | |||||| ||||| || ||||||||||||||||||||| ||| || |
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| T |
5219599 |
aatatctttccacaaagcctccccttcagtgataaacgtccaacgtcaattccccaaaagggaaagatcaatcaatcttagatctctgatacctaaccct |
5219500 |
T |
|
| Q |
114 |
ccttcactcgtaggcttagaaacat |
138 |
Q |
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||||||||| |||||||| |||||| |
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| T |
5219499 |
ccttcactcttaggcttacaaacat |
5219475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 23115369 - 23115483
Alignment:
| Q |
16 |
tatctttccacagagcctcccatcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttagatctctgatacccaactctcc |
115 |
Q |
| |
|
||||||||| || |||||||| || |||| |||||||| ||| |||||| | |||||| |||||||||| ||||||| || ||||||||||||| |||| |
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| T |
23115369 |
tatctttcctcaaagcctcccttcatgtggtcaacctctaactccacttccc-aaaagggcaagattaactaatcttaaatgtctgatacccaaccctcc |
23115467 |
T |
|
| Q |
116 |
ttcactcgtaggctta |
131 |
Q |
| |
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||||||| | |||||| |
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| T |
23115468 |
ttcactctttggctta |
23115483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 7809139 - 7809256
Alignment:
| Q |
14 |
aatatctttccacagagcctcccatcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttagatctctgatacccaactct |
113 |
Q |
| |
|
|||||||||| ||| | |||||| || |||||||||||||||| |||||| | | || ||||||||||| ||||| ||||||||| |||||||| || |
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| T |
7809139 |
aatatctttcaacaaaacctcccctcctgtgatcaacctccaatgccacttccctacaaagacaagattaatcaatcatagatctctaatacccaatcct |
7809238 |
T |
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| Q |
114 |
ccttcactcgtaggctta |
131 |
Q |
| |
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||| ||||| |||||||| |
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| T |
7809239 |
cctgcactcttaggctta |
7809256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 12545837 - 12545954
Alignment:
| Q |
14 |
aatatctttccacagagcctcccatcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttagatctctgatacccaactct |
113 |
Q |
| |
|
|||||||| |||| ||||| || || ||||||||| || |||| |||||| | |||||| ||||||||| |||||||||| ||||||||| ||| || |
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| T |
12545837 |
aatatcttcacacaaagccttccctcctgtgatcaatctacaacgccacttccccaaaagggaaagattaactaatcttagatatctgatacctaaccct |
12545936 |
T |
|
| Q |
114 |
ccttcactcgtaggctta |
131 |
Q |
| |
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||||||||| || ||||| |
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| T |
12545937 |
ccttcactcttaagctta |
12545954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 2487755 - 2487630
Alignment:
| Q |
14 |
aatatctttccacagagcctcc-catcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttagatctctgatacccaactc |
112 |
Q |
| |
|
|||||||||||||| ||||||| | | | ||||||||||||| |||||||| | ||||| |||||||||||||||||| || |||||| |||| | |
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| T |
2487755 |
aatatctttccacaaagcctcctccccctttgatcaacctccatcaccacttgcccaaaagagttagattaaccaatcttagacctttgatactcaaccc |
2487656 |
T |
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| Q |
113 |
tccttcactcgtaggcttagaaacat |
138 |
Q |
| |
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|| ||||||| |||||| | |||||| |
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| T |
2487655 |
tcattcactcttaggctaacaaacat |
2487630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 13956107 - 13956040
Alignment:
| Q |
38 |
tcttgtgatcaacctccaacaccacttttcgaaaaggacaagattaaccaatcttagatctctgatac |
105 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| ||||||||| ||||||| ||||||||||| |
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| T |
13956107 |
tcttgtgatcaacctccaacgccacttcctcaaaagggaaagattaactaatcttaaatctctgatac |
13956040 |
T |
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